rna2048, rna2048 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2048
Unique Name	rna2048
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1974
Alignment location	CM002458.1:769260..771308 -

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Properties


Property Name	Value
Product	sulfotransferase
Orig transcript id	gnl\|cribi\|Naga_100182g11.944.mrna
Orig protein id	gnl\|cribi\|Naga_100182g11.944
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:769260..771308 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100182g11	gene1959	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28634.1	cds2040	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2048	rna2048-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:769260..771308-
coding sequence from alignment at CM002458.1:769260..771308-

mRNA sequence

>rna2048 ID=rna2048|Name=rna2048|organism=Nannochloropsis gaditana|type=mRNA|length=1974bp
ATGTTTGAACTGCCGACGAGGGACCTCATCGAAGATGCTTTGTCGGCCTC
TGCCAACGCCACGTGCAAAATTGTCTTCCTAGTTTTGATCGGAGTAGTGG
CCACTGCACAAGGAGTTTTTAACGATCAAGGGGTTTCCGATTTGGGCAGA
CTCGTGTATCACGTGACCCTCCCCGCCCTCCTTTTCGTGAATATCATTAG
CGAGGTGACCGTCGCACGTTTAATGGTACTTTGGAAACTTCCTGTGCTAG
CTCTTGTACACGTCTGCTCAGGCTTCATCCTTGCTACGTGCCTGACAACT
TTCTTTCGCATCCGCGGCATCGGGAAGAAGGCTGTGACCCTGTGTCTCAT
GTTCGGAAACGTGGGCTCCCTGTCGATCGCCATGATCGACACGCTCTGTG
CGGACGAGCCTTTGGCGTCAGGTGTTGGCCCGGACTGTGACTTGCGGGGC
GTCGAATACATCTCTTTCTACCTGATTACCCAGACCATCCTCATGTTCAC
GTGGGCGGAGGAGATTGTCAAGGACCAGAAAGGGGATGAGGAGGAGGAGG
AGGAGGCGGAGGCACTTGAGGGGGAAGATGAGGTCATGAAGAGCACTTAT
TTCCAAGACGCAGATCAAGAGCGCGCGCTGGAGTGCCGGCCTCACTCAGC
ATCGATGAACGTCCCTGGGGCGGCGGCACGTCTAGAGAGTGAGGGCTCGG
ACCAACAAGTGCCTCCCGCGCTAGCAGCGGGGCCTTCCTCGGCGCTCTCT
CGAAGGAGGGGCTCTGTCGCTACCCCGTCACGCACGGACAAGTACGACTC
CGGAATCCGGACGAGCGCATCGGAGCTGGGCCCGGGAACACCGCGCCTGC
GGCGGTTGCAATCTCATTCGCAGATCCTCGACCAGGAAGATATCAACTCA
ATCCTTAGTCGGTATCCAGTCGAGTCCCGGCCTCAGATGGAGACAGAGCA
GAGCGGTTTGGGCTTGCTGGGGAGTAGTTTGAGTCTGGTGGGGAGCATGA
GCAGCCCGTACTTGCCCTCTTTGTCCTCGTCCCCTTCCCTATTTCGCCTG
CGGGGCTCGCGGACGGACACGACTCACCCGCAGCTGCATCCGGAGGAGAG
CGCGGAGAGGGAGCGGCTCATGGGTCGACGCCGGAGTGGAAGCATTGGCT
TCGGATCCACCCACCAGGCAGGCAACAGCTCTGTGTCGGCTGGTAAAGGC
AACGGAGCCATCCCTAGCGAGGGCCTCGTGCCCCCGCGTATCTCCGTGAA
GGGCCTGGAGCCCTCCCGCTCTCATATCTCCTCCCAGTCCCTCTCCTCCA
CGCCCCCGCTCCCCGTGCATTCTCCTGAACCTAGCATCCTTGTCGTGCCC
CCTCCGACCTGTTACTCGCGCATTCTAGACGTCTGGGTCGGCTTCCTCCT
CGTTATCTCGCGCCTTGCGGCCAATCCCTCGATACGTGCCGCCCTGACCG
CCTTCTTCCTCGGGCTCTTCCCGCCCATCAAAGCTCTCTTCGTCCCCACT
GTCGATAGGCCCGATCCTCCCTTGGGCGCCTTCTTGGGGGCCATGCAGAT
TCTGGGCCAGGCACAAGTTCCTTGCTCGATGCTGATGCTATCAGGCTCCG
GAACCATCCGGTATCTGAACGACAAGGCCGCCCAAAACAACGCAACCGCG
TCTTTCGCGTTCAAGCCTCGAGTGATTTTCTGCATAATCTTAGGTCGGAT
TCTGCTCTTTCCACTCATTGGGCTGGGAGCCTGGTGGGGCGGGTACACGC
TGGGGCTTTTCGAAGGAACTCCTGTCCTCTCCTTGGTCGCGCTATTGGAT
GCTGCTGTCCCTTCGGCCCAGAATGTGGTCATGTTGATCTTGGTGCACGG
CAAGTCAGAACACGGTCATGCGCTTGCCTATGTCATCCTTTGGCAATATG
CTCTCTGCATACCGGTGCTTATCTTGAACGTAACGATTTATCTCTCCATT
ATCCGGTCTGTCTATCTATCTTGA

protein sequence of rna2048

>rna2048-protein ID=rna2048-protein|Name=rna2048|organism=Nannochloropsis gaditana|type=polypeptide|length=595bp
MVNCNARNRDVISLSKHVAATASPKTSTSTSSSSPSSSTSSFPSSSSSNL
SPPPSAVQASPSFVSLPRMVPPNATITLGHKGVPVHELPEEARVRVPLCS
ARGKVCVAGIKRKLSDGGAKLWQEENAEKTNVGILRPSHDAWGIKKIVFI
YCDDFLRRCFEMPWFHDPEWQALLLPVFQALNVAPRMVVRCLLASMPPGI
AIPPHHDTGYWVHYSHRIHLPIETDPARIVFRVGPSKDRLQRYDLPEGCL
VELNNQAKHSVDNLWDRSRVHLILDYLEKDSIERSILPPGAKLHQTRRSI
DLESEHGSRPCPSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDW
RWRREEHLTWEDHRETYLRFFHAALLNENPSCMTGESTPSYLLHSDIVLP
RVRKLAPTAKLLVILRCPVARAYSQYQMVTDPEGSVEQKKARGSHWLGKS
FEEVVEAEMQDLERHRVHPTMNYQEFKDGYLSSRPLGHGSHSLLGRGLYA
LQLQPWLEAFGRDQLMVMFMEDMASHNAVQAQLGKVFDFLGLPPHSIIDT
HAKNTRAYTPMDERTKARLSAFYAPFNQQLFQILNVHERRWEARE

mRNA from alignment at CM002458.1:769260..771308-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2048 ID=rna2048|Name=rna2048|organism=Nannochloropsis gaditana|type=mRNA|length=2049bp|location=Sequence derived from alignment at CM002458.1:769260..771308- (Nannochloropsis gaditana)
ACACACACTGCACAACAGTTCTTCATGTCTTGTCCTTTCCTTGTTCGACG
CCAGCCGTCGTCTTGTTGTCGCCAGGCCTGCTGCCGTGATATTGAAACAG
TGACGGTCGACATCGAGGCAGGAGGTGGCTGGCTGGTGGGAATCGGTATG
AGTGTTCTTACATTCGGCGCATCTAACGCGTCAACCTCATCGGCGCGCAT
TTCTTCATATTTACAGGCATGGTCAACTGCAATGCGAGAAATCGTGATGT
GATTTCCCTCTCAAAACATGTCGCGGCCACGGCTTCACCCAAAACTTCTA
CCTCCACCTCCTCCTCCTCCCCGTCTTCTTCTACTTCTTCTTTCCCCTCC
TCCTCCTCCTCCAATCTCTCTCCACCTCCAAGCGCCGTGCAAGCATCTCC
TTCCTTTGTGAGCCTTCCAAGAATGGTACCTCCCAATGCCACGATCACTC
TAGGGCACAAAGGGGTGCCCGTGCATGAGTTGCCGGAAGAGGCTCGGGTC
CGTGTACCACTCTGCAGTGCGCGCGGGAAGGTATGCGTCGCAGGCATAAA
GCGAAAGCTTTCTGATGGCGGTGCGAAGCTATGGCAAGAAGAGAATGCTG
AAAAGACGAATGTGGGGATACTGCGCCCAAGTCACGACGCCTGGGGCATT
AAAAAAATTGTGTTCATTTACTGCGATGACTTCTTGCGGCGATGCTTCGA
GATGCCATGGTTCCATGATCCGGAATGGCAAGCCCTGCTTCTGCCAGTAT
TTCAAGCCCTTAATGTAGCTCCACGCATGGTCGTACGCTGCCTCCTCGCT
TCCATGCCTCCGGGCATTGCAATCCCCCCCCACCACGACACCGGCTACTG
GGTGCACTATTCACACCGCATTCATCTCCCCATCGAGACTGATCCTGCTC
GTATCGTGTTCCGAGTGGGGCCTAGCAAGGATCGCCTTCAGAGGTACGAC
CTCCCGGAAGGCTGCTTGGTGGAGCTGAACAACCAAGCGAAGCACAGCGT
GGACAATCTATGGGACCGGTCTCGCGTGCATTTAATTTTGGATTATTTGG
AAAAGGACAGCATCGAGAGGAGTATCCTGCCCCCTGGCGCCAAACTACAT
CAGACTCGACGATCCATAGATCTAGAAAGCGAGCATGGATCCCGGCCATG
CCCGAGCTTTCTGATCCTGGGTGCCCAGAAAAGTGGGACCACCTCTTTGT
ACGAATACCTGTGCCAGCATCCCTTGGTCCTGAGAGCAAGGCGCAGGGAG
ACGCATTACCTGGACTGGCGGTGGCGGCGAGAGGAACATTTGACGTGGGA
AGATCACCGAGAAACCTACTTGCGTTTTTTCCACGCGGCTTTGCTGAACG
AGAACCCATCTTGTATGACAGGCGAGTCCACGCCCAGTTACCTCCTGCAC
AGCGACATTGTCTTGCCCCGTGTTCGCAAGTTGGCACCCACTGCCAAGTT
GTTGGTGATCCTGCGCTGTCCCGTCGCCAGGGCATATTCCCAGTACCAGA
TGGTGACCGACCCGGAGGGCAGCGTGGAGCAGAAGAAGGCTCGGGGCAGT
CACTGGTTGGGAAAGTCCTTCGAGGAGGTTGTTGAGGCCGAGATGCAAGA
CCTGGAGAGGCACAGAGTTCATCCGACCATGAACTATCAGGAGTTTAAGG
ACGGGTATTTGTCTTCGCGGCCCCTGGGCCATGGGAGCCACTCGCTCTTA
GGTCGAGGATTGTATGCCCTGCAGCTGCAGCCGTGGCTCGAAGCATTCGG
CCGAGATCAGTTGATGGTTATGTTCATGGAAGACATGGCAAGTCATAACG
CTGTGCAGGCACAATTAGGAAAGGTGTTTGATTTTCTGGGTTTACCACCG
CATTCCATCATTGATACGCATGCTAAGAATACACGGGCATATACGCCAAT
GGACGAGAGAACAAAGGCTAGACTGAGTGCTTTTTATGCACCTTTTAACC
AGCAGCTTTTCCAAATTTTAAATGTTCACGAGCGAAGGTGGGAGGCGCGA
GAGTAGTTTAAAATATGTAAAGCAAGGAATAAAGCAATCCTAGTAATCA

Coding sequence (CDS) from alignment at CM002458.1:769260..771308-

>rna2048 ID=rna2048|Name=rna2048|organism=Nannochloropsis gaditana|type=CDS|length=1788bp|location=Sequence derived from alignment at CM002458.1:769260..771308- (Nannochloropsis gaditana)
ATGGTCAACTGCAATGCGAGAAATCGTGATGTGATTTCCCTCTCAAAACA
TGTCGCGGCCACGGCTTCACCCAAAACTTCTACCTCCACCTCCTCCTCCT
CCCCGTCTTCTTCTACTTCTTCTTTCCCCTCCTCCTCCTCCTCCAATCTC
TCTCCACCTCCAAGCGCCGTGCAAGCATCTCCTTCCTTTGTGAGCCTTCC
AAGAATGGTACCTCCCAATGCCACGATCACTCTAGGGCACAAAGGGGTGC
CCGTGCATGAGTTGCCGGAAGAGGCTCGGGTCCGTGTACCACTCTGCAGT
GCGCGCGGGAAGGTATGCGTCGCAGGCATAAAGCGAAAGCTTTCTGATGG
CGGTGCGAAGCTATGGCAAGAAGAGAATGCTGAAAAGACGAATGTGGGGA
TACTGCGCCCAAGTCACGACGCCTGGGGCATTAAAAAAATTGTGTTCATT
TACTGCGATGACTTCTTGCGGCGATGCTTCGAGATGCCATGGTTCCATGA
TCCGGAATGGCAAGCCCTGCTTCTGCCAGTATTTCAAGCCCTTAATGTAG
CTCCACGCATGGTCGTACGCTGCCTCCTCGCTTCCATGCCTCCGGGCATT
GCAATCCCCCCCCACCACGACACCGGCTACTGGGTGCACTATTCACACCG
CATTCATCTCCCCATCGAGACTGATCCTGCTCGTATCGTGTTCCGAGTGG
GGCCTAGCAAGGATCGCCTTCAGAGGTACGACCTCCCGGAAGGCTGCTTG
GTGGAGCTGAACAACCAAGCGAAGCACAGCGTGGACAATCTATGGGACCG
GTCTCGCGTGCATTTAATTTTGGATTATTTGGAAAAGGACAGCATCGAGA
GGAGTATCCTGCCCCCTGGCGCCAAACTACATCAGACTCGACGATCCATA
GATCTAGAAAGCGAGCATGGATCCCGGCCATGCCCGAGCTTTCTGATCCT
GGGTGCCCAGAAAAGTGGGACCACCTCTTTGTACGAATACCTGTGCCAGC
ATCCCTTGGTCCTGAGAGCAAGGCGCAGGGAGACGCATTACCTGGACTGG
CGGTGGCGGCGAGAGGAACATTTGACGTGGGAAGATCACCGAGAAACCTA
CTTGCGTTTTTTCCACGCGGCTTTGCTGAACGAGAACCCATCTTGTATGA
CAGGCGAGTCCACGCCCAGTTACCTCCTGCACAGCGACATTGTCTTGCCC
CGTGTTCGCAAGTTGGCACCCACTGCCAAGTTGTTGGTGATCCTGCGCTG
TCCCGTCGCCAGGGCATATTCCCAGTACCAGATGGTGACCGACCCGGAGG
GCAGCGTGGAGCAGAAGAAGGCTCGGGGCAGTCACTGGTTGGGAAAGTCC
TTCGAGGAGGTTGTTGAGGCCGAGATGCAAGACCTGGAGAGGCACAGAGT
TCATCCGACCATGAACTATCAGGAGTTTAAGGACGGGTATTTGTCTTCGC
GGCCCCTGGGCCATGGGAGCCACTCGCTCTTAGGTCGAGGATTGTATGCC
CTGCAGCTGCAGCCGTGGCTCGAAGCATTCGGCCGAGATCAGTTGATGGT
TATGTTCATGGAAGACATGGCAAGTCATAACGCTGTGCAGGCACAATTAG
GAAAGGTGTTTGATTTTCTGGGTTTACCACCGCATTCCATCATTGATACG
CATGCTAAGAATACACGGGCATATACGCCAATGGACGAGAGAACAAAGGC
TAGACTGAGTGCTTTTTATGCACCTTTTAACCAGCAGCTTTTCCAAATTT
TAAATGTTCACGAGCGAAGGTGGGAGGCGCGAGAGTAG

Synonyms

Publications