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Properties
| Property Name | Value |
|---|
| Product | glycoside hydrolase family 8 |
| Orig transcript id | gnl|cribi|Naga_100009g111.603.mrna |
| Orig protein id | gnl|cribi|Naga_100009g111.603 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:781386..784491 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2053 ID=rna2053|Name=rna2053|organism=Nannochloropsis gaditana|type=mRNA|length=575bp
TATATATATATATATATATATATATATGCCGCAGGGTGGAGGGTGTCGAG
GCGGGGCAAGTACCGACTATGTCGCCCCATCGGGCCTCTTTTCCCAGGAA
GCGGCGTCGGGGGGCTTGTAAAACACTCCAAAATCCCTAGAAGAGATGGA
TTTATCCCGGTCCCATTGGAGTAGCACATGCAGCCCACGGGGGAAGCGGG
CCTTTTGTAGTGTACAAAATTTGTGTGGTGCCTGGGAATGGTTTAGAAGG
AAGGCTGGTCTGGCGTTTAGAGCACGAATCAGGGGTGTGTGCAAAGAGGA
AGGTGCCACGGCAACTCGGTCATGGCTAGGGGAAATGTCGATCGCCCACG
TCGCCTTTGTATTGTTTACGAGCCAGAACTTTGTGTCATGGGCGGGGTAT
ACACTATTACTGTGTGGCAAGAGAGTGAAGGCGAAGGGTCACGAGACGCG
GAAACGTGTGCAAAGGAAGAGATGAGAGGGTAATCGGGAGCGACGCGCTG
TTAGCTCGTTTCGTTTGTTCACACATACTTTTCGTGCATCGTCCAGACGT
GAGCCTGGGGTCTGCAGGCAGCCCA back to topprotein sequence of rna2053 >rna2053-protein ID=rna2053-protein|Name=rna2053|organism=Nannochloropsis gaditana|type=polypeptide|length=735bp
MGRNLMAGAATLEQSFSRQAGEKAPHTSRDGRGVADHGTSNSSSRPRPPT
PSGRTNTSVGKLMGDFNPTENFASFSTIPSFLVTSTVAQEEGLSDDSFSM
GSTCSSSSSPSSLPRSPSPAVSAPSSSPSSRPLKYPWSVAGAAVAAATGA
ANAVAASWRQGTPPVSTSAGHRPAAFPGRSPHGPSSYDSCINVQSDSSAL
ADPTAQAVPGQDAAFSPRLPPRPPKPSGRREAAARLAATYDVGGADYAPS
ASLDFPSRVEAGQGQAGLGSAYDSQAPGWAGKELHRGRRRGQPPPRKHWT
DALPAVLDPRKYTRRQAAVCLIMTTLALIVMIVVLSMAARRTIEVEGLLP
GGDQGAAVTGVYRNLFTELMAKTPAESDVKVQEAYAHLFHGDPETEALYV
EVEPNMAQIINTESDMVTSEGISYGMITCVHMDEQEPFNRLWNWARFHMQ
HTAGTFASFFAWRVTKGGLLVDAKDVIPAPDAEAYIAMALITAHRKWGST
PAYPYKAEALRLLRVMGQWQRGFFSRDGKATFNPTDWGSTHSNPSYHLPH
FYEAFARFMANEGESRASGFWSGAARKSRFYFHVASNKKTGLMPDYTTLD
GKPAPDPNLGGHTNFQWDAWRAPANVAVDWAWWNADGWQPKFADRILAFF
ASQGPEYASQYTTDGQVADNNTGHDPGLVAMNAVVVLAARDQALKPSFVR
ELWDLPIPSGKGRYYPAMLYMMSLLHCSGKFKAYF back to topmRNA from alignment at CM002458.1:781386..784491- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2053 ID=rna2053|Name=rna2053|organism=Nannochloropsis gaditana|type=mRNA|length=3106bp|location=Sequence derived from alignment at CM002458.1:781386..784491- (Nannochloropsis gaditana)
CATCTCATGCCAATGCTTTCGATTTCAATCTACGCACCCTTTAACCACAG
GTCTGAATTTCCAGGTGCATCAAATCTGTCGAGGGCCATCCCGACAGTGA
AAGAGCTGGTCGGACTTGCCCCGGGAAGAGATCTTCAGAACGTGTGGGGT
CTCTGCCCATGGGGCGCAACCTTATGGCTGGTGCAGCGACCCTCGAGCAG
GTTGGTGTATAAATTTCCCCTCATTCAAGAAGTGTGGTGCATGTGCGAGT
GCGGGTGGGGCCGAAGCTGTGGCAATGCCCGGTATGAGCCATGGGGAGGC
TGTCAAGATACGCGGCCGCCTCATTCCGTGCTTGTCCAACAGGGGTTTAC
CTTGAAGTGACACATTTTGACCCAATCAGGATGAAACGCGTGTGACGTGA
TGCGATGATAGATATACATACAATTCATTCTCGTGAGACGGTGAATGGAG
TCACTTTAGGGAAAGTTTTGGACCTTCTCCGTACCTCCCTGTTTCGCATG
AGGCATAGCTCTATCACCGTGGCCGTCCTCGAATCACACAGCTCATCATG
TATACGTGATCCCTTTCCACATCCATTCCTATCAGTCTTTCTCTAGACAA
GCAGGTGAAAAGGCCCCTCACACGTCGCGGGACGGAAGAGGCGTTGCAGA
CCATGGCACTTCAAATTCCTCTTCCCGGCCGCGGCCTCCCACTCCCTCGG
GCCGGACCAACACGTCTGTCGGCAAATTGATGGGCGACTTCAACCCTACC
GAGAACTTTGCGTCATTTTCAACCATTCCGTCGTTCCTTGTGACCTCGAC
AGTGGCGCAGGAGGAAGGTTTGTCGGACGACAGCTTTTCCATGGGATCCA
CGTGCTCCTCCTCCTCCTCCCCTTCCTCCCTACCCCGCTCCCCCTCTCCC
GCCGTGTCGGCGCCTTCTTCCTCGCCTTCCTCGCGTCCATTGAAATACCC
CTGGTCCGTTGCTGGTGCTGCCGTGGCGGCCGCTACAGGCGCCGCAAACG
CAGTGGCAGCGTCGTGGAGGCAGGGTACGCCACCCGTCTCCACCTCTGCG
GGCCATCGCCCAGCCGCTTTTCCCGGTCGGAGCCCGCACGGCCCCAGCAG
CTACGACTCGTGCATCAACGTCCAAAGCGACTCATCGGCCCTCGCGGACC
CTACCGCCCAGGCAGTACCCGGCCAAGACGCAGCCTTCTCCCCACGCCTC
CCCCCACGGCCCCCCAAGCCGAGCGGACGAAGGGAGGCAGCCGCCCGCCT
TGCCGCCACCTACGACGTGGGAGGGGCTGACTACGCGCCATCCGCCTCCC
TCGATTTCCCCTCGCGCGTGGAGGCCGGCCAAGGCCAGGCAGGGCTGGGC
TCCGCGTATGACAGTCAGGCGCCGGGATGGGCGGGCAAGGAATTGCACAG
GGGCAGGAGGCGCGGCCAGCCCCCCCCCCGGAAGCACTGGACGGATGCCT
TGCCCGCCGTCCTCGACCCCCGCAAGTACACGCGTCGACAGGCGGCGGTG
TGCCTGATCATGACGACCCTGGCGCTGATCGTGATGATCGTGGTTCTCAG
CATGGCGGCCCGGAGGACGATCGAGGTGGAGGGGCTCCTCCCGGGGGGAG
ACCAAGGCGCGGCCGTGACGGGCGTGTATCGGAATCTCTTCACAGAGCTC
ATGGCCAAGACGCCAGCGGAGTCGGACGTCAAGGTCCAAGAGGCCTACGC
CCACCTCTTCCACGGCGACCCAGAGACAGAGGCCCTCTATGTGGAGGTGG
AGCCCAACATGGCGCAGATCATCAACACAGAGAGCGACATGGTGACGAGC
GAGGGCATCTCGTACGGGATGATTACCTGCGTGCACATGGACGAGCAGGA
GCCTTTCAACAGGCTCTGGAACTGGGCACGCTTTCACATGCAGCACACGG
CAGGGACATTTGCCAGCTTCTTCGCCTGGCGCGTGACGAAGGGCGGCCTC
CTGGTGGACGCCAAGGACGTAATTCCAGCGCCAGACGCCGAGGCCTACAT
CGCCATGGCCCTGATCACTGCCCATCGAAAGTGGGGCTCCACGCCCGCTT
ACCCGTACAAGGCAGAGGCCCTGCGTCTCCTCCGCGTCATGGGCCAGTGG
CAGCGCGGATTCTTCTCCCGGGACGGGAAGGCGACCTTCAATCCGACGGA
CTGGGGCTCCACGCACTCCAACCCTTCCTACCACCTGCCCCACTTCTACG
AGGCCTTCGCTCGCTTCATGGCCAATGAAGGAGAGTCCCGCGCGTCGGGG
TTTTGGTCGGGCGCGGCCCGCAAAAGCCGCTTTTATTTCCACGTGGCGTC
GAACAAGAAGACAGGGCTGATGCCCGACTACACGACCCTGGACGGAAAGC
CTGCCCCGGACCCGAATCTCGGGGGACACACCAACTTCCAGTGGGACGCC
TGGCGTGCCCCCGCCAATGTGGCAGTGGACTGGGCCTGGTGGAACGCGGA
CGGGTGGCAGCCCAAGTTTGCGGATCGGATCTTGGCTTTCTTTGCCTCCC
AGGGGCCGGAGTACGCGAGTCAGTACACGACGGACGGGCAGGTGGCGGAT
AATAACACGGGGCACGACCCCGGTCTGGTGGCGATGAACGCCGTGGTGGT
GCTGGCGGCGAGGGATCAGGCCCTGAAACCCTCCTTTGTGCGCGAGCTGT
GGGACCTGCCCATACCCTCGGGCAAGGGCCGGTACTATCCTGCCATGCTG
TACATGATGTCCCTGCTGCACTGCTCGGGGAAATTCAAGGCGTACTTCTG
AGGTAATCTATGCCAGAGAGGACGACGGGTGCAGGCGAGGAAGGTAGTAT
CGCTCGACAGCGTGGCCCTGTGCAAGGGTCCTTTGTCAATATTGTTGTTC
CATATAGATGTTTGTACGGGAAGATACATGTAGTTAGGGTTAGGGTTAGG
GTTAGGACAGGGGTGTCAGGGGACGGGGTGACGGGGGCTGTGCCGGGAGG
ACTGATGGGGACGGGCGTTCTGTACTTGGACGCCGCCAGGTCTTGTGAAG
ACTTTACTGCCACACACACACACACATGCATTAAGAGCATGGAGGGGTGA
CGGCTTGAGTGTGCACATGGTGATTGTCCATTACAAAGCCCTATATATAT
ATATAT back to topCoding sequence (CDS) from alignment at CM002458.1:781386..784491- >rna2053 ID=rna2053|Name=rna2053|organism=Nannochloropsis gaditana|type=CDS|length=4416bp|location=Sequence derived from alignment at CM002458.1:781386..784491- (Nannochloropsis gaditana)
TCTTTCTCTAGACAAGCAGGTGAAAAGGCCCCTCACACGTCGCGGGACGG
AAGAGGCGTTGCAGACCATGGCACTTCAAATTCCTCTTCCCGGCCGCGGC
CTCCCACTCCCTCGGGCCGGACCAACACGTCTGTCGGCAAATTGATGGGC
GACTTCAACCCTACCGAGAACTTTGCGTCATTTTCAACCATTCCGTCGTT
CCTTGTGACCTCGACAGTGGCGCAGGAGGAAGGTTTGTCGGACGACAGCT
TTTCCATGGGATCCACGTGCTCCTCCTCCTCCTCCCCTTCCTCCCTACCC
CGCTCCCCCTCTCCCGCCGTGTCGGCGCCTTCTTCCTCGCCTTCCTCGCG
TCCATTGAAATACCCCTGGTCCGTTGCTGGTGCTGCCGTGGCGGCCGCTA
CAGGCGCCGCAAACGCAGTGGCAGCGTCGTGGAGGCAGGGTACGCCACCC
GTCTCCACCTCTGCGGGCCATCGCCCAGCCGCTTTTCCCGGTCGGAGCCC
GCACGGCCCCAGCAGCTACGACTCGTGCATCAACGTCCAAAGCGACTCAT
CGGCCCTCGCGGACCCTACCGCCCAGGCAGTACCCGGCCAAGACGCAGCC
TTCTCCCCACGCCTCCCCCCACGGCCCCCCAAGCCGAGCGGACGAAGGGA
GGCAGCCGCCCGCCTTGCCGCCACCTACGACGTGGGAGGGGCTGACTACG
CGCCATCCGCCTCCCTCGATTTCCCCTCGCGCGTGGAGGCCGGCCAAGGC
CAGGCAGGGCTGGGCTCCGCGTATGACAGTCAGGCGCCGGGATGGGCGGG
CAAGGAATTGCACAGGGGCAGGAGGCGCGGCCAGCCCCCCCCCCGGAAGC
ACTGGACGGATGCCTTGCCCGCCGTCCTCGACCCCCGCAAGTACACGCGT
CGACAGGCGGCGGTGTGCCTGATCATGACGACCCTGGCGCTGATCGTGAT
GATCGTGGTTCTCAGCATGGCGGCCCGGAGGACGATCGAGGTGGAGGGGC
TCCTCCCGGGGGGAGACCAAGGCGCGGCCGTGACGGGCGTGTATCGGAAT
CTCTTCACAGAGCTCATGGCCAAGACGCCAGCGGAGTCGGACGTCAAGGT
CCAAGAGGCCTACGCCCACCTCTTCCACGGCGACCCAGAGACAGAGGCCC
TCTATGTGGAGGTGGAGCCCAACATGGCGCAGATCATCAACACAGAGAGC
GACATGGTGACGAGCGAGGGCATCTCGTACGGGATGATTACCTGCGTGCA
CATGGACGAGCAGGAGCCTTTCAACAGGCTCTGGAACTGGGCACGCTTTC
ACATGCAGCACACGGCAGGGACATTTGCCAGCTTCTTCGCCTGGCGCGTG
ACGAAGGGCGGCCTCCTGGTGGACGCCAAGGACGTAATTCCAGCGCCAGA
CGCCGAGGCCTACATCGCCATGGCCCTGATCACTGCCCATCGAAAGTGGG
GCTCCACGCCCGCTTACCCGTACAAGGCAGAGGCCCTGCGTCTCCTCCGC
GTCATGGGCCAGTGGCAGCGCGGATTCTTCTCCCGGGACGGGAAGGCGAC
CTTCAATCCGACGGACTGGGGCTCCACGCACTCCAACCCTTCCTACCACC
TGCCCCACTTCTACGAGGCCTTCGCTCGCTTCATGGCCAATGAAGGAGAG
TCCCGCGCGTCGGGGTTTTGGTCGGGCGCGGCCCGCAAAAGCCGCTTTTA
TTTCCACGTGGCGTCGAACAAGAAGACAGGGCTGATGCCCGACTACACGA
CCCTGGACGGAAAGCCTGCCCCGGACCCGAATCTCGGGGGACACACCAAC
TTCCAGTGGGACGCCTGGCGTGCCCCCGCCAATGTGGCAGTGGACTGGGC
CTGGTGGAACGCGGACGGGTGGCAGCCCAAGTTTGCGGATCGGATCTTGG
CTTTCTTTGCCTCCCAGGGGCCGGAGTACGCGAGTCAGTACACGACGGAC
GGGCAGGTGGCGGATAATAACACGGGGCACGACCCCGGTCTGGTGGCGAT
GAACGCCGTGGTGGTGCTGGCGGCGAGGGATCAGGCCCTGAAACCCTCCT
TTGTGCGCGAGCTGTGGGACCTGCCCATACCCTCGGGCAAGGGCCGGTAC
TATCCTGCCATGCTGTACATGATGTCCCTGCTGCACTGCTCGGGGAAATT
CAAGGCGTACTTCTGAATGGGGCGCAACCTTATGGCTGGTGCAGCGACCC
TCGAGCAGTCTTTCTCTAGACAAGCAGGTGAAAAGGCCCCTCACACGTCG
CGGGACGGAAGAGGCGTTGCAGACCATGGCACTTCAAATTCCTCTTCCCG
GCCGCGGCCTCCCACTCCCTCGGGCCGGACCAACACGTCTGTCGGCAAAT
TGATGGGCGACTTCAACCCTACCGAGAACTTTGCGTCATTTTCAACCATT
CCGTCGTTCCTTGTGACCTCGACAGTGGCGCAGGAGGAAGGTTTGTCGGA
CGACAGCTTTTCCATGGGATCCACGTGCTCCTCCTCCTCCTCCCCTTCCT
CCCTACCCCGCTCCCCCTCTCCCGCCGTGTCGGCGCCTTCTTCCTCGCCT
TCCTCGCGTCCATTGAAATACCCCTGGTCCGTTGCTGGTGCTGCCGTGGC
GGCCGCTACAGGCGCCGCAAACGCAGTGGCAGCGTCGTGGAGGCAGGGTA
CGCCACCCGTCTCCACCTCTGCGGGCCATCGCCCAGCCGCTTTTCCCGGT
CGGAGCCCGCACGGCCCCAGCAGCTACGACTCGTGCATCAACGTCCAAAG
CGACTCATCGGCCCTCGCGGACCCTACCGCCCAGGCAGTACCCGGCCAAG
ACGCAGCCTTCTCCCCACGCCTCCCCCCACGGCCCCCCAAGCCGAGCGGA
CGAAGGGAGGCAGCCGCCCGCCTTGCCGCCACCTACGACGTGGGAGGGGC
TGACTACGCGCCATCCGCCTCCCTCGATTTCCCCTCGCGCGTGGAGGCCG
GCCAAGGCCAGGCAGGGCTGGGCTCCGCGTATGACAGTCAGGCGCCGGGA
TGGGCGGGCAAGGAATTGCACAGGGGCAGGAGGCGCGGCCAGCCCCCCCC
CCGGAAGCACTGGACGGATGCCTTGCCCGCCGTCCTCGACCCCCGCAAGT
ACACGCGTCGACAGGCGGCGGTGTGCCTGATCATGACGACCCTGGCGCTG
ATCGTGATGATCGTGGTTCTCAGCATGGCGGCCCGGAGGACGATCGAGGT
GGAGGGGCTCCTCCCGGGGGGAGACCAAGGCGCGGCCGTGACGGGCGTGT
ATCGGAATCTCTTCACAGAGCTCATGGCCAAGACGCCAGCGGAGTCGGAC
GTCAAGGTCCAAGAGGCCTACGCCCACCTCTTCCACGGCGACCCAGAGAC
AGAGGCCCTCTATGTGGAGGTGGAGCCCAACATGGCGCAGATCATCAACA
CAGAGAGCGACATGGTGACGAGCGAGGGCATCTCGTACGGGATGATTACC
TGCGTGCACATGGACGAGCAGGAGCCTTTCAACAGGCTCTGGAACTGGGC
ACGCTTTCACATGCAGCACACGGCAGGGACATTTGCCAGCTTCTTCGCCT
GGCGCGTGACGAAGGGCGGCCTCCTGGTGGACGCCAAGGACGTAATTCCA
GCGCCAGACGCCGAGGCCTACATCGCCATGGCCCTGATCACTGCCCATCG
AAAGTGGGGCTCCACGCCCGCTTACCCGTACAAGGCAGAGGCCCTGCGTC
TCCTCCGCGTCATGGGCCAGTGGCAGCGCGGATTCTTCTCCCGGGACGGG
AAGGCGACCTTCAATCCGACGGACTGGGGCTCCACGCACTCCAACCCTTC
CTACCACCTGCCCCACTTCTACGAGGCCTTCGCTCGCTTCATGGCCAATG
AAGGAGAGTCCCGCGCGTCGGGGTTTTGGTCGGGCGCGGCCCGCAAAAGC
CGCTTTTATTTCCACGTGGCGTCGAACAAGAAGACAGGGCTGATGCCCGA
CTACACGACCCTGGACGGAAAGCCTGCCCCGGACCCGAATCTCGGGGGAC
ACACCAACTTCCAGTGGGACGCCTGGCGTGCCCCCGCCAATGTGGCAGTG
GACTGGGCCTGGTGGAACGCGGACGGGTGGCAGCCCAAGTTTGCGGATCG
GATCTTGGCTTTCTTTGCCTCCCAGGGGCCGGAGTACGCGAGTCAGTACA
CGACGGACGGGCAGGTGGCGGATAATAACACGGGGCACGACCCCGGTCTG
GTGGCGATGAACGCCGTGGTGGTGCTGGCGGCGAGGGATCAGGCCCTGAA
ACCCTCCTTTGTGCGCGAGCTGTGGGACCTGCCCATACCCTCGGGCAAGG
GCCGGTACTATCCTGCCATGCTGTACATGATGTCCCTGCTGCACTGCTCG
GGGAAATTCAAGGCGTACTTCTGAATGGGGCGCAACCTTATGGCTGGTGC
AGCGACCCTCGAGCAG back to top
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