rna2046, rna2046 (mRNA) Nannochloropsis gaditana

Overview
Namerna2046
Unique Namerna2046
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2260
Alignment locationCM002458.1:764658..765628 -

Link to JBrowse

Properties
Property NameValue
Productmagnesium-dependent phosphatase 1
Orig transcript idgnl|cribi|Naga_100182g9.942.mrna
Orig protein idgnl|cribi|Naga_100182g9.942
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:764658..765628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100182g9gene1957Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2046rna2046-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28632.1cds2038Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2046 ID=rna2046|Name=rna2046|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp
GATGTATGAACGTGAGCAATCAGAGGAGATAATAATGCGTCCTAGGATGC
CCAAATTTTCCCGCCGCTACCAAAATCAGTGCCCTTCAAATGGTCTAATC
ACGCGATTAAGTTTTGCCTACAGTTCTCTCGTCCCTATCAGTACGTAAGA
TTCCAATTTTAAGGGAAGATTTTTCTTCGAGCCCCAAGCGGAAGCGTTCC
TTTTCTCGATCCTCCTGCGGCATCACTTGCTTTCAAAGTACGCCATATCA
ACGTAATGCATTTCGCATCACAATGAAAGCACTAAGCTTCCAAATGTGCG
TCTAAATGTCGAATTTTAACCAATCATCTTAGATATCCTTGTCTTGCCTA
GCGAGTCGACCTCAACCGGGGGCCTCCCCGGTAACGGGCAAGCCCCTCCA
CCGGACCATGGTCATAGGGCCTAACTCACCGGACGAAAATGTAACAAGCC
CTAGCGCCTCAGAGACATCCAAATCATACACAGCGGAATCTTATATTGCT
TCTAATGCCAACTTAATGCCGCAGTCAACCGCATTGGCGACTTTCAAAGA
CATTGAGGCTAAAGTCGGGTGGAACCCCAGCTTGCTGGCCAGTCCGTACT
CCCAGACCGTGCGTTACTTGCAAGTTACGGACCAAGACGCTCGTCCTGCA
CCTGCCAAAGGCATATGGGTTGACGTGGTGGGAAGAAACAACAGGGCGGT
GAGACGAAACATTGGTTTGCTTCGCTTTTTAGGCCCAGTCCATTTTAGTA
AGGGGACCTGGGCTGGCATCGAGGTGCAGGGCGCTATCGTAGCCGACAAC
GCTAATGACGGAAGCGTGGACGGTGTACGCTACTTTTCGTGCCTGTCTGG
GCACCAAGGACTGCTGGTCGACGTCAAGTGGGTACGTAAGTCCTTCCTTC
AAAAGGCACCTCACATTGCAGAGCTCAGAGGACGCCCGCCTCGTGCCTTC
TCATCGGCAAACGCGGCATCTCTAGCGACTTCCCGCACTGTTTTGTTGAC
TGCTCACCGTCTCCCAGCTATCACTGGTCATAATCAATTGCCGACGCTTT
ACAAAAAGCTGGAGGATTTTTTGGGGCTTGACTCCAAGATGCTCCCATCC
GACGCGCTAAAAAGCCCACAAGGAGTTATCCGCGACCTAACGTATGCCAC
TACTAGGGCTGAAAAACGGCGACTCATGAAACTTTTGCAAGAGAAAGAGG
AAGAAGAAATCCGCAAGCGCAGGATACAGGAGCAAAGAGAAGCAGCCGCA
CGGCCTCTGCTCGAATTGGCAGAGAAAGCTCGCCAAGCATTGCTAGCCTC
CCTGCCACACAAAAGACACTTAGTGCACAGGGGGAAAAGGGGAACCGCGC
CCCCCCCTTTAGATTCCACCAGGAGGGCTTTGTCGACGCCCTTGCCCAAG
ACGGACGCGTCGCGGCGACCGAAGATAGGCAGCAGTACGACGGTATGGCC
ATCGCATCACTTGCTGCTCACCACAATGTCTCCCGAGACGTCTTTGTATA
TTAATGTCCTGTCCATTTCTTATCCACAGACTCCACTTCCGCTGCCTGTG
CCGGAAATGTCTCTCCGGCTTCCAACGTTGACGTCGCGGGACGAGGACAG
GATCGAGTCGCTTGAGTCACGGGCGCAATCTCACGATCACGGATCTTCGC
CCACTAATGACCCTCAGTCGGTGCTGCGGACGAATTTAGGCACGTCGACA
GCCTATACACACGAAAACGATGGAGGAAGTACCGGCTGTCGAGAAGACAT
GGACGCAGTCAACCTCATTGATGAATGCATGAAATTGGTGGATGAATCAT
CCAGCACAAAGTTCGCACAGTCTCTCCCTCATTTCTTGCAGAACGTCAAG
CTCTATTTCGAAGCCATGGCGGTGAGCGACGAGAAGGGCTTGAGGGCGAG
GGGGGGCGTAACTTGGTGAAAGCTCTGCGTAACATCACTAATGCACCCTC
CGGGCACAGTTACCGACGTGTGGAGCCTAAATTTTCCGGTGTGAAAAGAA
GCTGCGAATTCCTATGTACATTAATTGTCTTTTTCCATGCGGACGTTCGA
TATTTTCGTTTTTGGAGTTTACATTCCTATGGCGCCCAGAACTCGCTCAC
CGTGTCCTACTAGACGCAACCCTCTCTTCAAGATAAAACAATCAACACTT
TCCGATGCCTGTGTCCCGGTCGCAACGGTTTTCATTGCGCGGAAAAGTTA
ACTTGACTCAAGAAAACGTACGAAAGGAAATATTTTGGCTGGCTGGCTGG
CTGGCAACCC
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protein sequence of rna2046

>rna2046-protein ID=rna2046-protein|Name=rna2046|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MAELNVAASSSLPVKEKALQLLRAGPLPKLIVLDLDYTLWQAYVDSTSGP
PFVYHKQEQAVLDKRKWEIEAFEHTRPLLQALMEANTQVAFASRTEEPAW
ANEVISIFEIDEQGRCLSDYAQAWEIYPTSKEKHFHALARKLNVNFSEML
FFDDEKRNIHEVSQLGVISVHCKDGISLSTFEEGLLEFRCGNSIEHCLVE
FVMYYFSWYLSNYVHICHQVPFDC
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mRNA from alignment at CM002458.1:764658..765628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2046 ID=rna2046|Name=rna2046|organism=Nannochloropsis gaditana|type=mRNA|length=971bp|location=Sequence derived from alignment at CM002458.1:764658..765628- (Nannochloropsis gaditana)
ATGGCGGAGCTAAATGTTGCGGCCTCCTCTTCGCTCCCCGTCAAGGAGAA
AGCCCTTCAGCTGTTGCGAGCAGGCCCCCTACCAAAGCTCATTGTCTTAG
ATTTGGATTACACCCTCTGGCAGGCTTACGTCGATTCAACAAGCGGTCCA
CCTTTTGTCTACCACAAACAGGAGCAAGCAGTCCTTGATAAGTAAGTCTC
TCGCCGTTTTCACGTAATCCTCGAGTCAGATTTCTGTCTGTTCAGTCAGG
CCCAACACATTCCTGATTGCCACACTGCTTTTATTCGTTGTGATCTTTTG
GTTGTCGTGACTTGTCCTCTCGGTTTATAAGTGCTCGTGTTGTTGCCGAT
TCGACAGTGTAGCAACATGTTCGCTCTTGACTGATGTGAACTTTTTAACA
GACGAAAATGGGAGATCGAAGCGTTTGAACATACTCGACCATTGCTACAA
GCACTTATGGAGGCAAATACGCAGGTGGCCTTTGCATCTCGCACAGAAGA
GCCAGCTTGGGCAAATGAAGTTATAAGCATATTTGAAATTGACGAACAAG
GACGATGCCTAAGCGACTACGCCCAGGCCTGGGAAATATACCCCACTTCT
AAAGAGAAGCATTTTCACGCTCTGGCACGAAAATTGAATGTTAATTTCAG
CGAAATGTTATTCTTTGATGATGAAAAACGGAATATCCACGAAGTATCTC
AGTTAGGCGTTATATCTGTCCATTGCAAGGATGGCATTTCCCTTAGCACT
TTCGAGGAAGGACTTCTAGAATTTCGTAAGCGGCTCAGTATCTTCGATGA
TACTCAGGGAACTAAAGTTGATATCTGAAACTCATTCTTTGCCGGCGTTG
AGGGGCCATAGGGTGTGGGAACTCCATTGAGCATTGTCTTGTAGAATTTG
TCATGTACTACTTTTCATGGTATCTATCCAACTATGTGCATATTTGTCAT
CAAGTGCCTTTTGACTGTTAG
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Coding sequence (CDS) from alignment at CM002458.1:764658..765628-

>rna2046 ID=rna2046|Name=rna2046|organism=Nannochloropsis gaditana|type=CDS|length=2025bp|location=Sequence derived from alignment at CM002458.1:764658..765628- (Nannochloropsis gaditana)
GGTGTGGGAACTCCATTGAGCATTGTCTTGTAGAATTTGTCATGTACTAC
TTTTCATGGTATCTATCCAACTATGTGCATATTTGTCATCAAGTGCCTTT
TGACTGTTAGACGAAAATGGGAGATCGAAGCGTTTGAACATACTCGACCA
TTGCTACAAGCACTTATGGAGGCAAATACGCAGGTGGCCTTTGCATCTCG
CACAGAAGAGCCAGCTTGGGCAAATGAAGTTATAAGCATATTTGAAATTG
ACGAACAAGGACGATGCCTAAGCGACTACGCCCAGGCCTGGGAAATATAC
CCCACTTCTAAAGAGAAGCATTTTCACGCTCTGGCACGAAAATTGAATGT
TAATTTCAGCGAAATGTTATTCTTTGATGATGAAAAACGGAATATCCACG
AAGTATCTCAGTTAGGCGTTATATCTGTCCATTGCAAGGATGGCATTTCC
CTTAGCACTTTCGAGGAAGGACTTCTAGAATTTCATGGCGGAGCTAAATG
TTGCGGCCTCCTCTTCGCTCCCCGTCAAGGAGAAAGCCCTTCAGCTGTTG
CGAGCAGGCCCCCTACCAAAGCTCATTGTCTTAGATTTGGATTACACCCT
CTGGCAGGCTTACGTCGATTCAACAAGCGGTCCACCTTTTGTCTACCACA
AACAGGAGCAAGCAGTCCTTGATAAGGTGTGGGAACTCCATTGAGCATTG
TCTTGTAGAATTTGTCATGTACTACTTTTCATGGTATCTATCCAACTATG
TGCATATTTGTCATCAAGTGCCTTTTGACTGTTAGACGAAAATGGGAGAT
CGAAGCGTTTGAACATACTCGACCATTGCTACAAGCACTTATGGAGGCAA
ATACGCAGGTGGCCTTTGCATCTCGCACAGAAGAGCCAGCTTGGGCAAAT
GAAGTTATAAGCATATTTGAAATTGACGAACAAGGACGATGCCTAAGCGA
CTACGCCCAGGCCTGGGAAATATACCCCACTTCTAAAGAGAAGCATTTTC
ACGCTCTGGCACGAAAATTGAATGTTAATTTCAGCGAAATGTTATTCTTT
GATGATGAAAAACGGAATATCCACGAAGTATCTCAGTTAGGCGTTATATC
TGTCCATTGCAAGGATGGCATTTCCCTTAGCACTTTCGAGGAAGGACTTC
TAGAATTTCATGGCGGAGCTAAATGTTGCGGCCTCCTCTTCGCTCCCCGT
CAAGGAGAAAGCCCTTCAGCTGTTGCGAGCAGGCCCCCTACCAAAGCTCA
TTGTCTTAGATTTGGATTACACCCTCTGGCAGGCTTACGTCGATTCAACA
AGCGGTCCACCTTTTGTCTACCACAAACAGGAGCAAGCAGTCCTTGATAA
GGTGTGGGAACTCCATTGAGCATTGTCTTGTAGAATTTGTCATGTACTAC
TTTTCATGGTATCTATCCAACTATGTGCATATTTGTCATCAAGTGCCTTT
TGACTGTTAGACGAAAATGGGAGATCGAAGCGTTTGAACATACTCGACCA
TTGCTACAAGCACTTATGGAGGCAAATACGCAGGTGGCCTTTGCATCTCG
CACAGAAGAGCCAGCTTGGGCAAATGAAGTTATAAGCATATTTGAAATTG
ACGAACAAGGACGATGCCTAAGCGACTACGCCCAGGCCTGGGAAATATAC
CCCACTTCTAAAGAGAAGCATTTTCACGCTCTGGCACGAAAATTGAATGT
TAATTTCAGCGAAATGTTATTCTTTGATGATGAAAAACGGAATATCCACG
AAGTATCTCAGTTAGGCGTTATATCTGTCCATTGCAAGGATGGCATTTCC
CTTAGCACTTTCGAGGAAGGACTTCTAGAATTTCATGGCGGAGCTAAATG
TTGCGGCCTCCTCTTCGCTCCCCGTCAAGGAGAAAGCCCTTCAGCTGTTG
CGAGCAGGCCCCCTACCAAAGCTCATTGTCTTAGATTTGGATTACACCCT
CTGGCAGGCTTACGTCGATTCAACAAGCGGTCCACCTTTTGTCTACCACA
AACAGGAGCAAGCAGTCCTTGATAA
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Synonyms
Publications