rna2039, rna2039 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2039
Unique Name	rna2039
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1491
Alignment location	CM002458.1:751873..753936 +

Link to JBrowse

Properties


Property Name	Value
Product	stress-inducible protein
Orig transcript id	gnl\|cribi\|Naga_100182g1.948.mrna
Orig protein id	gnl\|cribi\|Naga_100182g1.948
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:751873..753936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100182g1	gene1950	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2039	rna2039-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28638.1	cds2031	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:751873..753936+
coding sequence from alignment at CM002458.1:751873..753936+

mRNA sequence

>rna2039 ID=rna2039|Name=rna2039|organism=Nannochloropsis gaditana|type=mRNA|length=1491bp
ATGTATGCGAAGCAACCCACAGTGTGTCAACTTCGTTGCCCATTCACGCC
TTCTGACTTTATTGCCTTATCGGACTTTCCGGAAATTGGAATAGACGGGT
CCGGGGCGCTTTGGATATCGAAGCTGTTGGAAAGTGCAAGTCGCCTGGCA
GCCCCTTCATCACCAGGAATAGGCGCTAAAAAACCTTCGCAAGCCAGCAG
AGCGGACGATGACGTTTATGATCGGAATTCGTTTTGTGAGTTGATGGACT
TACGTTCCTCCTTCAACGCAGTGCCCCGTGCTCGCTTCTCGGCCGCCCGG
TCGGCATCTAACATGTACGAGCCATTGGGCACTGCAGCACAGAACCCCTT
CCTCAACCGTTCCGCTCTCAAACTTGCCAACATAGATGCAATAATTCCTT
TAAAACCAGTCTTGGTCTCACAAGGCATGGATGTCGAAGACTCTCTCCCT
ACCTTCACATTTCTAGACCTTTGCGGAGGGCCCGGAGGCTTCTCAGAGTA
CTTGTTGAGACGACAAGATCTTGTCAAAGAGGTACATGGGTGGGGAATGA
CGTTGTGCGATTGTAAGTGTGGATGGGACAGGGGAAAATTGGGTGAATGG
ATTGTGGACGAAAACAAGAAAAATGCGAGAACATTCGAGAGCACCCCCAA
TGAGGACCATCAGTCGGGCATTTTCCCTTCGAAAAGACGCAAGTGCATGT
CAGCTTTGGCATCACTGCAGACAAGAGCCCTTCACTTAGTCTATGGGTCT
GATGGAAGTGGTGACCTGTGCCAGCCCGACAATGTTCAGTTCCTTGCCGA
CTCGATGGCGGTGCGAGTAGACGTTGTTGTGGCGGACGGAGGCTTTGCCG
GGGCTAGGGGACGGTTTGATCAGGAGGCTGCCATGCTGCCCCTCTTGATT
AGCGAGGCATCCGCGATGGTCCAAACGCTTCAACCGAAAGGATGCTTTGT
TTGCAAGTTTTTTGACATGACGTTGCCAGGGACGGTTCAGCTCGTCGCTC
TTCTGGCTTTGCTCTTTGAGCGAGTTACCGTCGTCAAGCCAGTAATGAGC
CGGCCAGCAAGCTCCGAGAGGTATTTCCTAGGGCAGGGGTTCCGCGGTTT
CGACGAGGAGGAAAGCAAGGAGGGCGCGGTTAGCACGCGCCAAGCAAGGG
TCCTCCTGAACGAAATGCTCGCCCTGGCAACAGCTGGACAGACCTGCGGG
ACACCGGTCGACGGGGGAGAGGGGGGGGGGCAGGCGTTGATAACATCGAT
GCGACAAGCCCTGGCCCGAGGCTCGCCATTTGTTGCTTGGCTGCGTGCAG
TGAACGACAAGCTCATGCGCTCGCAGGTGGAAGCGTGCTATGCCATCCAT
GCAAGGTTGGAAATGGAGGAGGGCGAAGGAGAGGGCGAGAGAAGCGCACA
TGAAGAGGAAGAGAATGCGATCGATGTAGACAGCTACCGACAAATATGGG
GTCTAGACAAGCTGCACAATTCACACAGGGAAGAACAATGA

protein sequence of rna2039

>rna2039-protein ID=rna2039-protein|Name=rna2039|organism=Nannochloropsis gaditana|type=polypeptide|length=417bp
MAGATEDWTQAKAKGNQAYQAGNHLLAVEHFTTAIQLTPKDGDHQLHILY
SNRSAARLNLGLAYEALADAKKCTEIQPAFAKGWSRVGAAMYRMGRYPEA
VAAYTEGLVQAPGNADLTRALAEASHAAQEMRGPPRRDLLPHLRAFFLKD
RLATRLFLPRVFMLLNGLIYLIPFLPAGWGLASYRRVLYTAAVLHLYALY
NAHGFPKFTIDFLARCMQDVHASPLFLSLLLLSFRSKTYLPGVAALLLTE
GMQVLCFLNQLLALARPAAEKALSARFMGLAMRYTQNPRYGALPTPQARW
AALFTASASHAAALEIGTGLFLGLELLTPRRNIFGIFLFWQYLQMRYMLD
QSGVVKGHFKRLDDFLLRLTSHPSCPAFLGRGYELLRGYLGRAVAIPDPQ
QQRRPPQGGGMPRCCVM

mRNA from alignment at CM002458.1:751873..753936+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2039 ID=rna2039|Name=rna2039|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp|location=Sequence derived from alignment at CM002458.1:751873..753936+ (Nannochloropsis gaditana)
AGCCCTGATATGACTTTTCGGCCTTGCCATACTTGTAGGGATTGACGATT
GATCTTTTGGGTATCCTGTCGTGCAAACGGTGGCGATGGCTGGGGCAACT
GAGGATTGGACGCAGGCCAAGGCCAAGGGCAACCAGGCCTATCAGGCGGG
CAATCATCTATTAGCCGTGGAGCACTTTACCACCGCGATCCAACTTACCC
CTAAGGATGGAGATCATCAACTGCATATTTTGTACTCTAACCGATCCGCT
GCCCGGTTAAATCTGGGACTGGCATACGAGGCTCTGGCTGATGCCAAGAA
ATGTACAGAGATCCAGCCAGCCTTCGCGAAAGGCTGGAGCCGCGTAGGCG
CTGCCATGTACCGCATGGGCCGATATCCTGAAGCGGTGGCAGCGTATACT
GAAGGTCTGGTCCAGGCACCGGGAAACGCGGTAAGGGCACCTATTTGGAG
GGGAATGAGGTCGGCGCAGAGGagtggatggagggcggcACGTACCTCTC
AAATGTCTCTTTCGCACCTTGCCCCAGTACCCTTGCCTCCTAAGTGGGCA
CACATGCATTCTCGGGACTCCCATCTCATATTTGCTTCCCCGTATTGTTT
ATTTCTGTCTATCCTGACTGGGTAGAAGGCAATGTATGGCGTTGCGTCGC
GGACGCTCCCTCCAGGACCCGCCCCCTTGATAGCCTTGGTCTGTTTTTCc
cctcacttcccccccgtATGGCAACGCTTCTATGCTTGCGCACTTCATTT
TACTAGGATCTCACTCGGGCGCTCGCCGAAGCTAGCCATGCCGCCCAGGA
GATGCGGGGCCCTCCTCGCAGAGACCTCTTGCCCCATCTGCGAGCTTTCT
TCCTCAAGGATCGGCTGGCCACTcgacttttccttccccgcgtcTTCATG
CTACTCAACGGCCTTATCTATCTAATCCCTTTTCTGCCTGCAGGCTGGGG
TCTGGCCAGCTACCGTCGCGTGCTGTACACGGCGGCAGTCCTCCATCTCT
ACGCTCTCTACAACGCGCATGGCTTCCCGAAATTTACGATAGACTTCCTC
GCGCGATGCATGCAAGACGTACACGCGTCCCCCctgttcctctcccttct
cctcctctccttcaggAGTAAGACGTATCTGCCGGGCGTGGCCGCGCTCC
TACTCACCGAGGGCATGCAggtcctctgcttcctcaaccagctcctcgct
ctcgcgCGACCAGCAGCAGAGAAAGCTCTCTCGGCACGATTCATGGGCCT
AGCCATGCGCTACACCCAAAATCCGCGGTACGGCGCGCTTCCTACTCCCC
AGGCGCGGTGGGCAGCGCTCTTCACGGCTTCTGCCTCCCACGCGGCCGCC
TTGGAGATCGGAAcgggcctcttcctcggacTCGAGCTCCTCACTCCACG
ACGGAACATCTTTGGCATCTTTCTCTTCTGGCAGTACCTCCAGATGCGCT
ACATGCTGGACCAAAGCGGCGTCGTGAAGGGCCACTTCAAACGGCTCGAC
GACTTCCTGCTCAGGCTGACGAGCCATCCCTCATGTCCAGCATTCCTTGG
ACGGGGGTACGAGCTTCTTCGCGGATATCTTGGAAGGGCTGTGGCCATCC
CAGATCCACAGCAAcagcggcggccgccgcaagggggggggatgccgCGT
TGCTGTGTCATGTGAGACGGCAGCCAGGGTGTCGCGacgggcgagagaga
ggataCGTAGCCCAGGAGGTTGTGTTGGTCTGGCACGGCTGACAAGAACA
ACACCGCGGAAGGGTCTTGATGGTGTTTGCGAAGAGCGCACCACCTAAGC
AAGAGTGGCACGCTTTCCAAGATTGCTACTCGCGGACTAAGGAATGATCA
AGAAAGCTCGGGCTCGTCTGTTCACTTTTTGATTTCTGTTCAAACTTTTG
ACTCTTGCTGACAAAATTGAAAACCAATATCTTCCGGGATTCCCTTCGCA
TATTTTAACTTGTGCATACAAataaagggggggaggtacgATAGCGATCG
CTTCACTCTGCCCTAGCACCATGGTGACGCTTTGTGCCCCTTCCATCGTT
TCGTTTTAAGAAGA

Coding sequence (CDS) from alignment at CM002458.1:751873..753936+

>rna2039 ID=rna2039|Name=rna2039|organism=Nannochloropsis gaditana|type=CDS|length=2508bp|location=Sequence derived from alignment at CM002458.1:751873..753936+ (Nannochloropsis gaditana)
ATGGCTGGGGCAACTGAGGATTGGACGCAGGCCAAGGCCAAGGGCAACCA
GGCCTATCAGGCGGGCAATCATCTATTAGCCGTGGAGCACTTTACCACCG
CGATCCAACTTACCCCTAAGGATGGAGATCATCAACTGCATATTTTGTAC
TCTAACCGATCCGCTGCCCGGTTAAATCTGGGACTGGCATACGAGGCTCT
GGCTGATGCCAAGAAATGTACAGAGATCCAGCCAGCCTTCGCGAAAGGCT
GGAGCCGCGTAGGCGCTGCCATGTACCGCATGGGCCGATATCCTGAAGCG
GTGGCAGCGTATACTGAAGGTCTGGTCCAGGCACCGGGAAACGCGGATCT
CACTCGGGCGCTCGCCGAAGCTAGCCATGCCGCCCAGGAGATGCGGGGCC
CTCCTCGCAGAGACCTCTTGCCCCATCTGCGAGCTTTCTTCCTCAAGGAT
CGGCTGGCCACTcgacttttccttccccgcgtcTTCATGCTACTCAACGG
CCTTATCTATCTAATCCCTTTTCTGCCTGCAGGCTGGGGTCTGGCCAGCT
ACCGTCGCGTGCTGTACACGGCGGCAGTCCTCCATCTCTACGCTCTCTAC
AACGCGCATGGCTTCCCGAAATTTACGATAGACTTCCTCGCGCGATGCAT
GCAAGACGTACACGCGTCCCCCctgttcctctcccttctcctcctctcct
tcaggAGTAAGACGTATCTGCCGGGCGTGGCCGCGCTCCTACTCACCGAG
GGCATGCAggtcctctgcttcctcaaccagctcctcgctctcgcgCGACC
AGCAGCAGAGAAAGCTCTCTCGGCACGATTCATGGGCCTAGCCATGCGCT
ACACCCAAAATCCGCGGTACGGCGCGCTTCCTACTCCCCAGGCGCGGTGG
GCAGCGCTCTTCACGGCTTCTGCCTCCCACGCGGCCGCCTTGGAGATCGG
AAcgggcctcttcctcggacTCGAGCTCCTCACTCCACGACGGAACATCT
TTGGCATCTTTCTCTTCTGGCAGTACCTCCAGATGCGCTACATGCTGGAC
CAAAGCGGCGTCGTGAAGGGCCACTTCAAACGGCTCGACGACTTCCTGCT
CAGGCTGACGAGCCATCCCTCATGTCCAGCATTCCTTGGACGGGGGTACG
AGCTTCTTCGCGGATATCTTGGAAGGGCTGTGGCCATCCCAGATCCACAG
CAAcagcggcggccgccgcaagggggggggatgccgCGTTGCTGTGTCAT
GTGAATGGCTGGGGCAACTGAGGATTGGACGCAGGCCAAGGCCAAGGGCA
ACCAGGCCTATCAGGCGGGCAATCATCTATTAGCCGTGGAGCACTTTACC
ACCGCGATCCAACTTACCCCTAAGGATGGAGATCATCAACTGCATATTTT
GTACTCTAACCGATCCGCTGCCCGGTTAAATCTGGGACTGGCATACGAGG
CTCTGGCTGATGCCAAGAAATGTACAGAGATCCAGCCAGCCTTCGCGAAA
GGCTGGAGCCGCGTAGGCGCTGCCATGTACCGCATGGGCCGATATCCTGA
AGCGGTGGCAGCGTATACTGAAGGTCTGGTCCAGGCACCGGGAAACGCGG
ATCTCACTCGGGCGCTCGCCGAAGCTAGCCATGCCGCCCAGGAGATGCGG
GGCCCTCCTCGCAGAGACCTCTTGCCCCATCTGCGAGCTTTCTTCCTCAA
GGATCGGCTGGCCACTcgacttttccttccccgcgtcTTCATGCTACTCA
ACGGCCTTATCTATCTAATCCCTTTTCTGCCTGCAGGCTGGGGTCTGGCC
AGCTACCGTCGCGTGCTGTACACGGCGGCAGTCCTCCATCTCTACGCTCT
CTACAACGCGCATGGCTTCCCGAAATTTACGATAGACTTCCTCGCGCGAT
GCATGCAAGACGTACACGCGTCCCCCctgttcctctcccttctcctcctc
tccttcaggAGTAAGACGTATCTGCCGGGCGTGGCCGCGCTCCTACTCAC
CGAGGGCATGCAggtcctctgcttcctcaaccagctcctcgctctcgcgC
GACCAGCAGCAGAGAAAGCTCTCTCGGCACGATTCATGGGCCTAGCCATG
CGCTACACCCAAAATCCGCGGTACGGCGCGCTTCCTACTCCCCAGGCGCG
GTGGGCAGCGCTCTTCACGGCTTCTGCCTCCCACGCGGCCGCCTTGGAGA
TCGGAAcgggcctcttcctcggacTCGAGCTCCTCACTCCACGACGGAAC
ATCTTTGGCATCTTTCTCTTCTGGCAGTACCTCCAGATGCGCTACATGCT
GGACCAAAGCGGCGTCGTGAAGGGCCACTTCAAACGGCTCGACGACTTCC
TGCTCAGGCTGACGAGCCATCCCTCATGTCCAGCATTCCTTGGACGGGGG
TACGAGCTTCTTCGCGGATATCTTGGAAGGGCTGTGGCCATCCCAGATCC
ACAGCAAcagcggcggccgccgcaagggggggggatgccgCGTTGCTGTG
TCATGTGA

Synonyms

Publications