rna2033, rna2033 (mRNA) Nannochloropsis gaditana

Overview
Namerna2033
Unique Namerna2033
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1737
Alignment locationCM002458.1:737292..739476 +

Link to JBrowse

Properties
Property NameValue
Productfg-gap repeat domain protein
Orig transcript idgnl|cribi|Naga_100177g14.1003.mrna
Orig protein idgnl|cribi|Naga_100177g14.1003
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:737292..739476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g14gene1944Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2033rna2033-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28646.1cds2025Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2033 ID=rna2033|Name=rna2033|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp
GTCCTCCGTGCCTTACGAATGTATCGTATATGTCCTTTAGCGCTAATTGT
AATTCTCTGATTTCTTTTCTTACCAAGGACAGCTACATCTCTACACGAAG
GATGATGCAACGTAGCAGAACTCTTATCCTGTCGTTGGCAGCTCTGCTGG
GTGGGAGTGTTTTAGTTGACGCTGCCCCCAAAATACAGTCATTGTCGTGC
TCTCCTGGAATTGGGGACGCACGCAACGCAGATGTAATCGTGACCTGTGC
CCTGCGCGTTGTAGATGCAGACAGTGAGATCGACTTTGCCTACACACGCC
TGGTCTCCCCCTCTGGCAAATTCTCTCTGCCCTTGCTTTTCGACGGAGGA
AAGTCTTTTGGGCTGACCTCATATACCGGTGCAAATTTGGCAGCCAGTGC
CACAATCCCTCGCCATGCAGAAGCCGGATACTGGCAGCTCGATTTTAGCG
GTGTGGATGGCTTGCAAGTGGTAAACAAGCAGGGTGCCTCCGTCATGATC
ACCTCCAAAGAGGCACGGGACCTTGGGCTCTCTCGTTTCGTGAAGATCTA
TTCCCCTGACGACAAGACCCCTCCTTACATCAAGGATGTCGTCTGCACCA
CGCCTGTAGATGTCAACATCACCACTACAAACACGGTATACGTAAAGTGC
GACTTTACTGTTATAGACACCGGTTCTGGACCCGCAACAGTCCGTGCCAG
CTTTGTCAGCCCTGAGGGTGACGCACTTCTTCATATGACGGCTGGCATCA
TAAAGGACGTGGTCTCTAGCAATCCCAGCACTGGAGAGGTGGTACTCTCT
GCCTCCGTTCCCGTATATACCGGCATGCCGTCTGGAAATTGGACGATGGT
CACGGCCATGCCGCTGGCTCCCAGCGCCGAGGACCGGAACGGGAATGAGT
TCTATTACGAGGGAGTCGACACTTCCCTTATCTGGACGCGCCCTACCTTC
GAGGTCTTCTCCCAACCGGACACGACCCCGCCTGTAGTACAGAAATTTGG
GTGCTCTGCAACGCAAGTAATTGTCCCCTTCGGGGGCGAGGACACTTACT
CATGCCAGCTCGTCGTGCAAGACGATCTCTCTGGCTTTGCTTACGGTGAG
CTTGTATTCGAGAACCCGGATCGCAACAGTACCGCTACGCTCCGTTTCGA
TGCAAATACACGTCAAGTACAATTTGCTCGCGGAGGCATCTTCGCACCAA
CTTTGAGTTTTGATCCGACAGCGCCAGGCGGCATGTGGACAGTCAGCAAG
GAGGGCTTACTCCTGCGGGACCTAGCAGGCAACTTCATCAGTTATAATCC
AAAAGAGTTGAACGATCGATCCTACCCTACATTTTTGCTTGTATCCAAGA
CCGACGCGCCCCCTGCAAAGGATAGTAAGAGCCCAGCCTCGTCCCTGAAG
GCCTCGTATTCTATCATTTTGGCATCTCTTCTTGGACTCTTCATTCTCCA
AAGCCGGTAAATATGTAAGGAGATATTGAAAGCAAATACACTTATCATTC
AGGAAAGTATGAGCGATGTGCGCCTCTGGAAAGGGCGGCAACGTCAGATT
CGAGGAGGGTGTGTGTGCAGGAAAAAGTAAGGGCTGGAAATTACACCGTG
CACCATAAATGACATTTACTGGGTCCTTTGCGTGAATCTAGTAAGGAATG
TGACAAAAGTGGTTTGCGCTGTGGCTCTTGACTTCAGGAAAAGAAGAAGA
AACAACAAAGGAAATGGAAGCATTTATGATTCTCACC
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protein sequence of rna2033

>rna2033-protein ID=rna2033-protein|Name=rna2033|organism=Nannochloropsis gaditana|type=polypeptide|length=671bp
MDQPGYNNSPRGSILSPGLTHRASKTPRSSGLCDETTSHFQFNEFGLDRQ
SSIRKEEENRYITDKEHKMKSPFDTLRHSPRLVAFTPAKRFLLGASVSLV
LIGILFVIGFFDNRAMSSPSTSTTHRRSAGVRPASLRGTVGDVGPAAGPA
AAASLASTLTGGVLFPRSEDVDHHKPRVMMIPSLKSFSRRNVHHYDTHDP
NGRLSGGKSAVKPPAGSREKKRRESEEEDTAVHVEDVDIDDDGKRRSASP
DAEDILNIEHASDKLAVVLPHEYETTGVVSHFHSITGVDSNHNFDVNDYF
GSSVTSLGGTPGTGLTTLAVGAPGALENSGMIYFLDLEKDGKVKNYTYLT
NKDSSLGDHWTSNVALGWTVENIGDLDGDGVDDLAVGAIGYPVGSSQGAV
YILFMTPERGIKSHQFITTGEAGFEPFLKENSCFGSSIARIGDLDGDGVT
ELAVGAMGLGKQRGGIYILYMNKDGTVKKSTQISSLYGWDHKLNVEDQFG
HAVRAIGDLDGDGITELAVGGDGFPSGEFYGSVWILYLTKEGGVKQWRRI
DELDGHLEPESLFGGSIDMLGDLDGDGFPELIVGAPGANGFKGDAFIVSL
GANATVKHYKSLVDEVGVLSDSIKEEDEFAWSLCNIGDINGDGVPDLALG
AETSPADKNFGSLHVVFLTPR
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mRNA from alignment at CM002458.1:737292..739476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2033 ID=rna2033|Name=rna2033|organism=Nannochloropsis gaditana|type=mRNA|length=2185bp|location=Sequence derived from alignment at CM002458.1:737292..739476+ (Nannochloropsis gaditana)
ATGGATCAACCTGGATATAACAACAGCCCTCGAGGCTCCATATTGAGCCC GGGCCTGACTCACCGTGCAAGCAAGACCCCCAGGAGTTCAGGTCTCTGTG ACGAGACGACGTCGCATTTCCAGTTTAACGAGTTCGGTCTCGATGTAAGT GAGGATGGTAACGTTGTTGTCCATTTTTGCTCCGCTAGTGGTCAGTAGAG ACAATAGAATTGCTTTATTGGTGTGCAGTGTCGTCTTGTACAGACGAAAT TACATATGCGATGCGCGCCGAATCTCTCTAACTACCGAAAATCTTCCTTC CATTCTTCCTCAGCGGCAATCGTCGATccggaaagaggaagaaaatcgcT ATATAACAGACAAAGAGCACAAAATGAAGAGTCCATTTGACACGCTCCGT CACAGTCCCCGCCTGGTAGCCTTCACCCCGGCCAAACGGTTTTTGCTTGG GGCCTCAGTATCCCTGGTGCTTATCGGCATCCTCTTCGTGATTGGCTTCT TCGATAACCGAGCTATGTCTTCTCCCAGCACAAGTACAACGCATCGTCGG TCTGCCGGTGTGCGTCCTGCGTCTTTGCGAGGCACCGTCGGCGATGTTGG CCCTGCTGCTGGGCCCGCTGCAGCGGCCTCTCTCGCCTCCACTCTCACCG GAGGGGTGCTCTTCCCTCGCAGTGAGGATGTGGACCACCACAAACCACGT GTGATGATGATTCCATCCTTGAAATCGTTTTCTCGCCGTAATGTCCACCA TTATGATACACACGACCCGAATGGCAGGTTGTCGGGAGGAAAGTCCGCCG TGAAGCCGCCGGCGGGAAGCCgtgagaaaaagagacgggaatcggaagaa gaggacacaGCAGTGCACGTGGAAGATGTAGATATCGATGATGACGGAAA GCGGCGTTCGGCTTCCCCCGACGCGGAGGATATTCTGAACATCGAACACG CTTCGGATAAACTCGCTGTGGTACTGCCTCACGAGTACGAGACCACGGGA GTCGTCTCTCATTTTCATTCGATAACTGGCGTAGACAGTAATCACAACTT TGACGTCAATGACTACTTCGGATCCTCCGTGACGAGCTTGGGCGGCACCC CTGGAACGGGGTTGACCACGCTGGCTGTGGGCGCTCCGGGGGCCTTGGAG AACTCTGGAATGATCTACTTCCTCGacctggagaaggacgggaaagTTAA GAACTACACCTACCTCACCAACAAAGATAGCTCGCTGGGGGACCATTGGA CCTCGAACGTGGCCTTGGGGTGGACCGTGGAGAACATAGGAGACCTGGAC GGGGACGGCGTGGATGACCTGGCGGTGGGCGCCATTGGCTACCCGGTCGG TAGCTCTCAAGGTGCGGTCTACATCCTCTTCATGACGCCGGAGCGTGGGA TCAAGAGTCATCAGTTTATTACGACGGGAGAGGCCGGTTTTGAGCccttt ttgaaagaaaaTTCCTGTTTTGGTTCTTCAATCGCGCGCATTGGTGACCT GGATGGAGATGGCGTGACAGAACTCGCAGTGGGAGCCATGGGTCTCGGGA AACAACGCGGTGGAATCTATATTCTCTACATGAATAAAGACGGGACTGTG AAAAAGAGCACGCAGATCTCCTCGCTTTACGGATGGGATCACAAACTCAA CGTAGAAGACCAGTTCGGGCACGCTGTGCGGGCTATCGGGGACCTAGACG GGGATGGAATCACGGAATTGGCTGTAGGCGGGGATGGATTTCCTTCAGGA GAGTTTTATGGCTCTGTGTGGATCCTATACTtgaccaaggaggggggtgt GAAGCAATGGCGACGAATCGATGAATTAGACGGACACCTAGAGCCAGAAT CCCTTTTCGGGGGGTCCATCGACATGCTTGGAGACCTGGACGGCGATGGC TTTCCAGAACTGATTGTAGGGGCGCCGGGAGCGAACGGATTCAAGGGGGA TGCGTTCATTGTTTCATTGGGTGCCAATGCCACTGTGAAGCACTACAAAT CCCTGGTGGACGAAGTAGGTGTCCTTTCCGATAGCatcaaggaagaggat gagttTGCATGGTCCCTTTGTAACATTGGAGACATTAACGGAGATGGCGT GCCTGATTTGGCCTTGGGAGCAGAGACGTCACCTGCGGATAAGAACTTTG GCTCGTTGCACGTAGTGTTCTTGACTCCCCGATAA
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Coding sequence (CDS) from alignment at CM002458.1:737292..739476+

>rna2033 ID=rna2033|Name=rna2033|organism=Nannochloropsis gaditana|type=CDS|length=4032bp|location=Sequence derived from alignment at CM002458.1:737292..739476+ (Nannochloropsis gaditana)
ATGGATCAACCTGGATATAACAACAGCCCTCGAGGCTCCATATTGAGCCC
GGGCCTGACTCACCGTGCAAGCAAGACCCCCAGGAGTTCAGGTCTCTGTG
ACGAGACGACGTCGCATTTCCAGTTTAACGAGTTCGGTCTCGATCGGCAA
TCGTCGATccggaaagaggaagaaaatcgcTATATAACAGACAAAGAGCA
CAAAATGAAGAGTCCATTTGACACGCTCCGTCACAGTCCCCGCCTGGTAG
CCTTCACCCCGGCCAAACGGTTTTTGCTTGGGGCCTCAGTATCCCTGGTG
CTTATCGGCATCCTCTTCGTGATTGGCTTCTTCGATAACCGAGCTATGTC
TTCTCCCAGCACAAGTACAACGCATCGTCGGTCTGCCGGTGTGCGTCCTG
CGTCTTTGCGAGGCACCGTCGGCGATGTTGGCCCTGCTGCTGGGCCCGCT
GCAGCGGCCTCTCTCGCCTCCACTCTCACCGGAGGGGTGCTCTTCCCTCG
CAGTGAGGATGTGGACCACCACAAACCACGTGTGATGATGATTCCATCCT
TGAAATCGTTTTCTCGCCGTAATGTCCACCATTATGATACACACGACCCG
AATGGCAGGTTGTCGGGAGGAAAGTCCGCCGTGAAGCCGCCGGCGGGAAG
CCgtgagaaaaagagacgggaatcggaagaagaggacacaGCAGTGCACG
TGGAAGATGTAGATATCGATGATGACGGAAAGCGGCGTTCGGCTTCCCCC
GACGCGGAGGATATTCTGAACATCGAACACGCTTCGGATAAACTCGCTGT
GGTACTGCCTCACGAGTACGAGACCACGGGAGTCGTCTCTCATTTTCATT
CGATAACTGGCGTAGACAGTAATCACAACTTTGACGTCAATGACTACTTC
GGATCCTCCGTGACGAGCTTGGGCGGCACCCCTGGAACGGGGTTGACCAC
GCTGGCTGTGGGCGCTCCGGGGGCCTTGGAGAACTCTGGAATGATCTACT
TCCTCGacctggagaaggacgggaaagTTAAGAACTACACCTACCTCACC
AACAAAGATAGCTCGCTGGGGGACCATTGGACCTCGAACGTGGCCTTGGG
GTGGACCGTGGAGAACATAGGAGACCTGGACGGGGACGGCGTGGATGACC
TGGCGGTGGGCGCCATTGGCTACCCGGTCGGTAGCTCTCAAGGTGCGGTC
TACATCCTCTTCATGACGCCGGAGCGTGGGATCAAGAGTCATCAGTTTAT
TACGACGGGAGAGGCCGGTTTTGAGCcctttttgaaagaaaaTTCCTGTT
TTGGTTCTTCAATCGCGCGCATTGGTGACCTGGATGGAGATGGCGTGACA
GAACTCGCAGTGGGAGCCATGGGTCTCGGGAAACAACGCGGTGGAATCTA
TATTCTCTACATGAATAAAGACGGGACTGTGAAAAAGAGCACGCAGATCT
CCTCGCTTTACGGATGGGATCACAAACTCAACGTAGAAGACCAGTTCGGG
CACGCTGTGCGGGCTATCGGGGACCTAGACGGGGATGGAATCACGGAATT
GGCTGTAGGCGGGGATGGATTTCCTTCAGGAGAGTTTTATGGCTCTGTGT
GGATCCTATACTtgaccaaggaggggggtgtGAAGCAATGGCGACGAATC
GATGAATTAGACGGACACCTAGAGCCAGAATCCCTTTTCGGGGGGTCCAT
CGACATGCTTGGAGACCTGGACGGCGATGGCTTTCCAGAACTGATTGTAG
GGGCGCCGGGAGCGAACGGATTCAAGGGGGATGCGTTCATTGTTTCATTG
GGTGCCAATGCCACTGTGAAGCACTACAAATCCCTGGTGGACGAAGTAGG
TGTCCTTTCCGATAGCatcaaggaagaggatgagttTGCATGGTCCCTTT
GTAACATTGGAGACATTAACGGAGATGGCGTGCCTGATTTGGCCTTGGGA
GCAGAGACGTCACCTGCGGATAAGAACTTTGGCTCGTTGCACGTAGTGTT
CTTGACTCCCCGATAAATGGATCAACCTGGATATAACAACAGCCCTCGAG
GCTCCATATTGAGCCCGGGCCTGACTCACCGTGCAAGCAAGACCCCCAGG
AGTTCAGGTCTCTGTGACGAGACGACGTCGCATTTCCAGTTTAACGAGTT
CGGTCTCGATCGGCAATCGTCGATccggaaagaggaagaaaatcgcTATA
TAACAGACAAAGAGCACAAAATGAAGAGTCCATTTGACACGCTCCGTCAC
AGTCCCCGCCTGGTAGCCTTCACCCCGGCCAAACGGTTTTTGCTTGGGGC
CTCAGTATCCCTGGTGCTTATCGGCATCCTCTTCGTGATTGGCTTCTTCG
ATAACCGAGCTATGTCTTCTCCCAGCACAAGTACAACGCATCGTCGGTCT
GCCGGTGTGCGTCCTGCGTCTTTGCGAGGCACCGTCGGCGATGTTGGCCC
TGCTGCTGGGCCCGCTGCAGCGGCCTCTCTCGCCTCCACTCTCACCGGAG
GGGTGCTCTTCCCTCGCAGTGAGGATGTGGACCACCACAAACCACGTGTG
ATGATGATTCCATCCTTGAAATCGTTTTCTCGCCGTAATGTCCACCATTA
TGATACACACGACCCGAATGGCAGGTTGTCGGGAGGAAAGTCCGCCGTGA
AGCCGCCGGCGGGAAGCCgtgagaaaaagagacgggaatcggaagaagag
gacacaGCAGTGCACGTGGAAGATGTAGATATCGATGATGACGGAAAGCG
GCGTTCGGCTTCCCCCGACGCGGAGGATATTCTGAACATCGAACACGCTT
CGGATAAACTCGCTGTGGTACTGCCTCACGAGTACGAGACCACGGGAGTC
GTCTCTCATTTTCATTCGATAACTGGCGTAGACAGTAATCACAACTTTGA
CGTCAATGACTACTTCGGATCCTCCGTGACGAGCTTGGGCGGCACCCCTG
GAACGGGGTTGACCACGCTGGCTGTGGGCGCTCCGGGGGCCTTGGAGAAC
TCTGGAATGATCTACTTCCTCGacctggagaaggacgggaaagTTAAGAA
CTACACCTACCTCACCAACAAAGATAGCTCGCTGGGGGACCATTGGACCT
CGAACGTGGCCTTGGGGTGGACCGTGGAGAACATAGGAGACCTGGACGGG
GACGGCGTGGATGACCTGGCGGTGGGCGCCATTGGCTACCCGGTCGGTAG
CTCTCAAGGTGCGGTCTACATCCTCTTCATGACGCCGGAGCGTGGGATCA
AGAGTCATCAGTTTATTACGACGGGAGAGGCCGGTTTTGAGCcctttttg
aaagaaaaTTCCTGTTTTGGTTCTTCAATCGCGCGCATTGGTGACCTGGA
TGGAGATGGCGTGACAGAACTCGCAGTGGGAGCCATGGGTCTCGGGAAAC
AACGCGGTGGAATCTATATTCTCTACATGAATAAAGACGGGACTGTGAAA
AAGAGCACGCAGATCTCCTCGCTTTACGGATGGGATCACAAACTCAACGT
AGAAGACCAGTTCGGGCACGCTGTGCGGGCTATCGGGGACCTAGACGGGG
ATGGAATCACGGAATTGGCTGTAGGCGGGGATGGATTTCCTTCAGGAGAG
TTTTATGGCTCTGTGTGGATCCTATACTtgaccaaggaggggggtgtGAA
GCAATGGCGACGAATCGATGAATTAGACGGACACCTAGAGCCAGAATCCC
TTTTCGGGGGGTCCATCGACATGCTTGGAGACCTGGACGGCGATGGCTTT
CCAGAACTGATTGTAGGGGCGCCGGGAGCGAACGGATTCAAGGGGGATGC
GTTCATTGTTTCATTGGGTGCCAATGCCACTGTGAAGCACTACAAATCCC
TGGTGGACGAAGTAGGTGTCCTTTCCGATAGCatcaaggaagaggatgag
ttTGCATGGTCCCTTTGTAACATTGGAGACATTAACGGAGATGGCGTGCC
TGATTTGGCCTTGGGAGCAGAGACGTCACCTGCGGATAAGAACTTTGGCT
CGTTGCACGTAGTGTTCTTGACTCCCCGATAA
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Synonyms
Publications