rna2043, rna2043 (mRNA) Nannochloropsis gaditana

Overview
Namerna2043
Unique Namerna2043
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length648
Alignment locationCM002458.1:759957..760285 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100182g6.951.mrna
Orig protein idgnl|cribi|Naga_100182g6.951
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:759957..760285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100182g6gene1954Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2043rna2043-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28641.1cds2035Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2043 ID=rna2043|Name=rna2043|organism=Nannochloropsis gaditana|type=mRNA|length=648bp
ATGGGTGCTTCACGGCTTCTGCACCTCTGCAGCAACCTGCTTCTCCTGGT
TATCACGACAGCTTACGTTGTACCCTCCATGACAACAACTCCTACGTCTT
GGGCCAGATATGCAAAAGAAAAGGGTGTTGCGGTACGGCGAGAAGCAGTA
GGATTTACAGGCATGCTGGGGGCGGTGGCACTGGCCACGGGAGGCAGCAC
GGCAACGACCTTGGCATGGCCGCTGCAGGTCCTGGCGGAGGAATCCCCTG
TCAAAGTGAGGAAGGTGAACCCCAACAAAATCCGAGAGACACCCAATGGT
GTGAAGTACGTGGACGTCAAAGTTGGAGAGGGCGAGTCGCCCCGTGGAGG
CGATTACGTGATCATCACCTACATCGGCCAGCTTTCAGATGGCACAATCT
TCGATGGATTGCATGGTCCGGGGAAGAAGCCCTTGGCATTTAAGATCGGC
GCTAAGCAAGTCATCCCTGGTTTGGAGGAAGCGCTATTGAGCATGCAAGC
TGGTGGAGAACGGCAATTGCTGGTGCCGGCAGACTTGGCGTTCGGAGAGA
AGGGTGTATGTACGGAAAAGGGAGAGTGTCTAGTACCACCCAACACGAAC
GTCAAGTACAACGTCATTCTAAAGCGGGTAGCTGTTTCTCCTATTTAG
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protein sequence of rna2043

>rna2043-protein ID=rna2043-protein|Name=rna2043|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MNIRECHGPSVAGIRRFRKRIDSLVGPQVRTGRLASLAWTRDVTLRLPAV
RMIYSVEEYLFLGDCFERDWSRVILFGRRFSWETRT
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mRNA from alignment at CM002458.1:759957..760285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2043 ID=rna2043|Name=rna2043|organism=Nannochloropsis gaditana|type=mRNA|length=329bp|location=Sequence derived from alignment at CM002458.1:759957..760285+ (Nannochloropsis gaditana)
ATGAATATCAGGGAGTGCCACGGGCCGAGCGTGGCAGGCATAAGGAGGTT
TAGGAAACGTATCGATTCATTAGTAGGCCCACAGGTTCGCACGGGGAGGT
TGGCGTCTCTGTGTCGCCACCCTTACCAGCACAGTCAGGGCTGTGACTGG
CTGAACTGACCATGGGGACTTCAATGAGCGCATGGACAAGAGATGTCACG
TTACGGCTACCAGCTGTCCGTATGATTTATTCAGTGGAAGAATATTTATT
TTTAGGCGACTGTTTTGAGAGAGACTGGTCCAGGGTGATTTTATTTGGCC
GCCGTTTCTCGTGGGAAACAAGGACGTAA
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Coding sequence (CDS) from alignment at CM002458.1:759957..760285+

>rna2043 ID=rna2043|Name=rna2043|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at CM002458.1:759957..760285+ (Nannochloropsis gaditana)
ATGAATATCAGGGAGTGCCACGGGCCGAGCGTGGCAGGCATAAGGAGGTT
TAGGAAACGTATCGATTCATTAGTAGGCCCACAGGTTCGCACGGGGAGGT
TGGCGTCTCTCGCATGGACAAGAGATGTCACGTTACGGCTACCAGCTGTC
CGTATGATTTATTCAGTGGAAGAATATTTATTTTTAGGCGACTGTTTTGA
GAGAGACTGGTCCAGGGTGATTTTATTTGGCCGCCGTTTCTCGTGGGAAA
CAAGGACGTAAATGAATATCAGGGAGTGCCACGGGCCGAGCGTGGCAGGC
ATAAGGAGGTTTAGGAAACGTATCGATTCATTAGTAGGCCCACAGGTTCG
CACGGGGAGGTTGGCGTCTCTCGCATGGACAAGAGATGTCACGTTACGGC
TACCAGCTGTCCGTATGATTTATTCAGTGGAAGAATATTTATTTTTAGGC
GACTGTTTTGAGAGAGACTGGTCCAGGGTGATTTTATTTGGCCGCCGTTT
CTCGTGGGAAACAAGGACGTAA
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Synonyms
Publications