rna2082, rna2082 (mRNA) Nannochloropsis gaditana

Overview
Namerna2082
Unique Namerna2082
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002458.1:847602..847951 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g78.616.mrna
Orig protein idgnl|cribi|Naga_100009g78.616
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:847602..847951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g78gene1992Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2082rna2082-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28573.1cds2074Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2082 ID=rna2082|Name=rna2082|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGATGATGATGATGATGATTCTGAAAATAGAAGTTACCTTCTCAGCAGG
TACAGAAAGGAGTCATACAGGTAATGGTCTTGATACCTCAAGACAACCTG
TAGCAACAAGGATTTGCGCGGAAAATTCGGGTAATACTAATGATGACAAA
CATACTTTATCTACATTCTCTGACGCTTCCTTCTTGAGAGGGAAAGCAGA
TGGAGAGGAAAAGTCCCAACATTATGATGCCCGCTGCTGCTACGCCCTAT
TTTATCTGCTTTTTTCTTGTGTACAAAACATCCCACATTTCAACATAGGA
GGGGGAACAGGCTTTTGTAAAACGGATACTAGATTGTCACAGATAGGTAC
TTTTCTGGTGTCGACGACGGGATTGCGAAGTAAAAAACACGAAAAGATAA
CAGATTCAGAGAGAGAAGAATTGATTGATGATGGTTTACGACGCCTTGGT
CGACACACCCGATTCGCCGCTCGCGTTACTCGCGTTGTGGTGGACTGTGA
AGGCTTTATTCTAGTCATAGTTACTCTGACAATTCTATCTCTTTCCATCT
GTCTTGGATCTATAGAACGATGTGGAGACACTGAAAGTATACAAAGGAAG
GACAGCGAGTTGTTGAAGCAATATGTGATTCATTGTACATGCCAAGGATG
TTTGAGAGACTCACGTGTTGTAAGAGAAGAAACATGA
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protein sequence of rna2082

>rna2082-protein ID=rna2082-protein|Name=rna2082|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MVVRAEPAFHHLPASLDPCAHARSDHVTHSGSDYVTHSQPHAFPHCTPHG
PPHLEPYPGPHPSSDTLAHFGAHHGTDSGSHQGPH
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mRNA from alignment at CM002458.1:847602..847951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2082 ID=rna2082|Name=rna2082|organism=Nannochloropsis gaditana|type=mRNA|length=350bp|location=Sequence derived from alignment at CM002458.1:847602..847951- (Nannochloropsis gaditana)
ATGGTGGTCCGGTACGTGGTGAATGGACCGGAGGGAGAGTACGCGGTGCG
CTCGTCGTACCTGGCTAATCAAGATACCGGTGCGATGGATACTTTTTGGG
CAGGGCCGAGCCAGCCTTTCACCATTTACCCGCGAGTCTTGACCCCTGCG
CCCACGCCCGCTCCGACCATGTCACCCACTCCGGCTCCGACTATGTCACC
CACTCTCAGCCCCACGCGTTCCCCCACTGCACACCCCACGGCCCGCCCCA
CCTTGAGCCCTACCCTGGCCCCCACCCTTCCTCCGACACGCTCGCCCACT
TTGGCGCCCACCATGGCACCGACTCGGGCTCCCACCAAGGCCCCCACTAA
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Coding sequence (CDS) from alignment at CM002458.1:847602..847951-

>rna2082 ID=rna2082|Name=rna2082|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at CM002458.1:847602..847951- (Nannochloropsis gaditana)
GGCCGAGCCAGCCTTTCACCATTTACCCGCGAGTCTTGACCCCTGCGCCC
ACGCCCGCTCCGACCATGTCACCCACTCCGGCTCCGACTATGTCACCCAC
TCTCAGCCCCACGCGTTCCCCCACTGCACACCCCACGGCCCGCCCCACCT
TGAGCCCTACCCTGGCCCCCACCCTTCCTCCGACACGCTCGCCCACTTTG
GCGCCCACCATGGCACCGACTCGGGCTCCCACCAAGGCCCCCACTAAATG
GTGGTCCGGGCCGAGCCAGCCTTTCACCATTTACCCGCGAGTCTTGACCC
CTGCGCCCACGCCCGCTCCGACCATGTCACCCACTCCGGCTCCGACTATG
TCACCCACTCTCAGCCCCACGCGTTCCCCCACTGCACACCCCACGGCCCG
CCCCACCTTGAGCCCTACCCTGGCCCCCACCCTTCCTCCGACACGCTCGC
CCACTTTGGCGCCCACCATGGCACCGACTCGGGCTCCCACCAAGGCCCCC
ACTAAATGGTGGTCCG
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Synonyms
Publications