rna2064, rna2064 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2064
Unique Name	rna2064
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1955
Alignment location	CM002458.1:803465..806428 -

Link to JBrowse

Properties


Property Name	Value
Product	dna excision repair protein
Orig transcript id	gnl\|cribi\|Naga_100009g100.591.mrna
Orig protein id	gnl\|cribi\|Naga_100009g100.591
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:803465..806428 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g100	gene1974	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28548.1	cds2056	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2064	rna2064-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:803465..806428-
coding sequence from alignment at CM002458.1:803465..806428-

mRNA sequence

>rna2064 ID=rna2064|Name=rna2064|organism=Nannochloropsis gaditana|type=mRNA|length=1955bp
TGATGTACGGCAGCCATTAAACCAGGCAGCGAGCGCGGAGCGAGGAGCGC
AAAGGTTACGTCGGTGCTCGCTGGGGTATAGAAGTTCATGACTTTGAACT
AGGCCAATATAATGGACTCTAATACATTTCTTCCTTGTATACAACTACAC
CAGACTCCTGTTTCTTCTTTCAAACAACCTTCCAGGTTTAACGAAAGCTA
CAAGCACCGAGTCTTTTGCCTCTCTGCTGCTTTTAAGTGGGAAGGCGGGA
GGTAATGGCTGTGCTTGACAATGCTACCGATCGATCCATTGAAGAATTGT
CAGACCTGTACGAGTGCGATAGGACTTTAGACGCCATTGAACGTAATGGC
TACTGTCGCGTGGCTTTGCAGTTCCCCGATGAAATGCTAAAAGACGCGCC
GCGTGTGTGTCAATTTCTCATGGCCCAAAGTAAAATACGTCAAAAGCGGG
AAAAGGAGAGACAACACGATGTCTCCGAGCACACTGAGCCTCTATTTTTT
GTAATTGGTGACACATCATACGGTAGTTGTTGCGTGGATGAGGTTGCGGC
TCAACATTTAGATGCGGATCTAGTGGTACACTACGGCCATGCCTGCCTGT
CGCCCACCTCTCGGCTACCCGTCCTCTACGTTTTCGGCCGGAAGCCCCTC
ACGCAGACTCTCCAGTCCATAGCTACCTGTCTTTCTACAACGCTCTTGGC
GCGGAGCAAAGAAAAGCGAGCATTTTTGTTTTATGAGCTGGCATACGAGG
CCATCATTCCTGATGTGGCACTCGAGGTGAACGGACAGCTGGTAGGCTCT
CACGTAGAGGTAACCACAGCACGCCTTCCGTTGGCTTCCGTAAGCCCCAT
CTTGCCCTTCTCTGAGGAAGGACAGTACTTGGCGAGTCAAGCCACGGGGT
GCGAGAAGGAAGCGGGGAAGGTAATCTTTGCGGGGGGACTCGAGCTCAGG
GTCGAGAACAATGGAGAAGAGGGGGAGGGGGAAGGAGGGGATGCGGTTGT
AATATACATAGGAGAAAGCGAGAACAACAAGCAATTGGTCAACATCATGC
TCCGATTCAATGCCTGCGACTGTCTCGTCTATGACCCAGCCAGTCCTCCT
CTCCCGGCCCCGCCACGGCTCCGCGAAGTGTCGGTCAAAACCAGCCAAGC
CCTCAAGCGCCGATACTACCTGGTACAACGCGCACGGGATGCGTCCGTCT
TCGGGGTAGTGGTTGGGACTCTGGGCGTGGGCAGGTATATGAGTGTGGTG
GCGGCCGTGCGCCGTCTCATCGCCCGGGCGGGCAAGAAGGCCTACACCCT
GTTGATAGGGAAACTCAATGCGGCCAAACTCGCGAACTTTGCCGAGATCG
AGACCTTCGTCCTGGTGGCGTGTCCCGAGGCCTCACTCCTGGAGGACGGC
GGCAGAGCTTTCCACGCGCCTGTCGTCACGCCGCTGGAGATGGAGATGGC
TTTGGGTGGAAAGTCGTGGGATGGCTCGTATAGCACCGATTTTCGCGAGC
TCGAGTCTCTCTGCCAAAGTGGCGCCCAGAAGGAGCGCGGTCTAGATACT
GACTTAAGGAAAAATGGTAACTGTGCCAATTGTGAAAGCGATGGCGAGGA
CGAGCCCTACTTCTCGCTGGTCTCCGGCGGCTACAAGGGCGGTGTAGGAG
GGAAGGCGAAGGGGACTCTTCCCTTGGAGGGGAGCACGGCATTGACAAAG
TTCTCAAGTCCTGCAGGAGATTTTTTACAGCTTCGAGAGTACCGCGGGTT
GGGTCATGACAAGCATAAGAATGCGGTGTGCGAAACTGAGACAGGGGACA
GGGCTGAGGACAGGGAGGGAGGAGCAAAACCTCCAGCTGGGATTGTGGAG
GGTAGGAGAGGGATCGCCTCTGACTACGACAACGTGTGAATAGAAAGGCG
CTGCGTAAAGTCAGGTCACATCATATACATTGAAGCCAGCAAACTAAAAT
GTACC

protein sequence of rna2064

>rna2064-protein ID=rna2064-protein|Name=rna2064|organism=Nannochloropsis gaditana|type=polypeptide|length=589bp
MPVRKKPGGSKLGDGDRDGIREVPSSVKTTARKGRSPPTKRVKITNVDVL
GKAIPYSRGFSCGGPLDGQPPAEDSASPFPWTSEYTKATETVSPKDLPSI
IDMVTGRAVPWPGADWVAKDAAKRAVLGLDTEARLIGSVTVHVHMRSAIL
RAMLSAQKVKSTQRPVKGLKGPIQVNWDRTSGEFPTPQGQLPLSRLLCAM
DEKKALCAEESHASIMERLWSLQNPQSSPWRRPMIRLLTSLQPPPAILLA
PDEPEEEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSA
ARLPPSTGRFRRSPSGAPRPSSNATAGATSSNGVVDVVEESEGEGRVKER
RSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERARRDF
QFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGPSL
NEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGK
TVECLALILANPLAAEGGGSDERGASGDEEKGDSPWPGGGDAVPATTGDL
GGQRGRRRSGGGSTGAAWHRGQGAPALRDGRRTGWKRKT

mRNA from alignment at CM002458.1:803465..806428-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2064 ID=rna2064|Name=rna2064|organism=Nannochloropsis gaditana|type=mRNA|length=2964bp|location=Sequence derived from alignment at CM002458.1:803465..806428- (Nannochloropsis gaditana)
CTAGCACGTTCCACCGGGTCACCTTTCATGTAGCACGCAAATACTCACAG
CTTACCATGCTCCAGGGGTCTGAGGAAGATTCGCAGGTATGCCAGTCCGC
AAGAAGCCCGGTGGCAGCAAGCTGGGTGACGGCGATCGGGATGGGATACG
GGAAGTTCCTTCATCAGTCAAGACTACCGCCAGGAAAGGACGTTCACCGC
CTACGAAAAGGGTCAAAATTACAAACGTTGATGTCCTGGGAAAGGCGATT
CCTTATTCCCGTGGTTTCTCTTGCGGGGGGCCGCTCGACGGACAACCTCC
TGCCGAGGATTCTGCCAGTCCATTTCCGTGGACCTCTGAATACACAAAGG
CTACCGAAACCGTCTCACCCAAGGATCTCCCTTCAATCATCGATATGGTA
ACTGGTCGTGCAGTACCTTGGCCGGGGGCTGACTGGGTGGCGAAGGACGC
AGCAAAAAGAGCTGTCTTAGGTCTTGATACCGAAGCTCGATTGATAGGCT
CGGTCACGGTGCATGTGCACATGCGGTCCGCAATCCTCCGTGCGATGCTT
TCGGCTCAAAAGGTAAAATCGACCCAGAGGCCCGTAAAGGGCTTGAAGGG
GCCCATACAGGTAAATTGGGATCGCACGAGCGGGGAGTTTCCGACTCCTC
AAGGCCAGCTGCCCCTGTCCCGGCTTCTCTGCGCCATGGACGAGAAGAAA
GCTCTGTGCGCCGAGGAGTCCCACGCCAGCATCATGGAGCGCCTATGGTC
CCTCCAAAACCCGCAATCCTCGCCATGGCGGCGGCCCATGATCCGGCTTC
TCACGTCCCTTCAACCACCACCAGCCATCCTTCTTGCCCCGGACGAGCCC
GAGGAGGAGGAAGCTGACCTGAACGTGGAGGTGACATTCCACGTGTATTT
CGGCCGACTAATTTTCGAGCTGATCGCGAACAGCGACACGCAGGCCCTAA
TGGCAGCGCTGACACCGGCTGGAGACGTCTTTTCCGCAGCCAGGCTGCCT
CCGTCCACCGGCAGGTTTCGCCGCAGCCCGAGTGGGGCCCCACGTCCGTC
GAGCAACGCCACGGCGGGCGCAACGTCGAGCAATGGGGTCGTGGACGTTG
TCGAGGAGAGCGAAGGCGAGGGGCGGGTAAAGGAAAGGAGGTCGGAGGTC
GGGGGGGAGGAGGCCTCTGTGGGGGGGGTGCTGGAGCCTGGAGGAGGCGA
CCATGGGCCGGAGCAGGAAGCCACGTCCGTCCCAGGAGCGACCGAAGGTT
TGTCAGCCACGCCCTGGGAGCGGGCGCGGCGGGATTTTCAATTTTCTCTG
CCAGGTCTCCTCCACGCGGCCGAGAGCACCGGGTACGCCGTCCGCGACCC
CCAGCCCCGGGGCTTGACCGTTTCCATGTTTGAATTTCAACGGTCGACGT
TACAGTGGATGTTGGACCGGGAGCGGGGCCCAAGCCTGAACGAGTACTTC
TGGGAGCGCCGGGCCTGGAAGGACGCGGAGACCGCGGAGGAATGTTTCTA
CTACTTCCCCGACGCGGGGGAGCTCCGGTTGGAGAAGCCTCCTCACAGGA
CGGGAGGAGTCTTGTGCGAAGAGATGGGCCTGGGAAAGACGGTAGAGTGC
TTGGCCTTGATCCTGGCCAACCCGCTGGCGGCTGAAGGGGGGGGGTCGGA
CGAGCGGGGCGCCAGCGGGGACGAGGAGAAAGGGGATAGTCCGTGGCCAG
GGGGAGGAGACGCGGTCCCTGCTACAACGGGCGACCTGGGGGGGCAGAGG
GGCCGGAGAAGAAGCGGGGGGGGTTCAACGGGAGCCGCCTGGCACAGGGG
ACAGGGGGCGCCGGCGCTGAGGGATGGAAGGAGGACGGGCTGGAAGAGGA
AGACCTGACAGGACGCCCCTCCCGTGCGACGCTGATCGTCGTCCCTGGCA
CATTGCTGAACCAGTGGATGATGGAGGTCCGAAAAACCACAGAGGCGGGG
GGCCTGGAGGCGCTGGTCTTCCGAGGGAATGTCAAAGTGACGAAGAGCTT
GCGGGAATTGCGACGCATCTCACGCGAGGGGTGGGTGGGCTCTTTCATTC
CATCCGCAGCAGAGTTGCCCGTGGGAGAGCTGGTATGGGCCCCCGTCTGC
CTCACCCCGGATCGTGAAAACCAGGGCTCGGCGCGCCGGGGTACGGCCGG
TCCTGCCTCGTCCTCGCCTTCCCATCCCCCGGTCTCGCTGCGGGATCCGG
ACAGGAGACGCCTTCGCGAGAGCTACCAGCGGGCGAAGGTCTTGAAGGTC
ATGGAAGGGCCGCTGGGCGCCACGGTGGAGCTGCGCTACTGGTACGAGAG
GAACGAAGTGTGGGATGCCGACCTGGTGATCACTACCTACGACGTCCTTC
GTAACGCGAACGGCGGGCCCATGCTCCGGCACGTACACTGGCACCGCGTC
ATTCTCGACGAATGTCAGGAGATTCGGACCTCCACCTCGGCGATCGCGAA
GCTGTGCTCCGTCCTGCACGCCACTCACCGGTGGATGGTGAGTGGCACCC
CGCTCTTCGCCTCTGTGGACGACCTCTTCGGCGAGCTGCAGTTCCTGGCA
GTCTCCCCCTTCTCGCTGGCCAACGATGGTTTCTGGGAGGCGAAGGTGGG
GGGGCCCTGGAGGCGACGGGAGGAATCCGCTTTGAGGTTGCTGCATCTAC
TCGTCTCGGTCTGCATGATGCGGCACTCCAAGGGCCAGACATACGCCTGT
ACCGGCAGCCCTTTGGTGGCGATGCCAACTCGGACCATCACCTGGCAGCC
CGTGGAGGGAAGCTCAGTCTCGGAGCAGTTTTGCTATGCCTATCTGGAGG
TGCTGGCCGCGAAGGAGTGCATCAGGCTGGTGGAGCAGACACTGACGGCC
GCCACCTTCCAGGCCACGTCGGCCGAGGGGGAGGGAGAGAGAGGGGCGGG
GGGCGAGAGGGAAGGAGGAGGAGGGGCTAGGGAGGATGACCAGCACCGAA
GAAGCGGCAGAGGA

Coding sequence (CDS) from alignment at CM002458.1:803465..806428-

>rna2064 ID=rna2064|Name=rna2064|organism=Nannochloropsis gaditana|type=CDS|length=1770bp|location=Sequence derived from alignment at CM002458.1:803465..806428- (Nannochloropsis gaditana)
ATGCCAGTCCGCAAGAAGCCCGGTGGCAGCAAGCTGGGTGACGGCGATCG
GGATGGGATACGGGAAGTTCCTTCATCAGTCAAGACTACCGCCAGGAAAG
GACGTTCACCGCCTACGAAAAGGGTCAAAATTACAAACGTTGATGTCCTG
GGAAAGGCGATTCCTTATTCCCGTGGTTTCTCTTGCGGGGGGCCGCTCGA
CGGACAACCTCCTGCCGAGGATTCTGCCAGTCCATTTCCGTGGACCTCTG
AATACACAAAGGCTACCGAAACCGTCTCACCCAAGGATCTCCCTTCAATC
ATCGATATGGTAACTGGTCGTGCAGTACCTTGGCCGGGGGCTGACTGGGT
GGCGAAGGACGCAGCAAAAAGAGCTGTCTTAGGTCTTGATACCGAAGCTC
GATTGATAGGCTCGGTCACGGTGCATGTGCACATGCGGTCCGCAATCCTC
CGTGCGATGCTTTCGGCTCAAAAGGTAAAATCGACCCAGAGGCCCGTAAA
GGGCTTGAAGGGGCCCATACAGGTAAATTGGGATCGCACGAGCGGGGAGT
TTCCGACTCCTCAAGGCCAGCTGCCCCTGTCCCGGCTTCTCTGCGCCATG
GACGAGAAGAAAGCTCTGTGCGCCGAGGAGTCCCACGCCAGCATCATGGA
GCGCCTATGGTCCCTCCAAAACCCGCAATCCTCGCCATGGCGGCGGCCCA
TGATCCGGCTTCTCACGTCCCTTCAACCACCACCAGCCATCCTTCTTGCC
CCGGACGAGCCCGAGGAGGAGGAAGCTGACCTGAACGTGGAGGTGACATT
CCACGTGTATTTCGGCCGACTAATTTTCGAGCTGATCGCGAACAGCGACA
CGCAGGCCCTAATGGCAGCGCTGACACCGGCTGGAGACGTCTTTTCCGCA
GCCAGGCTGCCTCCGTCCACCGGCAGGTTTCGCCGCAGCCCGAGTGGGGC
CCCACGTCCGTCGAGCAACGCCACGGCGGGCGCAACGTCGAGCAATGGGG
TCGTGGACGTTGTCGAGGAGAGCGAAGGCGAGGGGCGGGTAAAGGAAAGG
AGGTCGGAGGTCGGGGGGGAGGAGGCCTCTGTGGGGGGGGTGCTGGAGCC
TGGAGGAGGCGACCATGGGCCGGAGCAGGAAGCCACGTCCGTCCCAGGAG
CGACCGAAGGTTTGTCAGCCACGCCCTGGGAGCGGGCGCGGCGGGATTTT
CAATTTTCTCTGCCAGGTCTCCTCCACGCGGCCGAGAGCACCGGGTACGC
CGTCCGCGACCCCCAGCCCCGGGGCTTGACCGTTTCCATGTTTGAATTTC
AACGGTCGACGTTACAGTGGATGTTGGACCGGGAGCGGGGCCCAAGCCTG
AACGAGTACTTCTGGGAGCGCCGGGCCTGGAAGGACGCGGAGACCGCGGA
GGAATGTTTCTACTACTTCCCCGACGCGGGGGAGCTCCGGTTGGAGAAGC
CTCCTCACAGGACGGGAGGAGTCTTGTGCGAAGAGATGGGCCTGGGAAAG
ACGGTAGAGTGCTTGGCCTTGATCCTGGCCAACCCGCTGGCGGCTGAAGG
GGGGGGGTCGGACGAGCGGGGCGCCAGCGGGGACGAGGAGAAAGGGGATA
GTCCGTGGCCAGGGGGAGGAGACGCGGTCCCTGCTACAACGGGCGACCTG
GGGGGGCAGAGGGGCCGGAGAAGAAGCGGGGGGGGTTCAACGGGAGCCGC
CTGGCACAGGGGACAGGGGGCGCCGGCGCTGAGGGATGGAAGGAGGACGG
GCTGGAAGAGGAAGACCTGA

Synonyms

Publications