rna2037, rna2037 (mRNA) Nannochloropsis gaditana

Overview
Namerna2037
Unique Namerna2037
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length354
Alignment locationCM002458.1:744426..746387 +

Link to JBrowse

Properties
Property NameValue
Productkif1-binding protein
Orig transcript idgnl|cribi|Naga_100177g19.1010.mrna
Orig protein idgnl|cribi|Naga_100177g19.1010
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:744426..746387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g19gene1948Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2037rna2037-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28653.1cds2029Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2037 ID=rna2037|Name=rna2037|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
ATGCGATACATATTAAAAGGCAGAGGTCCTCTTCAATTTAGAACATTGCA
TGTTGCACATCAAACTAGATATCTTGAGGGCAGTGGTCCACGTGATTTTA
TATCCTGCACCTGGGTCCACGTGGCCCTTTTTGGGCCTCCTTGGTCGCCC
CTCGCCGAGCCGAAGACAGCGAGCAGCAAGCGTAGAGTCCAAGAGGACCT
GTCGCCATGCCCCATTACACAGACTTTTTTGCAAAAATTGATGCTTTACT
CACTCGCGAGGACGACACGAAGACGCCCTACGCATCAAAGTATGAGGCCC
GCAACCTTTTGCATAAATGTTTGGATGAGAAATCTGCAGAAATGGACCCC
TTAA
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protein sequence of rna2037

>rna2037-protein ID=rna2037-protein|Name=rna2037|organism=Nannochloropsis gaditana|type=polypeptide|length=653bp
MHLSKACDIFFPGLSLWVESQVADAQGEEKEGRTEDMGPPGGVVAEPNPP
LAISNLVGTYEGHAFPRSPSGAAAVNEVVSAACTDTSAAAEDAVEDLNLL
GLLWSDREEMGRARLYLLAAKAAYRMLEPYCPSSVNAAATLSGTAAQLNG
SEEGPMKTVGRAAPAARGPEGADRRSFRRPIDGHHTHTLYYLAQVYGALR
NADASASYCYQTLARQLEWELTLDVCGWVGNCMSLVDYLLGEQGDKEAAA
WCLEACDVLLRREEEAKARGEGPGTAREEARALSVAGVHRKWAVLYASIL
EEAAALALGELDRNEARRPAAFLVGFPRLFPSLSSPSSPLAPDASPAGAT
CAQPSRLPLPPSITSFAQARPVFLQAQKHLAAALSYFVLDGHVTEHVHLL
REQSKAYRDLAVFESDDKRRQAMFLRRAGLLQPLLDDLNPRAYAGLLKVV
SFELGEVYLTLLETKAARVEEKLSQAGRRARGDEDDNKALEAYEPSKAEA
EKCDTYCRLAIAAFEHFVRLYHKQSPPPDVRETSSPGLKASGVENVAWDL
PSKEDFKPVFRAHFHLARLYGRMHVFGGQGEEAHEGRVAGMKKSLATYEW
LRGFAREHICRLYGASAGPCERHFAEELKICDDMSAMLPEKIAREHFKYK
ASS
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mRNA from alignment at CM002458.1:744426..746387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2037 ID=rna2037|Name=rna2037|organism=Nannochloropsis gaditana|type=mRNA|length=1962bp|location=Sequence derived from alignment at CM002458.1:744426..746387+ (Nannochloropsis gaditana)
ATGCATCTCAGCAAGGCTTGTgacatcttcttccccggcCTATCGCTTTG
GGTGGAGTCGCAGGTGGCGGacgcgcagggagaggaaaaggaggggagga
cagaggaCATGGGGCCACCAGGAGGAGTAGTGGCAGAGCCGAATCCGCCC
TTGGCCATTAGTAACTTGGTTGGTACTTATGAGGGGCATGcctttcctcg
ctctccatCCGGTGCCGCGGCGGTTAACGAGGTTGTATCTGCCGCGTGTA
CAGACACCTCTGCGGCAGCTGAAGACGCCGTAGAGGACCTGAACTTGCTG
GGGTTGTTGTGGAGCGACCgcgaggagatgggaagggcgCGCCTGTACCT
GctggccgccaaggccgctTACCGCATGCTCGAGCCTTATTGTCCCTCTT
CTGTAAATGCCGCTGCCACCCTTTCTGGAACCGCGGCACAGTTGAACGGT
AGCGAGGAAGGCCCGATGAAGACCGTCGGCCGCGCGGCACCAGCCGCCCG
CGGGCCTGAGGGCGCCGACAGGCGTAGCTTCCGGCGCCCGATCGACGGCC
ACCACACGCACACACTCTACTACCTGGCCCAGGTCTACGGGGCCTTGAGG
AATGCGGACGCCTCGGCTTCATACTGCTACCAGACCTTGGCCCGCCAGCT
GGAGTGGGAGTTGACGCTGGACGTGTGCGGGTGGGTGGGCAACTGCATGA
GCCTCGTCGACTACCTGCTGGGCGAgcagggggacaaggaggctgCCGCC
TGGTGCTTGGAAGCGTGCGACGTGCTcttgaggagagaggaggaagcgaa
ggcgCGAGGCGAAGGGCCCGGGAcggcaagggaagaggctCGGGCGCTCT
CAGTCGCCGGCGTCCACAGAAAGTGGGCCGTTTTGTACGCCTCCATCCTG
GAAGAGGCTGCTGCGCTGGCCTTGGGGGAGCTCGACAGAAATGAGGCCCG
AAGGCCCGCGGCTTTCCTGGTCGGCTTCCCGCGTCTGTTCCCCTCCTTAt
cgagcccgtcctcccccctcgcccccgacgcctcccccgcAGGAGCCACC
TGCGCCCAACCCTCCCgcttgcctctccctccctccatcacgTCATTCGC
CCAGGCACgacccgtcttcctccaagcGCAGAAGCACCTGGCAGCCGCCC
TGAGCTACTTCGTCCTGGATGGGCACGTGACGGAGCACGTGCACCTGTTG
CGGGAGCAGAGCAAAGCCTACCGGGACCTGGCCGTCTTCGAATCGGACGA
CAAGCGTCGACAAGCCATGTTCCTTCGCCGCGCCGGGCTGTTGCAGCCTC
TGCTGGATGACTTGAATCCTCGGGCGTACGCGGGGCTGCTGAAGGTGGTG
TCTTTCGAGCTGGGGGAGGTGTACCTGACGCTTTTGGAGACGAAGGCCgc
gagggtggaagagaagcTGTCGCAGGCAGGACGGCGAGCGCGTGGCGATG
AGGACGACAATAAGGCATTGGAGGCGTACGAACCGAGCAAggccgaggcg
gagaaatGTGACACATACTGTCGGCTGGCGATCGCCGCCTTCGAGCACTT
CGTCAGGCTGTACCACAAGCAATCTCCGCCGCCAGACGTCCGAGAAACCT
CTTCTCCCGGTCTCAAGGCATCTGGTGTCGAAAACGTAGCCTGGGATCTG
CCCAGCAAAGAGGATTTTAAGCCAGTCTTTCGCGCGCACTTTCATTTGGC
GCGGCTGTACGGTCGCATGCACGTGTttgggggccagggagaggaggccc
acGAGGGTCGTGTGGCAGGAATGAAGAAGAGTCTGGCTACCTACGAGTGG
TTGCGCGGCTTTGCCCGGGAGCATATCTGTAGGCTGTACGGAGCAAGTGC
CGGGCCCTGTGAGAGGCATTTTGCCGAAGAATTGAAGATTTGCGACGACA
TGTCTGCGATGCTGCCCGAGAAGATCGCGCGGGAGCACTTCAAATACAAA
GCCTCCTCGTGA
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Coding sequence (CDS) from alignment at CM002458.1:744426..746387+

>rna2037 ID=rna2037|Name=rna2037|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002458.1:744426..746387+ (Nannochloropsis gaditana)
ATGCATCTCAGCAAGGCTTGTgacatcttcttccccggcCTATCGCTTTG
GGTGGAGTCGCAGGTGGCGGacgcgcagggagaggaaaaggaggggagga
cagaggaCATGGGGCCACCAGGAGGAGTAGTGGCAGAGCCGAATCCGCCC
TTGGCCATTAGTAACTTGGTTGGTACTTATGAGGGGCATGcctttcctcg
ctctccatCCGGTGCCGCGGCGGTTAACGAGGTTGTATCTGCCGCGTGTA
CAGACACCTCTGCGGCAGCTGAAGACGCCGTAGAGGACCTGAACTTGCTG
GGGTTGTTGTGGAGCGACCgcgaggagatgggaagggcgCGCCTGTACCT
GctggccgccaaggccgctTACCGCATGCTCGAGCCTTATTGTCCCTCTT
CTGTAAATGCCGCTGCCACCCTTTCTGGAACCGCGGCACAGTTGAACGGT
AGCGAGGAAGGCCCGATGAAGACCGTCGGCCGCGCGGCACCAGCCGCCCG
CGGGCCTGAGGGCGCCGACAGGCGTAGCTTCCGGCGCCCGATCGACGGCC
ACCACACGCACACACTCTACTACCTGGCCCAGGTCTACGGGGCCTTGAGG
AATGCGGACGCCTCGGCTTCATACTGCTACCAGACCTTGGCCCGCCAGCT
GGAGTGGGAGTTGACGCTGGACGTGTGCGGGTGGGTGGGCAACTGCATGA
GCCTCGTCGACTACCTGCTGGGCGAgcagggggacaaggaggctgCCGCC
TGGTGCTTGGAAGCGTGCGACGTGCTcttgaggagagaggaggaagcgaa
ggcgCGAGGCGAAGGGCCCGGGAcggcaagggaagaggctCGGGCGCTCT
CAGTCGCCGGCGTCCACAGAAAGTGGGCCGTTTTGTACGCCTCCATCCTG
GAAGAGGCTGCTGCGCTGGCCTTGGGGGAGCTCGACAGAAATGAGGCCCG
AAGGCCCGCGGCTTTCCTGGTCGGCTTCCCGCGTCTGTTCCCCTCCTTAt
cgagcccgtcctcccccctcgcccccgacgcctcccccgcAGGAGCCACC
TGCGCCCAACCCTCCCgcttgcctctccctccctccatcacgTCATTCGC
CCAGGCACgacccgtcttcctccaagcGCAGAAGCACCTGGCAGCCGCCC
TGAGCTACTTCGTCCTGGATGGGCACGTGACGGAGCACGTGCACCTGTTG
CGGGAGCAGAGCAAAGCCTACCGGGACCTGGCCGTCTTCGAATCGGACGA
CAAGCGTCGACAAGCCATGTTCCTTCGCCGCGCCGGGCTGTTGCAGCCTC
TGCTGGATGACTTGAATCCTCGGGCGTACGCGGGGCTGCTGAAGGTGGTG
TCTTTCGAGCTGGGGGAGGTGTACCTGACGCTTTTGGAGACGAAGGCCgc
gagggtggaagagaagcTGTCGCAGGCAGGACGGCGAGCGCGTGGCGATG
AGGACGACAATAAGGCATTGGAGGCGTACGAACCGAGCAAggccgaggcg
gagaaatGTGACACATACTGTCGGCTGGCGATCGCCGCCTTCGAGCACTT
CGTCAGGCTGTACCACAAGCAATCTCCGCCGCCAGACGTCCGAGAAACCT
CTTCTCCCGGTCTCAAGGCATCTGGTGTCGAAAACGTAGCCTGGGATCTG
CCCAGCAAAGAGGATTTTAAGCCAGTCTTTCGCGCGCACTTTCATTTGGC
GCGGCTGTACGGTCGCATGCACGTGTttgggggccagggagaggaggccc
acGAGGGTCGTGTGGCAGGAATGAAGAAGAGTCTGGCTACCTACGAGTGG
TTGCGCGGCTTTGCCCGGGAGCATATCTGTAGGCTGTACGGAGCAAGTGC
CGGGCCCTGTGAGAGGCATTTTGCCGAAGAATTGAAGATTTGCGACGACA
TGTCTGCGATGCTGCCCGAGAAGATCGCGCGGGAGCACTTCAAATACAAA
GCCTCCTCGTGA
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Synonyms
Publications