rna2034, rna2034 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2034
Unique Name	rna2034
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2016
Alignment location	CM002458.1:739509..741344 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100177g15.1006.mrna
Orig protein id	gnl\|cribi\|Naga_100177g15.1006
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:739509..741344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100177g15	gene1945	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2034	rna2034-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28649.1	cds2026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:739509..741344+
coding sequence from alignment at CM002458.1:739509..741344+

mRNA sequence

>rna2034 ID=rna2034|Name=rna2034|organism=Nannochloropsis gaditana|type=mRNA|length=2016bp
ATGGATCAACCTGGATATAACAACAGCCCTCGAGGCTCCATATTGAGCCC
GGGCCTGACTCACCGTGCAAGCAAGACCCCCAGGAGTTCAGGTCTCTGTG
ACGAGACGACGTCGCATTTCCAGTTTAACGAGTTCGGTCTCGATCGGCAA
TCGTCGATCCGGAAAGAGGAAGAAAATCGCTATATAACAGACAAAGAGCA
CAAAATGAAGAGTCCATTTGACACGCTCCGTCACAGTCCCCGCCTGGTAG
CCTTCACCCCGGCCAAACGGTTTTTGCTTGGGGCCTCAGTATCCCTGGTG
CTTATCGGCATCCTCTTCGTGATTGGCTTCTTCGATAACCGAGCTATGTC
TTCTCCCAGCACAAGTACAACGCATCGTCGGTCTGCCGGTGTGCGTCCTG
CGTCTTTGCGAGGCACCGTCGGCGATGTTGGCCCTGCTGCTGGGCCCGCT
GCAGCGGCCTCTCTCGCCTCCACTCTCACCGGAGGGGTGCTCTTCCCTCG
CAGTGAGGATGTGGACCACCACAAACCACGTGTGATGATGATTCCATCCT
TGAAATCGTTTTCTCGCCGTAATGTCCACCATTATGATACACACGACCCG
AATGGCAGGTTGTCGGGAGGAAAGTCCGCCGTGAAGCCGCCGGCGGGAAG
CCGTGAGAAAAAGAGACGGGAATCGGAAGAAGAGGACACAGCAGTGCACG
TGGAAGATGTAGATATCGATGATGACGGAAAGCGGCGTTCGGCTTCCCCC
GACGCGGAGGATATTCTGAACATCGAACACGCTTCGGATAAACTCGCTGT
GGTACTGCCTCACGAGTACGAGACCACGGGAGTCGTCTCTCATTTTCATT
CGATAACTGGCGTAGACAGTAATCACAACTTTGACGTCAATGACTACTTC
GGATCCTCCGTGACGAGCTTGGGCGGCACCCCTGGAACGGGGTTGACCAC
GCTGGCTGTGGGCGCTCCGGGGGCCTTGGAGAACTCTGGAATGATCTACT
TCCTCGACCTGGAGAAGGACGGGAAAGTTAAGAACTACACCTACCTCACC
AACAAAGATAGCTCGCTGGGGGACCATTGGACCTCGAACGTGGCCTTGGG
GTGGACCGTGGAGAACATAGGAGACCTGGACGGGGACGGCGTGGATGACC
TGGCGGTGGGCGCCATTGGCTACCCGGTCGGTAGCTCTCAAGGTGCGGTC
TACATCCTCTTCATGACGCCGGAGCGTGGGATCAAGAGTCATCAGTTTAT
TACGACGGGAGAGGCCGGTTTTGAGCCCTTTTTGAAAGAAAATTCCTGTT
TTGGTTCTTCAATCGCGCGCATTGGTGACCTGGATGGAGATGGCGTGACA
GAACTCGCAGTGGGAGCCATGGGTCTCGGGAAACAACGCGGTGGAATCTA
TATTCTCTACATGAATAAAGACGGGACTGTGAAAAAGAGCACGCAGATCT
CCTCGCTTTACGGATGGGATCACAAACTCAACGTAGAAGACCAGTTCGGG
CACGCTGTGCGGGCTATCGGGGACCTAGACGGGGATGGAATCACGGAATT
GGCTGTAGGCGGGGATGGATTTCCTTCAGGAGAGTTTTATGGCTCTGTGT
GGATCCTATACTTGACCAAGGAGGGGGGTGTGAAGCAATGGCGACGAATC
GATGAATTAGACGGACACCTAGAGCCAGAATCCCTTTTCGGGGGGTCCAT
CGACATGCTTGGAGACCTGGACGGCGATGGCTTTCCAGAACTGATTGTAG
GGGCGCCGGGAGCGAACGGATTCAAGGGGGATGCGTTCATTGTTTCATTG
GGTGCCAATGCCACTGTGAAGCACTACAAATCCCTGGTGGACGAAGTAGG
TGTCCTTTCCGATAGCATCAAGGAAGAGGATGAGTTTGCATGGTCCCTTT
GTAACATTGGAGACATTAACGGAGATGGCGTGCCTGATTTGGCCTTGGGA
GCAGAGACGTCACCTGCGGATAAGAACTTTGGCTCGTTGCACGTAGTGTT
CTTGACTCCCCGATAA

protein sequence of rna2034

>rna2034-protein ID=rna2034-protein|Name=rna2034|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MLHVSLKIGKNASDTGAYSYPDKKRIKTKEAEAGDDDDDDDYHAANSAGA
GHETRGTLEVENVTSHVENHRREEEKWCNAMVEYAMTMSAIREEADPVWY
QHVLRSVLGHGPETDVAAYLIDTDVKRLVFSQFLGARGGTSLLSQELMRK
AFEQCVAKSEASPGDPDDSPALYLNSLFDPRAAIALHRRPGAGQFPSASE
VLVHSLDTDALLSALACLGFGVVSAPSTEWRLQRVDPLHEASLLGHVRAC
PHLSLRLRQSESLYAFPLGAPLLAAPPEPTPPFPASFSFQAFSTHTSGAE
DMEAGFHLSCGDTSLCAVYRDRLWPGSWRLRTSPPVERKGYEGVLLRFLC
QKIVQEEEHEAQERGKDLLVWVSDDASSEGGAIGEADIQNVLCNLGFVRK
GMGVTIYAVSGRPNSLLAGQEPDKLLRTGCFGHWG

mRNA from alignment at CM002458.1:739509..741344+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2034 ID=rna2034|Name=rna2034|organism=Nannochloropsis gaditana|type=mRNA|length=1836bp|location=Sequence derived from alignment at CM002458.1:739509..741344+ (Nannochloropsis gaditana)
ATGTTACATGTATCGCTGAAGATAGGAAAAAATGCTTCAGACACAGGTGC
TTATAGCTAGTTAGTGCGTACTCGCATTTAAAGACGCATACGATCGGAAC
GTCAGTTTAAAGAGCACAAGAAGTTGCACTTATTTCTTGAAAAAGTTAAT
TTACCTCTTGGTGATAGGACTGAGCCCAATTTTCGCGAAGGACAAGCGTT
TtggaggtaggaaggaaaatgTCGTAGGACGAGACTCATCCTTCATGGTT
TATGTTCATGTTTTATGCGCATATATGCCCCTTCACTCGGTCATCCGGAG
TCCCCTTCCGGAACGTACACTCCCGGACTCCCGCCCCTATTACGACACGA
TACGATCTACCTCGCAGTGCGGTCCCACTGCCTTTTTACAGCACAGGGAC
GTTGGAGTACGAATATAGGCATGCCTATCTCCAGTCCAGACAAGAAGCGC
ATAAAGACTAAGGAGGCTGAGGCGggcgatgacgacgatgacgacgatgt
ACGTGTGCCTCAAGGCGGATGTCCGGGGGGGCGTCGATCCGCTAGGCTTG
ACCTTATCACGTGTTGCAGTGGTGCGAAATGAGCCTCTGTTCTGTTTTGA
AAGTGGCGTCACTTTTTAAAAGTAGTTTATCTGCTCAACCCCTCACCGTA
GTACCATGCGGCGAATTCTGCAGGGGCTGGCCATGAGACTCGCGGGACAC
TGGAGGTCGAGAATGTTACAAGCCATGTTGAAAATCAtcgcagagaggag
gaaaagtggtGCAACGCCATGGTGGAATACGCGATGACCATGTCTGCAat
cagggaggaggcggatcCGGTCTGGTATCAGCACGTCCTGCGCAGCGTGC
TCGGTCACGGACCTGAGACGGACGTCGCCGCATATCTGATAGACACAGAC
GTGAAGAGGCTCGTCTTTTCTCAATTCCTGGGTGCGAGAGGTGGAACGTC
ACTGCTCAGCCAGGAGTTGATGCGGAAGGCGTTTGAACAGTGCGTGGCAA
AGTCGGAGGCGAGTCCGGGCGACCCCGACGACTCACCTGCACTCTACCTC
AACAGCCTTTTCGACCCGCGGGCAGCCATTGCCCTCCATCGTAGGCCTGG
TGCGGGGCAGTTTCCATCGGCCTCCGAGGTGTTGGTGCACTCTCTGGACA
CGgatgccctcctttccgcgcTCGCGTGCCTGGGCTTCGGCGTCGTCTCT
GCTCCCAGCACCGAGTGGCGGCTGCAGCGCGTGGACCCCTTGCATGAGGC
CAGCTTGCTCGGCCACGTCCGTGCCTGTCCTCATTTGAGCCTCAGGCTGC
GTCAGAGCGAGAGCCTCTATGCTTTCCCTTTGGGCGCGCCTCTCctggcc
gccccccccgagccaacccctccttttcctgcatcCTTTTCGTTCCAGGC
ATTTTCGACCCATACAAGCGGCGCAGAGGACATGGAAGCCGGGTTTCATC
TCTCCTGCGGGGACACCTCGCTCTGTGCGGTGTACCGAGACAGGCTCTGG
CCGGGGTCCTGGAGACTGAGGACGTCGCCGCCtgtcgagaggaagggcta
CGAGGGCGTGCTGCTGCGCTTTTTGTGCCAGAAGATCgtgcaggaagaag
aacatGAGGCccaagaaagggggaaagatcTATTGGTGTGGGTGAGTGAC
GACGCGAgtagcgagggaggggccatcGGAGAGGCCGACATCCAGAATGT
CTTGTGTAACTTAGGCTTTGTGCGAAAGGGGATGGGAGTGACGATCTATG
CGGTGAGCGGACGACCCAATAGCTTGTTGGCTGGGCAAGAGCCCGATAAA
TTGTTGAGGACCGGGTGCTTTGGGCATTGGGGGTGA

Coding sequence (CDS) from alignment at CM002458.1:739509..741344+

>rna2034 ID=rna2034|Name=rna2034|organism=Nannochloropsis gaditana|type=CDS|length=3924bp|location=Sequence derived from alignment at CM002458.1:739509..741344+ (Nannochloropsis gaditana)
ATGTTACATGTATCGCTGAAGATAGGAAAAAATGCTTCAGACACAGGTGC
TTATAGCTATCCAGACAAGAAGCGCATAAAGACTAAGGAGGCTGAGGCGg
gcgatgacgacgatgacgacgatTACCATGCGGCGAATTCTGCAGGGGCT
GGCCATGAGACTCGCGGGACACTGGAGGTCGAGAATGTTACAAGCCATGT
TGAAAATCAtcgcagagaggaggaaaagtggtGCAACGCCATGGTGGAAT
ACGCGATGACCATGTCTGCAatcagggaggaggcggatcCGGTCTGGTAT
CAGCACGTCCTGCGCAGCGTGCTCGGTCACGGACCTGAGACGGACGTCGC
CGCATATCTGATAGACACAGACGTGAAGAGGCTCGTCTTTTCTCAATTCC
TGGGTGCGAGAGGTGGAACGTCACTGCTCAGCCAGGAGTTGATGCGGAAG
GCGTTTGAACAGTGCGTGGCAAAGTCGGAGGCGAGTCCGGGCGACCCCGA
CGACTCACCTGCACTCTACCTCAACAGCCTTTTCGACCCGCGGGCAGCCA
TTGCCCTCCATCGTAGGCCTGGTGCGGGGCAGTTTCCATCGGCCTCCGAG
GTGTTGGTGCACTCTCTGGACACGgatgccctcctttccgcgcTCGCGTG
CCTGGGCTTCGGCGTCGTCTCTGCTCCCAGCACCGAGTGGCGGCTGCAGC
GCGTGGACCCCTTGCATGAGGCCAGCTTGCTCGGCCACGTCCGTGCCTGT
CCTCATTTGAGCCTCAGGCTGCGTCAGAGCGAGAGCCTCTATGCTTTCCC
TTTGGGCGCGCCTCTCctggccgccccccccgagccaacccctccttttc
ctgcatcCTTTTCGTTCCAGGCATTTTCGACCCATACAAGCGGCGCAGAG
GACATGGAAGCCGGGTTTCATCTCTCCTGCGGGGACACCTCGCTCTGTGC
GGTGTACCGAGACAGGCTCTGGCCGGGGTCCTGGAGACTGAGGACGTCGC
CGCCtgtcgagaggaagggctaCGAGGGCGTGCTGCTGCGCTTTTTGTGC
CAGAAGATCgtgcaggaagaagaacatGAGGCccaagaaagggggaaaga
tcTATTGGTGTGGGTGAGTGACGACGCGAgtagcgagggaggggccatcG
GAGAGGCCGACATCCAGAATGTCTTGTGTAACTTAGGCTTTGTGCGAAAG
GGGATGGGAGTGACGATCTATGCGGTGAGCGGACGACCCAATAGCTTGTT
GGCTGGGCAAGAGCCCGATAAATTGTTGAGGACCGGGTGCTTTGGGCATT
GGGGGTGAATGTTACATGTATCGCTGAAGATAGGAAAAAATGCTTCAGAC
ACAGGTGCTTATAGCTATCCAGACAAGAAGCGCATAAAGACTAAGGAGGC
TGAGGCGggcgatgacgacgatgacgacgatTACCATGCGGCGAATTCTG
CAGGGGCTGGCCATGAGACTCGCGGGACACTGGAGGTCGAGAATGTTACA
AGCCATGTTGAAAATCAtcgcagagaggaggaaaagtggtGCAACGCCAT
GGTGGAATACGCGATGACCATGTCTGCAatcagggaggaggcggatcCGG
TCTGGTATCAGCACGTCCTGCGCAGCGTGCTCGGTCACGGACCTGAGACG
GACGTCGCCGCATATCTGATAGACACAGACGTGAAGAGGCTCGTCTTTTC
TCAATTCCTGGGTGCGAGAGGTGGAACGTCACTGCTCAGCCAGGAGTTGA
TGCGGAAGGCGTTTGAACAGTGCGTGGCAAAGTCGGAGGCGAGTCCGGGC
GACCCCGACGACTCACCTGCACTCTACCTCAACAGCCTTTTCGACCCGCG
GGCAGCCATTGCCCTCCATCGTAGGCCTGGTGCGGGGCAGTTTCCATCGG
CCTCCGAGGTGTTGGTGCACTCTCTGGACACGgatgccctcctttccgcg
cTCGCGTGCCTGGGCTTCGGCGTCGTCTCTGCTCCCAGCACCGAGTGGCG
GCTGCAGCGCGTGGACCCCTTGCATGAGGCCAGCTTGCTCGGCCACGTCC
GTGCCTGTCCTCATTTGAGCCTCAGGCTGCGTCAGAGCGAGAGCCTCTAT
GCTTTCCCTTTGGGCGCGCCTCTCctggccgccccccccgagccaacccc
tccttttcctgcatcCTTTTCGTTCCAGGCATTTTCGACCCATACAAGCG
GCGCAGAGGACATGGAAGCCGGGTTTCATCTCTCCTGCGGGGACACCTCG
CTCTGTGCGGTGTACCGAGACAGGCTCTGGCCGGGGTCCTGGAGACTGAG
GACGTCGCCGCCtgtcgagaggaagggctaCGAGGGCGTGCTGCTGCGCT
TTTTGTGCCAGAAGATCgtgcaggaagaagaacatGAGGCccaagaaagg
gggaaagatcTATTGGTGTGGGTGAGTGACGACGCGAgtagcgagggagg
ggccatcGGAGAGGCCGACATCCAGAATGTCTTGTGTAACTTAGGCTTTG
TGCGAAAGGGGATGGGAGTGACGATCTATGCGGTGAGCGGACGACCCAAT
AGCTTGTTGGCTGGGCAAGAGCCCGATAAATTGTTGAGGACCGGGTGCTT
TGGGCATTGGGGGTGAATGTTACATGTATCGCTGAAGATAGGAAAAAATG
CTTCAGACACAGGTGCTTATAGCTATCCAGACAAGAAGCGCATAAAGACT
AAGGAGGCTGAGGCGggcgatgacgacgatgacgacgatTACCATGCGGC
GAATTCTGCAGGGGCTGGCCATGAGACTCGCGGGACACTGGAGGTCGAGA
ATGTTACAAGCCATGTTGAAAATCAtcgcagagaggaggaaaagtggtGC
AACGCCATGGTGGAATACGCGATGACCATGTCTGCAatcagggaggaggc
ggatcCGGTCTGGTATCAGCACGTCCTGCGCAGCGTGCTCGGTCACGGAC
CTGAGACGGACGTCGCCGCATATCTGATAGACACAGACGTGAAGAGGCTC
GTCTTTTCTCAATTCCTGGGTGCGAGAGGTGGAACGTCACTGCTCAGCCA
GGAGTTGATGCGGAAGGCGTTTGAACAGTGCGTGGCAAAGTCGGAGGCGA
GTCCGGGCGACCCCGACGACTCACCTGCACTCTACCTCAACAGCCTTTTC
GACCCGCGGGCAGCCATTGCCCTCCATCGTAGGCCTGGTGCGGGGCAGTT
TCCATCGGCCTCCGAGGTGTTGGTGCACTCTCTGGACACGgatgccctcc
tttccgcgcTCGCGTGCCTGGGCTTCGGCGTCGTCTCTGCTCCCAGCACC
GAGTGGCGGCTGCAGCGCGTGGACCCCTTGCATGAGGCCAGCTTGCTCGG
CCACGTCCGTGCCTGTCCTCATTTGAGCCTCAGGCTGCGTCAGAGCGAGA
GCCTCTATGCTTTCCCTTTGGGCGCGCCTCTCctggccgccccccccgag
ccaacccctccttttcctgcatcCTTTTCGTTCCAGGCATTTTCGACCCA
TACAAGCGGCGCAGAGGACATGGAAGCCGGGTTTCATCTCTCCTGCGGGG
ACACCTCGCTCTGTGCGGTGTACCGAGACAGGCTCTGGCCGGGGTCCTGG
AGACTGAGGACGTCGCCGCCtgtcgagaggaagggctaCGAGGGCGTGCT
GCTGCGCTTTTTGTGCCAGAAGATCgtgcaggaagaagaacatGAGGCcc
aagaaagggggaaagatcTATTGGTGTGGGTGAGTGACGACGCGAgtagc
gagggaggggccatcGGAGAGGCCGACATCCAGAATGTCTTGTGTAACTT
AGGCTTTGTGCGAAAGGGGATGGGAGTGACGATCTATGCGGTGAGCGGAC
GACCCAATAGCTTGTTGGCTGGGCAAGAGCCCGATAAATTGTTGAGGACC
GGGTGCTTTGGGCATTGGGGGTGA

Synonyms

Publications