rna2038, rna2038 (mRNA) Nannochloropsis gaditana

Overview
Namerna2038
Unique Namerna2038
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1962
Alignment locationCM002458.1:746463..747953 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100177g20.1005.mrna
Orig protein idgnl|cribi|Naga_100177g20.1005
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:746463..747953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g20gene1949Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28648.1cds2030Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2038rna2038-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2038 ID=rna2038|Name=rna2038|organism=Nannochloropsis gaditana|type=mRNA|length=1962bp
ATGCATCTCAGCAAGGCTTGTGACATCTTCTTCCCCGGCCTATCGCTTTG
GGTGGAGTCGCAGGTGGCGGACGCGCAGGGAGAGGAAAAGGAGGGGAGGA
CAGAGGACATGGGGCCACCAGGAGGAGTAGTGGCAGAGCCGAATCCGCCC
TTGGCCATTAGTAACTTGGTTGGTACTTATGAGGGGCATGCCTTTCCTCG
CTCTCCATCCGGTGCCGCGGCGGTTAACGAGGTTGTATCTGCCGCGTGTA
CAGACACCTCTGCGGCAGCTGAAGACGCCGTAGAGGACCTGAACTTGCTG
GGGTTGTTGTGGAGCGACCGCGAGGAGATGGGAAGGGCGCGCCTGTACCT
GCTGGCCGCCAAGGCCGCTTACCGCATGCTCGAGCCTTATTGTCCCTCTT
CTGTAAATGCCGCTGCCACCCTTTCTGGAACCGCGGCACAGTTGAACGGT
AGCGAGGAAGGCCCGATGAAGACCGTCGGCCGCGCGGCACCAGCCGCCCG
CGGGCCTGAGGGCGCCGACAGGCGTAGCTTCCGGCGCCCGATCGACGGCC
ACCACACGCACACACTCTACTACCTGGCCCAGGTCTACGGGGCCTTGAGG
AATGCGGACGCCTCGGCTTCATACTGCTACCAGACCTTGGCCCGCCAGCT
GGAGTGGGAGTTGACGCTGGACGTGTGCGGGTGGGTGGGCAACTGCATGA
GCCTCGTCGACTACCTGCTGGGCGAGCAGGGGGACAAGGAGGCTGCCGCC
TGGTGCTTGGAAGCGTGCGACGTGCTCTTGAGGAGAGAGGAGGAAGCGAA
GGCGCGAGGCGAAGGGCCCGGGACGGCAAGGGAAGAGGCTCGGGCGCTCT
CAGTCGCCGGCGTCCACAGAAAGTGGGCCGTTTTGTACGCCTCCATCCTG
GAAGAGGCTGCTGCGCTGGCCTTGGGGGAGCTCGACAGAAATGAGGCCCG
AAGGCCCGCGGCTTTCCTGGTCGGCTTCCCGCGTCTGTTCCCCTCCTTAT
CGAGCCCGTCCTCCCCCCTCGCCCCCGACGCCTCCCCCGCAGGAGCCACC
TGCGCCCAACCCTCCCGCTTGCCTCTCCCTCCCTCCATCACGTCATTCGC
CCAGGCACGACCCGTCTTCCTCCAAGCGCAGAAGCACCTGGCAGCCGCCC
TGAGCTACTTCGTCCTGGATGGGCACGTGACGGAGCACGTGCACCTGTTG
CGGGAGCAGAGCAAAGCCTACCGGGACCTGGCCGTCTTCGAATCGGACGA
CAAGCGTCGACAAGCCATGTTCCTTCGCCGCGCCGGGCTGTTGCAGCCTC
TGCTGGATGACTTGAATCCTCGGGCGTACGCGGGGCTGCTGAAGGTGGTG
TCTTTCGAGCTGGGGGAGGTGTACCTGACGCTTTTGGAGACGAAGGCCGC
GAGGGTGGAAGAGAAGCTGTCGCAGGCAGGACGGCGAGCGCGTGGCGATG
AGGACGACAATAAGGCATTGGAGGCGTACGAACCGAGCAAGGCCGAGGCG
GAGAAATGTGACACATACTGTCGGCTGGCGATCGCCGCCTTCGAGCACTT
CGTCAGGCTGTACCACAAGCAATCTCCGCCGCCAGACGTCCGAGAAACCT
CTTCTCCCGGTCTCAAGGCATCTGGTGTCGAAAACGTAGCCTGGGATCTG
CCCAGCAAAGAGGATTTTAAGCCAGTCTTTCGCGCGCACTTTCATTTGGC
GCGGCTGTACGGTCGCATGCACGTGTTTGGGGGCCAGGGAGAGGAGGCCC
ACGAGGGTCGTGTGGCAGGAATGAAGAAGAGTCTGGCTACCTACGAGTGG
TTGCGCGGCTTTGCCCGGGAGCATATCTGTAGGCTGTACGGAGCAAGTGC
CGGGCCCTGTGAGAGGCATTTTGCCGAAGAATTGAAGATTTGCGACGACA
TGTCTGCGATGCTGCCCGAGAAGATCGCGCGGGAGCACTTCAAATACAAA
GCCTCCTCGTGA
back to top

protein sequence of rna2038

>rna2038-protein ID=rna2038-protein|Name=rna2038|organism=Nannochloropsis gaditana|type=polypeptide|length=496bp
MYAKQPTVCQLRCPFTPSDFIALSDFPEIGIDGSGALWISKLLESASRLA
APSSPGIGAKKPSQASRADDDVYDRNSFCELMDLRSSFNAVPRARFSAAR
SASNMYEPLGTAAQNPFLNRSALKLANIDAIIPLKPVLVSQGMDVEDSLP
TFTFLDLCGGPGGFSEYLLRRQDLVKEVHGWGMTLCDCKCGWDRGKLGEW
IVDENKKNARTFESTPNEDHQSGIFPSKRRKCMSALASLQTRALHLVYGS
DGSGDLCQPDNVQFLADSMAVRVDVVVADGGFAGARGRFDQEAAMLPLLI
SEASAMVQTLQPKGCFVCKFFDMTLPGTVQLVALLALLFERVTVVKPVMS
RPASSERYFLGQGFRGFDEEESKEGAVSTRQARVLLNEMLALATAGQTCG
TPVDGGEGGGQALITSMRQALARGSPFVAWLRAVNDKLMRSQVEACYAIH
ARLEMEEGEGEGERSAHEEEENAIDVDSYRQIWGLDKLHNSHREEQ
back to top

mRNA from alignment at CM002458.1:746463..747953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2038 ID=rna2038|Name=rna2038|organism=Nannochloropsis gaditana|type=mRNA|length=1491bp|location=Sequence derived from alignment at CM002458.1:746463..747953- (Nannochloropsis gaditana)
ATGTATGCGAAGCAACCCACAGTGTGTCAACTTCGTTGCCCATTCACGCC
TTCTGACTTTATTGCCTTATCGGACTTTCCGGAAATTGGAATAGACGGGT
CCGGGGCGCTTTGGATATCGAAGCTGTTGGAAAGTGCAAGTCGCCTGGCA
GCCCCTTCATCACCAGGAATAGGCGCTAAAAAACCTTCGCAAGCCAGCAG
AGCGGACGATGACGTTTATGATCGGAATTCGTTTTGTGAGTTGATGGACT
TACGTTCCTCCTTCAACGCAGTGCCCCGTGCTCGCTTCTCGGCCGCCCGG
TCGGCATCTAACATGTACGAGCCATTGGGCACTGCAGCACAGAACCCCTT
CCTCAACCGTTCCGCTCTCAAACTTGCCAACATAGATGCAATAATTCCTT
TAAAACCAGTCTTGGTCTCACAAGGCATGGATGTCGAAGACTCTCTCCCT
ACCTTCACATTTCTAGACCTTTGCGGAGGGCCCGGAGGCTTCTCAGAGTA
CTTGTTGAGACGACAAGATCTTGTCAAAGAGGTACATGGGTGGGGAATGA
CGTTGTGCGATTGTAAGTGTGGATGGGACAGGGGAAAATTGGGTGAATGG
ATTGTGGACGAAAACAAGAAAAATGCGAGAACATTCGAGAGCACCCCCAA
TGAGGACCATCAGTCGGGCATTTTCCCTTCGAAAAGACGCAAGTGCATGT
CAGCTTTGGCATCACTGCAGACAAGAGCCCTTCACTTAGTCTATGGGTCT
GATGGAAGTGGTGACCTGTGCCAGCCCGACAATGTTCAGTTCCTTGCCGA
CTCGATGGCGGTGCGAGTAGACGTTGTTGTGGCGGACGGAGGCTTTGCCG
GGGCTAGGGGACGGTTTGATCAGGAGGCTGCCATGCTGCCCCTCTTGATT
AGCGAGGCATCCGCGATGGTCCAAACGCTTCAACCGAAAGGATGCTTTGT
TTGCAAGTTTTTTGACATGACGTTGCCAGGGACGGTTCAGCTCGTCGCTC
TTCTGGCTTTGCTCTTTGAGCGAGTTACCGTCGTCAAGCCAGTAATGAGC
CGGCCAGCAAGCTCCGAGAGGTATTTCCTAGGGCAGGGGTTCCGCGGTTT
CGACGAGGAGGAAAGCAAGGAGGGCGCGGTTAGCACGCGCCAAGCAAGGG
TCCTCCTGAACGAAATGCTCGCCCTGGCAACAGCTGGACAGACCTGCGGG
ACACCGGTCGACGGGGGAGAGGGGGGGGGGCAGGCGTTGATAACATCGAT
GCGACAAGCCCTGGCCCGAGGCTCGCCATTTGTTGCTTGGCTGCGTGCAG
TGAACGACAAGCTCATGCGCTCGCAGGTGGAAGCGTGCTATGCCATCCAT
GCAAGGTTGGAAATGGAGGAGGGCGAAGGAGAGGGCGAGAGAAGCGCACA
TGAAGAGGAAGAGAATGCGATCGATGTAGACAGCTACCGACAAATATGGG
GTCTAGACAAGCTGCACAATTCACACAGGGAAGAACAATGA
back to top

Coding sequence (CDS) from alignment at CM002458.1:746463..747953-

>rna2038 ID=rna2038|Name=rna2038|organism=Nannochloropsis gaditana|type=CDS|length=1491bp|location=Sequence derived from alignment at CM002458.1:746463..747953- (Nannochloropsis gaditana)
ATGTATGCGAAGCAACCCACAGTGTGTCAACTTCGTTGCCCATTCACGCC
TTCTGACTTTATTGCCTTATCGGACTTTCCGGAAATTGGAATAGACGGGT
CCGGGGCGCTTTGGATATCGAAGCTGTTGGAAAGTGCAAGTCGCCTGGCA
GCCCCTTCATCACCAGGAATAGGCGCTAAAAAACCTTCGCAAGCCAGCAG
AGCGGACGATGACGTTTATGATCGGAATTCGTTTTGTGAGTTGATGGACT
TACGTTCCTCCTTCAACGCAGTGCCCCGTGCTCGCTTCTCGGCCGCCCGG
TCGGCATCTAACATGTACGAGCCATTGGGCACTGCAGCACAGAACCCCTT
CCTCAACCGTTCCGCTCTCAAACTTGCCAACATAGATGCAATAATTCCTT
TAAAACCAGTCTTGGTCTCACAAGGCATGGATGTCGAAGACTCTCTCCCT
ACCTTCACATTTCTAGACCTTTGCGGAGGGCCCGGAGGCTTCTCAGAGTA
CTTGTTGAGACGACAAGATCTTGTCAAAGAGGTACATGGGTGGGGAATGA
CGTTGTGCGATTGTAAGTGTGGATGGGACAGGGGAAAATTGGGTGAATGG
ATTGTGGACGAAAACAAGAAAAATGCGAGAACATTCGAGAGCACCCCCAA
TGAGGACCATCAGTCGGGCATTTTCCCTTCGAAAAGACGCAAGTGCATGT
CAGCTTTGGCATCACTGCAGACAAGAGCCCTTCACTTAGTCTATGGGTCT
GATGGAAGTGGTGACCTGTGCCAGCCCGACAATGTTCAGTTCCTTGCCGA
CTCGATGGCGGTGCGAGTAGACGTTGTTGTGGCGGACGGAGGCTTTGCCG
GGGCTAGGGGACGGTTTGATCAGGAGGCTGCCATGCTGCCCCTCTTGATT
AGCGAGGCATCCGCGATGGTCCAAACGCTTCAACCGAAAGGATGCTTTGT
TTGCAAGTTTTTTGACATGACGTTGCCAGGGACGGTTCAGCTCGTCGCTC
TTCTGGCTTTGCTCTTTGAGCGAGTTACCGTCGTCAAGCCAGTAATGAGC
CGGCCAGCAAGCTCCGAGAGGTATTTCCTAGGGCAGGGGTTCCGCGGTTT
CGACGAGGAGGAAAGCAAGGAGGGCGCGGTTAGCACGCGCCAAGCAAGGG
TCCTCCTGAACGAAATGCTCGCCCTGGCAACAGCTGGACAGACCTGCGGG
ACACCGGTCGACGGGGGAGAGGGGGGGGGGCAGGCGTTGATAACATCGAT
GCGACAAGCCCTGGCCCGAGGCTCGCCATTTGTTGCTTGGCTGCGTGCAG
TGAACGACAAGCTCATGCGCTCGCAGGTGGAAGCGTGCTATGCCATCCAT
GCAAGGTTGGAAATGGAGGAGGGCGAAGGAGAGGGCGAGAGAAGCGCACA
TGAAGAGGAAGAGAATGCGATCGATGTAGACAGCTACCGACAAATATGGG
GTCTAGACAAGCTGCACAATTCACACAGGGAAGAACAATGA
back to top
Synonyms
Publications