rna2033, rna2033 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2033
Unique Name	rna2033
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1737
Alignment location	CM002458.1:737292..739476 +

Link to JBrowse

Properties


Property Name	Value
Product	fg-gap repeat domain protein
Orig transcript id	gnl\|cribi\|Naga_100177g14.1003.mrna
Orig protein id	gnl\|cribi\|Naga_100177g14.1003
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:737292..739476 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100177g14	gene1944	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2033	rna2033-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28646.1	cds2025	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:737292..739476+
coding sequence from alignment at CM002458.1:737292..739476+

mRNA sequence

>rna2033 ID=rna2033|Name=rna2033|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp
GTCCTCCGTGCCTTACGAATGTATCGTATATGTCCTTTAGCGCTAATTGT
AATTCTCTGATTTCTTTTCTTACCAAGGACAGCTACATCTCTACACGAAG
GATGATGCAACGTAGCAGAACTCTTATCCTGTCGTTGGCAGCTCTGCTGG
GTGGGAGTGTTTTAGTTGACGCTGCCCCCAAAATACAGTCATTGTCGTGC
TCTCCTGGAATTGGGGACGCACGCAACGCAGATGTAATCGTGACCTGTGC
CCTGCGCGTTGTAGATGCAGACAGTGAGATCGACTTTGCCTACACACGCC
TGGTCTCCCCCTCTGGCAAATTCTCTCTGCCCTTGCTTTTCGACGGAGGA
AAGTCTTTTGGGCTGACCTCATATACCGGTGCAAATTTGGCAGCCAGTGC
CACAATCCCTCGCCATGCAGAAGCCGGATACTGGCAGCTCGATTTTAGCG
GTGTGGATGGCTTGCAAGTGGTAAACAAGCAGGGTGCCTCCGTCATGATC
ACCTCCAAAGAGGCACGGGACCTTGGGCTCTCTCGTTTCGTGAAGATCTA
TTCCCCTGACGACAAGACCCCTCCTTACATCAAGGATGTCGTCTGCACCA
CGCCTGTAGATGTCAACATCACCACTACAAACACGGTATACGTAAAGTGC
GACTTTACTGTTATAGACACCGGTTCTGGACCCGCAACAGTCCGTGCCAG
CTTTGTCAGCCCTGAGGGTGACGCACTTCTTCATATGACGGCTGGCATCA
TAAAGGACGTGGTCTCTAGCAATCCCAGCACTGGAGAGGTGGTACTCTCT
GCCTCCGTTCCCGTATATACCGGCATGCCGTCTGGAAATTGGACGATGGT
CACGGCCATGCCGCTGGCTCCCAGCGCCGAGGACCGGAACGGGAATGAGT
TCTATTACGAGGGAGTCGACACTTCCCTTATCTGGACGCGCCCTACCTTC
GAGGTCTTCTCCCAACCGGACACGACCCCGCCTGTAGTACAGAAATTTGG
GTGCTCTGCAACGCAAGTAATTGTCCCCTTCGGGGGCGAGGACACTTACT
CATGCCAGCTCGTCGTGCAAGACGATCTCTCTGGCTTTGCTTACGGTGAG
CTTGTATTCGAGAACCCGGATCGCAACAGTACCGCTACGCTCCGTTTCGA
TGCAAATACACGTCAAGTACAATTTGCTCGCGGAGGCATCTTCGCACCAA
CTTTGAGTTTTGATCCGACAGCGCCAGGCGGCATGTGGACAGTCAGCAAG
GAGGGCTTACTCCTGCGGGACCTAGCAGGCAACTTCATCAGTTATAATCC
AAAAGAGTTGAACGATCGATCCTACCCTACATTTTTGCTTGTATCCAAGA
CCGACGCGCCCCCTGCAAAGGATAGTAAGAGCCCAGCCTCGTCCCTGAAG
GCCTCGTATTCTATCATTTTGGCATCTCTTCTTGGACTCTTCATTCTCCA
AAGCCGGTAAATATGTAAGGAGATATTGAAAGCAAATACACTTATCATTC
AGGAAAGTATGAGCGATGTGCGCCTCTGGAAAGGGCGGCAACGTCAGATT
CGAGGAGGGTGTGTGTGCAGGAAAAAGTAAGGGCTGGAAATTACACCGTG
CACCATAAATGACATTTACTGGGTCCTTTGCGTGAATCTAGTAAGGAATG
TGACAAAAGTGGTTTGCGCTGTGGCTCTTGACTTCAGGAAAAGAAGAAGA
AACAACAAAGGAAATGGAAGCATTTATGATTCTCACC

protein sequence of rna2033

>rna2033-protein ID=rna2033-protein|Name=rna2033|organism=Nannochloropsis gaditana|type=polypeptide|length=671bp
MDQPGYNNSPRGSILSPGLTHRASKTPRSSGLCDETTSHFQFNEFGLDRQ
SSIRKEEENRYITDKEHKMKSPFDTLRHSPRLVAFTPAKRFLLGASVSLV
LIGILFVIGFFDNRAMSSPSTSTTHRRSAGVRPASLRGTVGDVGPAAGPA
AAASLASTLTGGVLFPRSEDVDHHKPRVMMIPSLKSFSRRNVHHYDTHDP
NGRLSGGKSAVKPPAGSREKKRRESEEEDTAVHVEDVDIDDDGKRRSASP
DAEDILNIEHASDKLAVVLPHEYETTGVVSHFHSITGVDSNHNFDVNDYF
GSSVTSLGGTPGTGLTTLAVGAPGALENSGMIYFLDLEKDGKVKNYTYLT
NKDSSLGDHWTSNVALGWTVENIGDLDGDGVDDLAVGAIGYPVGSSQGAV
YILFMTPERGIKSHQFITTGEAGFEPFLKENSCFGSSIARIGDLDGDGVT
ELAVGAMGLGKQRGGIYILYMNKDGTVKKSTQISSLYGWDHKLNVEDQFG
HAVRAIGDLDGDGITELAVGGDGFPSGEFYGSVWILYLTKEGGVKQWRRI
DELDGHLEPESLFGGSIDMLGDLDGDGFPELIVGAPGANGFKGDAFIVSL
GANATVKHYKSLVDEVGVLSDSIKEEDEFAWSLCNIGDINGDGVPDLALG
AETSPADKNFGSLHVVFLTPR

mRNA from alignment at CM002458.1:737292..739476+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2033 ID=rna2033|Name=rna2033|organism=Nannochloropsis gaditana|type=mRNA|length=2185bp|location=Sequence derived from alignment at CM002458.1:737292..739476+ (Nannochloropsis gaditana)
ATGGATCAACCTGGATATAACAACAGCCCTCGAGGCTCCATATTGAGCCC
GGGCCTGACTCACCGTGCAAGCAAGACCCCCAGGAGTTCAGGTCTCTGTG
ACGAGACGACGTCGCATTTCCAGTTTAACGAGTTCGGTCTCGATGTAAGT
GAGGATGGTAACGTTGTTGTCCATTTTTGCTCCGCTAGTGGTCAGTAGAG
ACAATAGAATTGCTTTATTGGTGTGCAGTGTCGTCTTGTACAGACGAAAT
TACATATGCGATGCGCGCCGAATCTCTCTAACTACCGAAAATCTTCCTTC
CATTCTTCCTCAGCGGCAATCGTCGATccggaaagaggaagaaaatcgcT
ATATAACAGACAAAGAGCACAAAATGAAGAGTCCATTTGACACGCTCCGT
CACAGTCCCCGCCTGGTAGCCTTCACCCCGGCCAAACGGTTTTTGCTTGG
GGCCTCAGTATCCCTGGTGCTTATCGGCATCCTCTTCGTGATTGGCTTCT
TCGATAACCGAGCTATGTCTTCTCCCAGCACAAGTACAACGCATCGTCGG
TCTGCCGGTGTGCGTCCTGCGTCTTTGCGAGGCACCGTCGGCGATGTTGG
CCCTGCTGCTGGGCCCGCTGCAGCGGCCTCTCTCGCCTCCACTCTCACCG
GAGGGGTGCTCTTCCCTCGCAGTGAGGATGTGGACCACCACAAACCACGT
GTGATGATGATTCCATCCTTGAAATCGTTTTCTCGCCGTAATGTCCACCA
TTATGATACACACGACCCGAATGGCAGGTTGTCGGGAGGAAAGTCCGCCG
TGAAGCCGCCGGCGGGAAGCCgtgagaaaaagagacgggaatcggaagaa
gaggacacaGCAGTGCACGTGGAAGATGTAGATATCGATGATGACGGAAA
GCGGCGTTCGGCTTCCCCCGACGCGGAGGATATTCTGAACATCGAACACG
CTTCGGATAAACTCGCTGTGGTACTGCCTCACGAGTACGAGACCACGGGA
GTCGTCTCTCATTTTCATTCGATAACTGGCGTAGACAGTAATCACAACTT
TGACGTCAATGACTACTTCGGATCCTCCGTGACGAGCTTGGGCGGCACCC
CTGGAACGGGGTTGACCACGCTGGCTGTGGGCGCTCCGGGGGCCTTGGAG
AACTCTGGAATGATCTACTTCCTCGacctggagaaggacgggaaagTTAA
GAACTACACCTACCTCACCAACAAAGATAGCTCGCTGGGGGACCATTGGA
CCTCGAACGTGGCCTTGGGGTGGACCGTGGAGAACATAGGAGACCTGGAC
GGGGACGGCGTGGATGACCTGGCGGTGGGCGCCATTGGCTACCCGGTCGG
TAGCTCTCAAGGTGCGGTCTACATCCTCTTCATGACGCCGGAGCGTGGGA
TCAAGAGTCATCAGTTTATTACGACGGGAGAGGCCGGTTTTGAGCccttt
ttgaaagaaaaTTCCTGTTTTGGTTCTTCAATCGCGCGCATTGGTGACCT
GGATGGAGATGGCGTGACAGAACTCGCAGTGGGAGCCATGGGTCTCGGGA
AACAACGCGGTGGAATCTATATTCTCTACATGAATAAAGACGGGACTGTG
AAAAAGAGCACGCAGATCTCCTCGCTTTACGGATGGGATCACAAACTCAA
CGTAGAAGACCAGTTCGGGCACGCTGTGCGGGCTATCGGGGACCTAGACG
GGGATGGAATCACGGAATTGGCTGTAGGCGGGGATGGATTTCCTTCAGGA
GAGTTTTATGGCTCTGTGTGGATCCTATACTtgaccaaggaggggggtgt
GAAGCAATGGCGACGAATCGATGAATTAGACGGACACCTAGAGCCAGAAT
CCCTTTTCGGGGGGTCCATCGACATGCTTGGAGACCTGGACGGCGATGGC
TTTCCAGAACTGATTGTAGGGGCGCCGGGAGCGAACGGATTCAAGGGGGA
TGCGTTCATTGTTTCATTGGGTGCCAATGCCACTGTGAAGCACTACAAAT
CCCTGGTGGACGAAGTAGGTGTCCTTTCCGATAGCatcaaggaagaggat
gagttTGCATGGTCCCTTTGTAACATTGGAGACATTAACGGAGATGGCGT
GCCTGATTTGGCCTTGGGAGCAGAGACGTCACCTGCGGATAAGAACTTTG
GCTCGTTGCACGTAGTGTTCTTGACTCCCCGATAA

Coding sequence (CDS) from alignment at CM002458.1:737292..739476+

>rna2033 ID=rna2033|Name=rna2033|organism=Nannochloropsis gaditana|type=CDS|length=4032bp|location=Sequence derived from alignment at CM002458.1:737292..739476+ (Nannochloropsis gaditana)
ATGGATCAACCTGGATATAACAACAGCCCTCGAGGCTCCATATTGAGCCC
GGGCCTGACTCACCGTGCAAGCAAGACCCCCAGGAGTTCAGGTCTCTGTG
ACGAGACGACGTCGCATTTCCAGTTTAACGAGTTCGGTCTCGATCGGCAA
TCGTCGATccggaaagaggaagaaaatcgcTATATAACAGACAAAGAGCA
CAAAATGAAGAGTCCATTTGACACGCTCCGTCACAGTCCCCGCCTGGTAG
CCTTCACCCCGGCCAAACGGTTTTTGCTTGGGGCCTCAGTATCCCTGGTG
CTTATCGGCATCCTCTTCGTGATTGGCTTCTTCGATAACCGAGCTATGTC
TTCTCCCAGCACAAGTACAACGCATCGTCGGTCTGCCGGTGTGCGTCCTG
CGTCTTTGCGAGGCACCGTCGGCGATGTTGGCCCTGCTGCTGGGCCCGCT
GCAGCGGCCTCTCTCGCCTCCACTCTCACCGGAGGGGTGCTCTTCCCTCG
CAGTGAGGATGTGGACCACCACAAACCACGTGTGATGATGATTCCATCCT
TGAAATCGTTTTCTCGCCGTAATGTCCACCATTATGATACACACGACCCG
AATGGCAGGTTGTCGGGAGGAAAGTCCGCCGTGAAGCCGCCGGCGGGAAG
CCgtgagaaaaagagacgggaatcggaagaagaggacacaGCAGTGCACG
TGGAAGATGTAGATATCGATGATGACGGAAAGCGGCGTTCGGCTTCCCCC
GACGCGGAGGATATTCTGAACATCGAACACGCTTCGGATAAACTCGCTGT
GGTACTGCCTCACGAGTACGAGACCACGGGAGTCGTCTCTCATTTTCATT
CGATAACTGGCGTAGACAGTAATCACAACTTTGACGTCAATGACTACTTC
GGATCCTCCGTGACGAGCTTGGGCGGCACCCCTGGAACGGGGTTGACCAC
GCTGGCTGTGGGCGCTCCGGGGGCCTTGGAGAACTCTGGAATGATCTACT
TCCTCGacctggagaaggacgggaaagTTAAGAACTACACCTACCTCACC
AACAAAGATAGCTCGCTGGGGGACCATTGGACCTCGAACGTGGCCTTGGG
GTGGACCGTGGAGAACATAGGAGACCTGGACGGGGACGGCGTGGATGACC
TGGCGGTGGGCGCCATTGGCTACCCGGTCGGTAGCTCTCAAGGTGCGGTC
TACATCCTCTTCATGACGCCGGAGCGTGGGATCAAGAGTCATCAGTTTAT
TACGACGGGAGAGGCCGGTTTTGAGCcctttttgaaagaaaaTTCCTGTT
TTGGTTCTTCAATCGCGCGCATTGGTGACCTGGATGGAGATGGCGTGACA
GAACTCGCAGTGGGAGCCATGGGTCTCGGGAAACAACGCGGTGGAATCTA
TATTCTCTACATGAATAAAGACGGGACTGTGAAAAAGAGCACGCAGATCT
CCTCGCTTTACGGATGGGATCACAAACTCAACGTAGAAGACCAGTTCGGG
CACGCTGTGCGGGCTATCGGGGACCTAGACGGGGATGGAATCACGGAATT
GGCTGTAGGCGGGGATGGATTTCCTTCAGGAGAGTTTTATGGCTCTGTGT
GGATCCTATACTtgaccaaggaggggggtgtGAAGCAATGGCGACGAATC
GATGAATTAGACGGACACCTAGAGCCAGAATCCCTTTTCGGGGGGTCCAT
CGACATGCTTGGAGACCTGGACGGCGATGGCTTTCCAGAACTGATTGTAG
GGGCGCCGGGAGCGAACGGATTCAAGGGGGATGCGTTCATTGTTTCATTG
GGTGCCAATGCCACTGTGAAGCACTACAAATCCCTGGTGGACGAAGTAGG
TGTCCTTTCCGATAGCatcaaggaagaggatgagttTGCATGGTCCCTTT
GTAACATTGGAGACATTAACGGAGATGGCGTGCCTGATTTGGCCTTGGGA
GCAGAGACGTCACCTGCGGATAAGAACTTTGGCTCGTTGCACGTAGTGTT
CTTGACTCCCCGATAAATGGATCAACCTGGATATAACAACAGCCCTCGAG
GCTCCATATTGAGCCCGGGCCTGACTCACCGTGCAAGCAAGACCCCCAGG
AGTTCAGGTCTCTGTGACGAGACGACGTCGCATTTCCAGTTTAACGAGTT
CGGTCTCGATCGGCAATCGTCGATccggaaagaggaagaaaatcgcTATA
TAACAGACAAAGAGCACAAAATGAAGAGTCCATTTGACACGCTCCGTCAC
AGTCCCCGCCTGGTAGCCTTCACCCCGGCCAAACGGTTTTTGCTTGGGGC
CTCAGTATCCCTGGTGCTTATCGGCATCCTCTTCGTGATTGGCTTCTTCG
ATAACCGAGCTATGTCTTCTCCCAGCACAAGTACAACGCATCGTCGGTCT
GCCGGTGTGCGTCCTGCGTCTTTGCGAGGCACCGTCGGCGATGTTGGCCC
TGCTGCTGGGCCCGCTGCAGCGGCCTCTCTCGCCTCCACTCTCACCGGAG
GGGTGCTCTTCCCTCGCAGTGAGGATGTGGACCACCACAAACCACGTGTG
ATGATGATTCCATCCTTGAAATCGTTTTCTCGCCGTAATGTCCACCATTA
TGATACACACGACCCGAATGGCAGGTTGTCGGGAGGAAAGTCCGCCGTGA
AGCCGCCGGCGGGAAGCCgtgagaaaaagagacgggaatcggaagaagag
gacacaGCAGTGCACGTGGAAGATGTAGATATCGATGATGACGGAAAGCG
GCGTTCGGCTTCCCCCGACGCGGAGGATATTCTGAACATCGAACACGCTT
CGGATAAACTCGCTGTGGTACTGCCTCACGAGTACGAGACCACGGGAGTC
GTCTCTCATTTTCATTCGATAACTGGCGTAGACAGTAATCACAACTTTGA
CGTCAATGACTACTTCGGATCCTCCGTGACGAGCTTGGGCGGCACCCCTG
GAACGGGGTTGACCACGCTGGCTGTGGGCGCTCCGGGGGCCTTGGAGAAC
TCTGGAATGATCTACTTCCTCGacctggagaaggacgggaaagTTAAGAA
CTACACCTACCTCACCAACAAAGATAGCTCGCTGGGGGACCATTGGACCT
CGAACGTGGCCTTGGGGTGGACCGTGGAGAACATAGGAGACCTGGACGGG
GACGGCGTGGATGACCTGGCGGTGGGCGCCATTGGCTACCCGGTCGGTAG
CTCTCAAGGTGCGGTCTACATCCTCTTCATGACGCCGGAGCGTGGGATCA
AGAGTCATCAGTTTATTACGACGGGAGAGGCCGGTTTTGAGCcctttttg
aaagaaaaTTCCTGTTTTGGTTCTTCAATCGCGCGCATTGGTGACCTGGA
TGGAGATGGCGTGACAGAACTCGCAGTGGGAGCCATGGGTCTCGGGAAAC
AACGCGGTGGAATCTATATTCTCTACATGAATAAAGACGGGACTGTGAAA
AAGAGCACGCAGATCTCCTCGCTTTACGGATGGGATCACAAACTCAACGT
AGAAGACCAGTTCGGGCACGCTGTGCGGGCTATCGGGGACCTAGACGGGG
ATGGAATCACGGAATTGGCTGTAGGCGGGGATGGATTTCCTTCAGGAGAG
TTTTATGGCTCTGTGTGGATCCTATACTtgaccaaggaggggggtgtGAA
GCAATGGCGACGAATCGATGAATTAGACGGACACCTAGAGCCAGAATCCC
TTTTCGGGGGGTCCATCGACATGCTTGGAGACCTGGACGGCGATGGCTTT
CCAGAACTGATTGTAGGGGCGCCGGGAGCGAACGGATTCAAGGGGGATGC
GTTCATTGTTTCATTGGGTGCCAATGCCACTGTGAAGCACTACAAATCCC
TGGTGGACGAAGTAGGTGTCCTTTCCGATAGCatcaaggaagaggatgag
ttTGCATGGTCCCTTTGTAACATTGGAGACATTAACGGAGATGGCGTGCC
TGATTTGGCCTTGGGAGCAGAGACGTCACCTGCGGATAAGAACTTTGGCT
CGTTGCACGTAGTGTTCTTGACTCCCCGATAA

Synonyms

Publications