rna2078, rna2078 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2078
Unique Name	rna2078
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2564
Alignment location	CM002458.1:833603..835070 +

Link to JBrowse

Properties


Property Name	Value
Product	60s acidic ribosomal protein p0
Orig transcript id	gnl\|cribi\|Naga_100009g84.589.mrna
Orig protein id	gnl\|cribi\|Naga_100009g84.589
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:833603..835070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g84	gene1988	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2078	rna2078-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28546.1	cds2070	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:833603..835070+
coding sequence from alignment at CM002458.1:833603..835070+

mRNA sequence

>rna2078 ID=rna2078|Name=rna2078|organism=Nannochloropsis gaditana|type=mRNA|length=2564bp
TGAGAGCCCGACACGGATACCGGGCACCGCAAAGTCAACTTGCCGTGCTT
TTGATGCCGCTCGCCTTGCGCCTTACGTCGTTTATGGATTTTGAAGGACG
GAAGCTATAGTTTCTCGCAGAGCTGTTCAGAATCGAGAGGACAATTAAAT
GCCCCAACCCTTTTTTTGGTCTTGCCGCGAGCAGTGCTGTGATCCGTGCC
TGCAACATTCACATCGGAGCGAACTCTCATATTTGTTCGATTTTTTCCAT
TCAAACAGGATGGTCATGCGGACGCATCAGCGTGAGATGTGGCGTCAGCA
GCAATGTCTGGGTAGAAGACTAGGGTCATGTATATTCTGTCTCCTGATGG
CATCCCTTTTGTTTACTTCCGAGGTGGTCACAGCATTTGTGCCCGTCGCC
ACGCGTCGGCCCGACCTCCTCCACGTCTCTCGCCCCCCATTTCCTTCGAG
AGCTACGCCAGGTACCAGAGCTTTGCGCATGGTTTTACAGCCGCACGATG
TGGTGACGCACCTGGACCCAGCGTGGCTTTCCCACGTCTTTCAGGGCGTG
GCAGATGCGGCCGTGACTTCTTTGGATGCGACAAATGCCGCGGTGGACGC
CACCACCGATGCCGCCGCGAAGGAGCCGGGCTTCTTCGATAAATTCGTGA
ACACGGTCATGGGCGCGATCGAGGGTGTGCACAGTGAACTGGTGTCGCTC
GGCGTCCCTGGCGCCTACGGCTTGGCCATCATATTGTTCACCGCGGGCGT
CAAACTGGCCCTGCTTCCCGTCACCTACAAGCAGATGGAGTCAGCTCAGC
GTATGCAGGCCCTAGCGCCCAAGGCGAAGGAGCTCAAGGACAAGTACGGG
AAGAACAAGGCGCTCCTGAACCAGCTGACCGCCAAGCTCTACGAGGACGC
GGAGGTGAACCCTCTCGCCGGCTGCCTTCCCGCCCTCGCCCAAATTCCCA
TTTTCATTGCCCTCTACCGCTCCCTGATCAACCTTGCGGGGAACAGCGAC
TTCAACGAGCCCTTTCTCTGGCTGCCGAGTCTGGCCGGGCCTCTCTACGG
CCAAGCCCGAGGCACGGACTGGCTCTTCAAAAACTGGGTGGACGGCGTCC
CGGCCCTGGGCTGGCACGACACGATCGCCTTCCTCACCATCCCCGTCATA
CTGATCCTCACGCAGTCTATCTCCCAACGACTGCTCACCCCGCCCAGCGA
CGACCCCAAGACCGCGCAGACCCAGCGCGTCCTCAAATATCTGCCCATCA
TGGTCGGGTACTTCTCTCTGAGCGTGCCCTCCGGCCTGGGTGTCTACTGG
ATCACCAACAATTTGATCTCCACGGCCATCTCGATCAGCATCAAGGAGAA
GTTCGCCAAGCAGCCGATCGTGATCGACGTGGATGTGGACCCGGAGGACT
TGGGCTACGACCCCTCCACGGTGGCCATGGGCTTCGAAGAGATGATGGCG
GAGGCGACGCGCAACGCGCTTCCAAGCGAGCAGCCCAAGCGGGATCGACC
GACGCCATCCTCCCTTTTGAAAGCGTCAGAGAGTGTCGTGGCTGAGGAGG
GGGGGAAGAGGGACGAGGAGGCCGGCCGCGTGGGGGAGGAGAGAGAAAAA
GCGGGCGTGGAGGCCTGAGGCGAGAGAGGATGGCCACGGAATTGGACCGG
ACTGCGCGGGGATTGGCGTGGTGCTTGTATTTTAATGGGGAAGGGAAAGG
AGGTGAATATTGGGGGGCGGGGCGGAGTTTGACCCGAGTCTGGCTTCAAA
GAGAGGAACGGCAGGCTTCACAGCTTTCGGGCAGCATACGCGGGAATGTG
GGAGGAGAGATGCCATTTCGGATGGAAAACAACCGTAAAACGAGAGACTT
TTGTCAAAATGTGCTTGAGTGTTGAGCATACTGTTCAGCCGCTGTCTGCG
CTATTTCTGTTCCTTGCCTCGAGCGCCCTGTTCGGAGAAGGCCCTCCCCC
TCCACACCAACAGGCCGACCATGGCATGCTCAAAACTCTACCGGTCGAAT
ATCGATGGGAAAAGGATGGTTTTCCTCCCCTCCTTCGGGCGCACTCCACG
TTCTGTCTGCCTCCTCCCCGTAGACGATTTCCATGGGGCGCCCCCCGGCG
TCCAGGGAGCGTCGGCCGGCCTCCAGGATGGCGGTGGTCAGGGCGGTGGT
GCCAATTGTAGCCAAGGCGGCGTCAAAGTCCCCCACAGAGGCCTTCCCAC
TTTGGATGTCCACTACCGCGTCCACAAAGGCCTCGAAGCTAAGGTATCCG
TACCCACGCTGCCCCGCAAAGCGCCCGTCGGTCGGGGTGTACTTCATAAA
CAGCGGGTTCACACTCTTGAAGCCCCCGCCCCCGAGCTCGTCGCTGGCCA
GCGTATACCCCCGGTGGGCCTGATCCACGTTCACCTCTCCCCCGTGACCC
ATGTAGAAGAATCGCTGCTGGGAGTGCACGTCGGACTTGGGCGCCACCCA
GGAGGACGTGTAGAGGCCCGTGCCCAGGCTGGGCGAGGGCCCGCGGTTCT
GCCATTGGACAGACAGGGTGATGGTGTCCTCCGTGTCCATCTGGTACTGA
CAGGTGGCGACGCC

protein sequence of rna2078

>rna2078-protein ID=rna2078-protein|Name=rna2078|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MLLRCHAVWHATHLSSTFTLRPQRPQRHRQLVKKGLSRFRNSFRQLRLPH
FREHHFKKPLNNPLLKVTYISSHNQRAPSARAVKPLDLAHTSSLPLAIRR
TMPVWNRAKKEDYFERVEELLGSYTKVFVVGVDNVGSKQMQQIRQALRGT
ATVLMGKNTRIRKVMNIFLKKNPGHPIEQLVNYVGGNVGFVFTNGDLGSV
RETLEENRVPAPARVGSLAPCNVIVPPGPTGCDPGQTSFFQALQIATKIT
KGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSL
FDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAFKAC
VAVVVGLEEFSFEKAEPFKAYLKDPSAFAAASGGGEGGAAPAAAQEEAKP
AKEEEEEADIGAGNMFGGDGY

mRNA from alignment at CM002458.1:833603..835070+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2078 ID=rna2078|Name=rna2078|organism=Nannochloropsis gaditana|type=mRNA|length=1468bp|location=Sequence derived from alignment at CM002458.1:833603..835070+ (Nannochloropsis gaditana)
ATGTTGTTGAGATGTAGGTCGTCTAAAACTCATGTGTCGCTTTTGGTGGT
GACTACGGAACCCCATGACGCGGGCGTGCGGGTTGGGCagccatctcccc
ctcctgcggCGCTAGCGAAGGTCACGCTGTTTGGCACGCCACTCAcctgt
cctccaccttcacTTTGCGCCCACAAAGACCACAGCGTCACCGGCAGCTG
GTTAAAAAGGGTTTGAGTCGCTTTAGGAACTCATTCCGCCAGCTACGGCT
TCCTCACTTTCGCGAACACCACTTCAAGAAACCTCTCAACAACCCTTTAC
TGAAGGTAACATACATCTCTTCACATAACCAGCGGGCTCCGAGTGCACGT
GCTGTTAAGCCTCTTGACTTAGCTCACACGTCTTCTTTACCCCTGGCTAT
CCGCAGAACCATGCCTGTCTGGAATCgtgccaagaaggaggattaCTTTG
AGCGCGTGGAAGAGCTCCTGGGCTCGTACACCAAGGTCTTCGTCGTAGGC
GTCGACAACGTGGGGTCGAAGCAGATGCAACAGATCCGCCAAGCTCTTCG
CGGGACCGCCACCGTGCTGATGGGGAAAAACACTCGCATCCGTAAAGTGA
TGAACATTTTCCTCAAAAAGAACCCCGGCCATCCCATTGAGCAGTTGGTC
AACTACGTGGGCGGCAATGTAGGTTTCGTGTTTACCAACGGAGACCTCGG
GTCCGTCCGGGagacgctggaggagaacCGCGTGcccgcccctgcccgcg
TGGGCTCCCTGGCGCCTTGCAACGTGATCGTGCCCCCGGGCCCCACGGGC
TGCGATCCGGGGCAGACCTCTTTCTTCCAGGCCCTTCAGATCGCCACCAA
GATTACCAAGGGCCAGATCGAGATCACCACGGCCGTCCAGATCCttaagg
agggggacaaggtggGGAACTCGGAGGCTATCCTGCTGCAGAAGCTGaac
atcctccccttcacgtACGGGCTGGTGATACAGACCATCTACGACAACGG
CTCCCTCTTCGACCCCAAGGTGCTCGACCTGACGGATGCCGACCTGGCGG
CTAAGTTTGCCGTCGCCGTCCGCAACGTCGCGGCCATCTCTCTCCAGCTC
GGCTACCCGACCTTGGCCTCCTTGCCCCACTCGATCGCGAACGCCTTCAA
GGCCTGcgtggccgtggtggtgggTCTGGAGGAGTTCTCCTTCGAGAAGG
CAGAGCCCTTCAAGGCCTACCTGAAGGACCCGTCGGCCTTTGCCGCTGCc
agcggtgggggagagggcggtgcCGCTCCGGCGGCTGcgcaagaggaggc
gaagccggcgaaggaggaggaagaagaggctgACATCGGTGCCGGGAACA
TGTTCGGGgtaggtggagggggtggagggagtggagggaggggggggggt
agcAGTCATAGTGAACGGAAAGACTCACGCGTGCACGGACTCACTTGTAA
CAGGGTGACGGCTACTAA

Coding sequence (CDS) from alignment at CM002458.1:833603..835070+

>rna2078 ID=rna2078|Name=rna2078|organism=Nannochloropsis gaditana|type=CDS|length=3798bp|location=Sequence derived from alignment at CM002458.1:833603..835070+ (Nannochloropsis gaditana)
ATGTTGTTGAGATGTCACGCTGTTTGGCACGCCACTCAcctgtcctccac
cttcacTTTGCGCCCACAAAGACCACAGCGTCACCGGCAGCTGGTTAAAA
AGGGTTTGAGTCGCTTTAGGAACTCATTCCGCCAGCTACGGCTTCCTCAC
TTTCGCGAACACCACTTCAAGAAACCTCTCAACAACCCTTTACTGAAGGT
AACATACATCTCTTCACATAACCAGCGGGCTCCGAGTGCACGTGCTGTTA
AGCCTCTTGACTTAGCTCACACGTCTTCTTTACCCCTGGCTATCCGCAGA
ACCATGCCTGTCTGGAATCgtgccaagaaggaggattaCTTTGAGCGCGT
GGAAGAGCTCCTGGGCTCGTACACCAAGGTCTTCGTCGTAGGCGTCGACA
ACGTGGGGTCGAAGCAGATGCAACAGATCCGCCAAGCTCTTCGCGGGACC
GCCACCGTGCTGATGGGGAAAAACACTCGCATCCGTAAAGTGATGAACAT
TTTCCTCAAAAAGAACCCCGGCCATCCCATTGAGCAGTTGGTCAACTACG
TGGGCGGCAATGTAGGTTTCGTGTTTACCAACGGAGACCTCGGGTCCGTC
CGGGagacgctggaggagaacCGCGTGcccgcccctgcccgcgTGGGCTC
CCTGGCGCCTTGCAACGTGATCGTGCCCCCGGGCCCCACGGGCTGCGATC
CGGGGCAGACCTCTTTCTTCCAGGCCCTTCAGATCGCCACCAAGATTACC
AAGGGCCAGATCGAGATCACCACGGCCGTCCAGATCCttaaggaggggga
caaggtggGGAACTCGGAGGCTATCCTGCTGCAGAAGCTGaacatcctcc
ccttcacgtACGGGCTGGTGATACAGACCATCTACGACAACGGCTCCCTC
TTCGACCCCAAGGTGCTCGACCTGACGGATGCCGACCTGGCGGCTAAGTT
TGCCGTCGCCGTCCGCAACGTCGCGGCCATCTCTCTCCAGCTCGGCTACC
CGACCTTGGCCTCCTTGCCCCACTCGATCGCGAACGCCTTCAAGGCCTGc
gtggccgtggtggtgggTCTGGAGGAGTTCTCCTTCGAGAAGGCAGAGCC
CTTCAAGGCCTACCTGAAGGACCCGTCGGCCTTTGCCGCTGCcagcggtg
ggggagagggcggtgcCGCTCCGGCGGCTGcgcaagaggaggcgaagccg
gcgaaggaggaggaagaagaggctgACATCGGTGCCGGGAACATGTTCGG
GGGTGACGGCTACTAAATGTTGTTGAGATGTCACGCTGTTTGGCACGCCA
CTCAcctgtcctccaccttcacTTTGCGCCCACAAAGACCACAGCGTCAC
CGGCAGCTGGTTAAAAAGGGTTTGAGTCGCTTTAGGAACTCATTCCGCCA
GCTACGGCTTCCTCACTTTCGCGAACACCACTTCAAGAAACCTCTCAACA
ACCCTTTACTGAAGGTAACATACATCTCTTCACATAACCAGCGGGCTCCG
AGTGCACGTGCTGTTAAGCCTCTTGACTTAGCTCACACGTCTTCTTTACC
CCTGGCTATCCGCAGAACCATGCCTGTCTGGAATCgtgccaagaaggagg
attaCTTTGAGCGCGTGGAAGAGCTCCTGGGCTCGTACACCAAGGTCTTC
GTCGTAGGCGTCGACAACGTGGGGTCGAAGCAGATGCAACAGATCCGCCA
AGCTCTTCGCGGGACCGCCACCGTGCTGATGGGGAAAAACACTCGCATCC
GTAAAGTGATGAACATTTTCCTCAAAAAGAACCCCGGCCATCCCATTGAG
CAGTTGGTCAACTACGTGGGCGGCAATGTAGGTTTCGTGTTTACCAACGG
AGACCTCGGGTCCGTCCGGGagacgctggaggagaacCGCGTGcccgccc
ctgcccgcgTGGGCTCCCTGGCGCCTTGCAACGTGATCGTGCCCCCGGGC
CCCACGGGCTGCGATCCGGGGCAGACCTCTTTCTTCCAGGCCCTTCAGAT
CGCCACCAAGATTACCAAGGGCCAGATCGAGATCACCACGGCCGTCCAGA
TCCttaaggagggggacaaggtggGGAACTCGGAGGCTATCCTGCTGCAG
AAGCTGaacatcctccccttcacgtACGGGCTGGTGATACAGACCATCTA
CGACAACGGCTCCCTCTTCGACCCCAAGGTGCTCGACCTGACGGATGCCG
ACCTGGCGGCTAAGTTTGCCGTCGCCGTCCGCAACGTCGCGGCCATCTCT
CTCCAGCTCGGCTACCCGACCTTGGCCTCCTTGCCCCACTCGATCGCGAA
CGCCTTCAAGGCCTGcgtggccgtggtggtgggTCTGGAGGAGTTCTCCT
TCGAGAAGGCAGAGCCCTTCAAGGCCTACCTGAAGGACCCGTCGGCCTTT
GCCGCTGCcagcggtgggggagagggcggtgcCGCTCCGGCGGCTGcgca
agaggaggcgaagccggcgaaggaggaggaagaagaggctgACATCGGTG
CCGGGAACATGTTCGGGGGTGACGGCTACTAAATGTTGTTGAGATGTCAC
GCTGTTTGGCACGCCACTCAcctgtcctccaccttcacTTTGCGCCCACA
AAGACCACAGCGTCACCGGCAGCTGGTTAAAAAGGGTTTGAGTCGCTTTA
GGAACTCATTCCGCCAGCTACGGCTTCCTCACTTTCGCGAACACCACTTC
AAGAAACCTCTCAACAACCCTTTACTGAAGGTAACATACATCTCTTCACA
TAACCAGCGGGCTCCGAGTGCACGTGCTGTTAAGCCTCTTGACTTAGCTC
ACACGTCTTCTTTACCCCTGGCTATCCGCAGAACCATGCCTGTCTGGAAT
CgtgccaagaaggaggattaCTTTGAGCGCGTGGAAGAGCTCCTGGGCTC
GTACACCAAGGTCTTCGTCGTAGGCGTCGACAACGTGGGGTCGAAGCAGA
TGCAACAGATCCGCCAAGCTCTTCGCGGGACCGCCACCGTGCTGATGGGG
AAAAACACTCGCATCCGTAAAGTGATGAACATTTTCCTCAAAAAGAACCC
CGGCCATCCCATTGAGCAGTTGGTCAACTACGTGGGCGGCAATGTAGGTT
TCGTGTTTACCAACGGAGACCTCGGGTCCGTCCGGGagacgctggaggag
aacCGCGTGcccgcccctgcccgcgTGGGCTCCCTGGCGCCTTGCAACGT
GATCGTGCCCCCGGGCCCCACGGGCTGCGATCCGGGGCAGACCTCTTTCT
TCCAGGCCCTTCAGATCGCCACCAAGATTACCAAGGGCCAGATCGAGATC
ACCACGGCCGTCCAGATCCttaaggagggggacaaggtggGGAACTCGGA
GGCTATCCTGCTGCAGAAGCTGaacatcctccccttcacgtACGGGCTGG
TGATACAGACCATCTACGACAACGGCTCCCTCTTCGACCCCAAGGTGCTC
GACCTGACGGATGCCGACCTGGCGGCTAAGTTTGCCGTCGCCGTCCGCAA
CGTCGCGGCCATCTCTCTCCAGCTCGGCTACCCGACCTTGGCCTCCTTGC
CCCACTCGATCGCGAACGCCTTCAAGGCCTGcgtggccgtggtggtgggT
CTGGAGGAGTTCTCCTTCGAGAAGGCAGAGCCCTTCAAGGCCTACCTGAA
GGACCCGTCGGCCTTTGCCGCTGCcagcggtgggggagagggcggtgcCG
CTCCGGCGGCTGcgcaagaggaggcgaagccggcgaaggaggaggaagaa
gaggctgACATCGGTGCCGGGAACATGTTCGGGGGTGACGGCTACTAA

Synonyms

Publications