rna2050, rna2050 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2050
Unique Name	rna2050
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1793
Alignment location	CM002458.1:773179..774703 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100182g13.940.mrna
Orig protein id	gnl\|cribi\|Naga_100182g13.940
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:773179..774703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100182g13	gene1961	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2050	rna2050-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28630.1	cds2042	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:773179..774703+
coding sequence from alignment at CM002458.1:773179..774703+

mRNA sequence

>rna2050 ID=rna2050|Name=rna2050|organism=Nannochloropsis gaditana|type=mRNA|length=1793bp
CCTATTATTTTTAAGGGATGGGGGATGGGTTGACCTGTGTCTTCCCTGAG
GACGATGATATGAATCGGCGGCTGGGAGCTACGGGCTCATTGGTGAACCG
GAGGGGGGAGGTTAAGCTAACTTGTCTATGTCGTGGCCAAGCCCGCCCGG
ACAAATTGTGTGCTAGAATTTATCGCCCTGCAAGCCTGGCTGGAAATGAT
CAAAGTTAAATAATACATGTCAATTGCTTGTTGAGTTAAAAGCTTGTCAC
AATGGCGCGACCGGGAACGTTTAGACTTCTCGAGGGGGGACATCTTTCGT
GACGTCCATTAAGCGACTTTCTAGAGTACATCAATCGAACTCAACTGAAG
GCCAACTTCTCGCAAATAAAATAGTCTAAATAGTTGCTATGGAGGTGGAT
GAATCTGTCGGACACCTCTTGGCCGTGGGGCAGCTGTCCGAAAGGGAAGG
CGAGGAAGGGGATGCGCATGAAGAGGAACTGTCCAAGGAGCGGCATCGAA
ATGAGGAGTTCGAGGAAGAGGATGAAGAGGAAGGGCTACCGCTAGTGGCT
GCGGATGATGTACTTGGCAATTTACAAGTGTGGGCACGCACATTGGAACG
TCCACCGAAGGGAAATTTGAAGACCTACTGTGAAGGGCTTTGGCGTCCCG
ACAAACAACTTTGCCGCATCATAAAAACACGTGGGAACGACCTTCGCTCG
ATGGGTTTTCCTTACGAAGGAGATACGCACTTATTCCCGGAAGAAACCCT
GTATCTTGTCGAACGGTGCAAACTCGAAGTTGGGAATCTGACAACGCCGG
AGCTGTACGAAGCGGTGGACCTGCAGCATTACCTAACTTACGCCTACTTC
CGTCAGACAAGTTTAATCGTTTTTCGGGCAGAGCCAAGCTGTCCGGTCGG
AGTGGCTTTCGAGGCGTACGCTCCTTCCTCCCAGTTTCGAAAAACAGCAC
GCGAACATCCCATATTTTACATCATGTATGGGGGCACGCGCGATCCTGTG
CCCAGCGAGGAGGAGCTGATGGCTGTATTCAAGTGGGCGAAAGGTGTGCC
TGTGAAGTACGCCATGGTGTCCGGGGATGGAGGAGTCTTCGCCGTTAACA
TTGCCCATTGGCCATTGGAAAACAAAACGCAGACAGACACACGTGGGAAA
GCTGCTGCTGCGACGGTCGTATCTTGTGAGCAGGAGAGAGGAAAGGAGGG
CGACGAAGATACAGAAGGTAGGAGACACAAGCTCTGTCGAAAGGACCGTC
GAGAGATGGAAAGACAGAGGCATCAGGAAGCGTTACGTTCCAAGGAGCAG
GAATGTCATGACCTCCAGTCTGGTAACGATGAGAAAGAAGGGCTTCAAGA
AAACGCGGGCGAGTCGACCAGCGAGACACATTGCAATCTGCCCAACCTTG
CAAAATGGTGAATTGTACAGAGTTGAATTGGTCATCTCCCACACACCTAA
AACTTTTCATTGTATTCATAGAGCTGATGGTGAGGCTGATGACGGGTCAG
AAATGGGAAATAATTCCTCTGACGGGCGGACATTGCAAAGCACACTAGGG
AAAGCTGACAGTTTAAGTTAAAGTACGAGACTGGGAAATACGCTATTGAC
ATAAAAAGCAGCTTTGGCTGTGAAATCCTTCCTGCCTCTTGTTGGTGGTA
CGCTAGTAAGCTGTCCATCACTGTAAAATGTTTGGCTCCCTTGAGCACTG
CATTTAAAAACATTTGTAAAAGGAAGAAATAATATTTTGGCACTCATATG
GGCAAGCCATGATAATAATTTTGAAGAATCATTGCGAAATTCC

protein sequence of rna2050

>rna2050-protein ID=rna2050-protein|Name=rna2050|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MSSSLPALGSSRRRERILLGLDQAFGISTVGEAERRKDKVSSSNQEVTMS
TKEPYYSDLPSHLWEALKSASEEKSLQSEDVLPSTSSVEDVLQRLLLRNS
KDLQLRGKTVSMDNARGQNEQLRSRASRQQTRRCTRLSVRTSNLGNSLIS
GNGVESSDVKRKPRDVASLDSYEGLKSAWQGYAQDLLTLCQENAMRTKGG
MSPISPAQSRQNILPCSSSLKRGPKKSLERSLAMADFSGCQIKILDSKCV
SEKQSIMSCL

mRNA from alignment at CM002458.1:773179..774703+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2050 ID=rna2050|Name=rna2050|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp|location=Sequence derived from alignment at CM002458.1:773179..774703+ (Nannochloropsis gaditana)
CCAGCCAGGCTTGCAGGGCGATAAATTCTAGCACACAATTTGTCCGGGCG
GGCTTGGCCACGACATAGACAAGTTAgcttaacctcccccctccggtTCA
CCAATGAGCCCGTAGCTCCCAGCCGCCGATTCATATCATCGTCCTCAGGG
AAGACACAGGTCAACCCATCCCCCATCCCTTAAAAATAATAGGGAGCAAA
AAGAAGAACATGTCATCCTCTCTGCCCGCACTGGGAAGCAGCCGTAGACG
GGAGCGCATTTTATTGGGTCTGGACCAGGCCTTCGGGATCTCTACCGTGG
GAGaagcagaaagaagaaaggataaGGTTTCAAGCAGTAATCAAGAGGTG
ACCATGAGCACGAAAGAACCTTATTACAGCGACCTACCATCCCACCTCTG
GGAAGCTCTCAAGAGTGCTAGCGAGGAAAAATCGCTCCAGGTCAGTTTCA
CGCCATAAATGTTCCATCAACGTGGTTCGCAAATCACATTGGTCCTCATT
TTTCCCTCTACAGTCAGAAGATGTGCTACCTTCTACGAGTTCTGTAGAAG
ATGTTTTACAAAGGCTTCTGCTACGAAATAGTAAGGACCTGCAGCTCCGA
GGTAAAACGGTAAGCATGGACAACGCTCGCGGTCAAAACGAGCAGCTCCG
AAGCCGGGCGTCACGGCAGCAGACTCGTCGATGTACGAGGCTTAGTGTGA
GGACCAGTAATTTGGGGAATTCTTTGATTTCAGGAAATGGGGTTGAGAGC
TCTGACGTCAAGAGGAAACCAAGAGACGTAGCTTCCCTCGACAGCTATGA
AGGGTTGAAAAGCGCGTGGCAAGGCTACGCACAAGACCTCCTGACGTTAT
GTCAGGAAAATGCTATGCGAACAAAAGGTGGGATGTCTCCCATTTCTCCT
GCGCAATCAAGACAGAATATACTCCCGTGTAGCAGTAGTCTTAAACGTGG
ACCCAAGAAAAGTTTGGAGAGGTCTCTAGCCATGGCAGATTTTTCTGGAT
GTCAAATTAAAATTCTTGATTCCAAATGCGTCTCAGAGGTGGGTTTTGAA
GGCCTTGTACTTCACGAAAGTCGTGGAGCCTTACATATTTTACCTCTCCC
GAGAAATCACAGAAGCAGTCAATTATGTCATGCCTCTAAGCGTTTGCGAA
TCATACCCAAAAAGGGGCGGCGATTTCAGGCGGATGTATTGACTTCATCA
GGACGGTGCACAGTGATATGGCATGGTAACGGACTTATTGATCGAGAGAG
ACTAACCGCCTTTCGCGCCAGTATGCCGAATAGATGTCGAGGTTTGGAGA
GGGAATCAGGAAGGATGTTGCGTAACACATGTGTTGATTCATGACTCGCA
ATAATTACACATCGATTGCATTAGTTTCTCGAAGGAAGACTTTCAGTAAA
TCGATTTCAAGAAAAAGTGAAGTTGGAAATCGAACAGGTGCCACTACATT
TGTGTCAAATATACTTTAATTTTGACAACGAGACAAACGGCAATGAGGAA
AGAGTAGACTGCAACTCTCCTCTCC

Coding sequence (CDS) from alignment at CM002458.1:773179..774703+

>rna2050 ID=rna2050|Name=rna2050|organism=Nannochloropsis gaditana|type=CDS|length=2349bp|location=Sequence derived from alignment at CM002458.1:773179..774703+ (Nannochloropsis gaditana)
ATGTCATCCTCTCTGCCCGCACTGGGAAGCAGCCGTAGACGGGAGCGCAT
TTTATTGGGTCTGGACCAGGCCTTCGGGATCTCTACCGTGGGAGaagcag
aaagaagaaaggataaGGTTTCAAGCAGTAATCAAGAGGTGACCATGAGC
ACGAAAGAACCTTATTACAGCGACCTACCATCCCACCTCTGGGAAGCTCT
CAAGAGTGCTAGCGAGGAAAAATCGCTCCAGTCAGAAGATGTGCTACCTT
CTACGAGTTCTGTAGAAGATGTTTTACAAAGGCTTCTGCTACGAAATAGT
AAGGACCTGCAGCTCCGAGGTAAAACGGTAAGCATGGACAACGCTCGCGG
TCAAAACGAGCAGCTCCGAAGCCGGGCGTCACGGCAGCAGACTCGTCGAT
GTACGAGGCTTAGTGTGAGGACCAGTAATTTGGGGAATTCTTTGATTTCA
GGAAATGGGGTTGAGAGCTCTGACGTCAAGAGGAAACCAAGAGACGTAGC
TTCCCTCGACAGCTATGAAGGGTTGAAAAGCGCGTGGCAAGGCTACGCAC
AAGACCTCCTGACGTTATGTCAGGAAAATGCTATGCGAACAAAAGGTGGG
ATGTCTCCCATTTCTCCTGCGCAATCAAGACAGAATATACTCCCGTGTAG
CAGTAGTCTTAAACGTGGACCCAAGAAAAGTTTGGAGAGGTCTCTAGCCA
TGGCAGATTTTTCTGGATGTCAAATTAAAATTCTTGATTCCAAATGCGTC
TCAGAGAAGCAGTCAATTATGTCATGCCTCTAAATGTCATCCTCTCTGCC
CGCACTGGGAAGCAGCCGTAGACGGGAGCGCATTTTATTGGGTCTGGACC
AGGCCTTCGGGATCTCTACCGTGGGAGaagcagaaagaagaaaggataaG
GTTTCAAGCAGTAATCAAGAGGTGACCATGAGCACGAAAGAACCTTATTA
CAGCGACCTACCATCCCACCTCTGGGAAGCTCTCAAGAGTGCTAGCGAGG
AAAAATCGCTCCAGTCAGAAGATGTGCTACCTTCTACGAGTTCTGTAGAA
GATGTTTTACAAAGGCTTCTGCTACGAAATAGTAAGGACCTGCAGCTCCG
AGGTAAAACGGTAAGCATGGACAACGCTCGCGGTCAAAACGAGCAGCTCC
GAAGCCGGGCGTCACGGCAGCAGACTCGTCGATGTACGAGGCTTAGTGTG
AGGACCAGTAATTTGGGGAATTCTTTGATTTCAGGAAATGGGGTTGAGAG
CTCTGACGTCAAGAGGAAACCAAGAGACGTAGCTTCCCTCGACAGCTATG
AAGGGTTGAAAAGCGCGTGGCAAGGCTACGCACAAGACCTCCTGACGTTA
TGTCAGGAAAATGCTATGCGAACAAAAGGTGGGATGTCTCCCATTTCTCC
TGCGCAATCAAGACAGAATATACTCCCGTGTAGCAGTAGTCTTAAACGTG
GACCCAAGAAAAGTTTGGAGAGGTCTCTAGCCATGGCAGATTTTTCTGGA
TGTCAAATTAAAATTCTTGATTCCAAATGCGTCTCAGAGAAGCAGTCAAT
TATGTCATGCCTCTAAATGTCATCCTCTCTGCCCGCACTGGGAAGCAGCC
GTAGACGGGAGCGCATTTTATTGGGTCTGGACCAGGCCTTCGGGATCTCT
ACCGTGGGAGaagcagaaagaagaaaggataaGGTTTCAAGCAGTAATCA
AGAGGTGACCATGAGCACGAAAGAACCTTATTACAGCGACCTACCATCCC
ACCTCTGGGAAGCTCTCAAGAGTGCTAGCGAGGAAAAATCGCTCCAGTCA
GAAGATGTGCTACCTTCTACGAGTTCTGTAGAAGATGTTTTACAAAGGCT
TCTGCTACGAAATAGTAAGGACCTGCAGCTCCGAGGTAAAACGGTAAGCA
TGGACAACGCTCGCGGTCAAAACGAGCAGCTCCGAAGCCGGGCGTCACGG
CAGCAGACTCGTCGATGTACGAGGCTTAGTGTGAGGACCAGTAATTTGGG
GAATTCTTTGATTTCAGGAAATGGGGTTGAGAGCTCTGACGTCAAGAGGA
AACCAAGAGACGTAGCTTCCCTCGACAGCTATGAAGGGTTGAAAAGCGCG
TGGCAAGGCTACGCACAAGACCTCCTGACGTTATGTCAGGAAAATGCTAT
GCGAACAAAAGGTGGGATGTCTCCCATTTCTCCTGCGCAATCAAGACAGA
ATATACTCCCGTGTAGCAGTAGTCTTAAACGTGGACCCAAGAAAAGTTTG
GAGAGGTCTCTAGCCATGGCAGATTTTTCTGGATGTCAAATTAAAATTCT
TGATTCCAAATGCGTCTCAGAGAAGCAGTCAATTATGTCATGCCTCTAA

Synonyms

Publications