rna2029, rna2029 (mRNA) Nannochloropsis gaditana

Overview
Namerna2029
Unique Namerna2029
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1374
Alignment locationCM002458.1:728509..730053 -

Link to JBrowse

Properties
Property NameValue
Product4fe-4s ferredoxin iron-sulfur binding domain protein
Orig transcript idgnl|cribi|Naga_100177g10.1002.mrna
Orig protein idgnl|cribi|Naga_100177g10.1002
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:728509..730053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g10gene1940Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2029rna2029-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28645.1cds2021Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2029 ID=rna2029|Name=rna2029|organism=Nannochloropsis gaditana|type=mRNA|length=1374bp
ATGTGTCACTTAAATGGCAGCAGAATCTTTTTGATTTTCGTAATATGCTG
TTGCCTCTTGAACAGCAACAGATCAGCTCTTGCCTTCGTAATGCCTACCG
CAAGAAACATAAGACATCCACTTGCGGGTCCCCTAAAGGCGAGTCGTCTA
TTCGATAATATTTTCCAAGGCAAGAAAAGCAGCAGTAGTGGCCTTGGTGA
GCGTGTGAAGCTGGGAGACCTTCGTGTAAGTCCGCTGGGTGTGGGCACGT
GGGCATGGGGAAATCAATTTCTATGGGGTTACTCTCCGCAAAAGTCCGAT
TCGTCTCTGCAAGAGACATTCGACTATGTATTGAGCAAAGGAATAAACTG
GTTTGACTCTGCAGATTCTTACGGGACTGGAAGGTTGGAAGGCAGGAGTG
AGATTTTGTTGGGTCAATTTTTAAGAGAGCACGACTATAAGCTCGGGTCA
AGCGTAAAGAGTGCTGAGGATGTCTTTGTGGCGACCAAAATTGCACCTTA
CCCCTTCCGCCTGGGTAAGGGATCCATCAAAGCTGCAATGCGCGCTTCAA
GCCGACGACTCGACAGGGGAAGAGCTGGAGTGGACATTGGCCAACTGCAT
TGGGCCCCGCCGTTAGGATGGCAAGAGAAAGCATACTGGGCGGGACTGGC
GGAGCTCAAACAGGAAGGGGATATAAAGGCTATTGGACTGAGCAACTACG
GGCCTAAAAAACTGCGGGAAGCGGCTCAGACTTTCAAGAGTGAGCACGGT
ATCAGCCTTGCATCAAACCAAGTTCAACTCTCTTTAGTCTCTCCACTACC
GCTGCGAAGCGGCTTGATCGAAACAGCTGCCGATGAGGGAGTGCGCCTTA
TCGCTTATAGTCCCCTAGGACTCGGTATACTGACGGGGCGCTACAATTTA
GAAAGGCAACAGCTGCCAGAGGGACCGCGCCGCCTACTTTTCAGAGAACT
TCTTCCTGCTCTGACGCCCGTGCTGGGTACCATGGATCAGATTGTAAACG
AGCGCACGCGCAAAAAGTATGGAGCAGTTAGTGAGCCTGTGACATGCTCC
CAGGTTGCACTAAATTGGTGTCGGGCGAAGGGCGCAATTCCAATCGTAGG
TTTAAAGAGCCTCGCTCAAGCTAGAGAAGCGACAGCTGCGCTTGATTGGT
GCTTGTCGGCAGGAGAGGTTGAGGCATTAGACCGAGCGGTGAGAAGTCTG
CCGAAGGGCAGAGGAGAGACGGTGCAGAACATTTTTCAATCGGAAGAAAA
AGTGCGGGTAATGGTCTCTTCCGAAGGATCATCACATATCACGGCATTCG
GGGATTCCTTCAACCATCGAGCACAAGGCAAGCGTAAGTATGTGATTCGG
CTTGTCCTCCATCCCTTTCCGTAA
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protein sequence of rna2029

>rna2029-protein ID=rna2029-protein|Name=rna2029|organism=Nannochloropsis gaditana|type=polypeptide|length=396bp
MLKWSLWIVWLPFLVLSRPTFLHSFSKANYMWSSLLPFSKSRAMPLLCAS
TQQNSRDLTDLTDLRSLLTEAVELMSDDPKSALSEGRWVKLICGASYQDL
PRVKALCFAYTLAGVDCIDMSASQAVVTAAEEGVGAAMLLAEQVLEAVPY
QVEAADVLTSLAGRIDALEIHTNASASSAGRDPFEDLCRRIRPQASGLRA
VSVSFPFMGTAGTAAFLKSRNAVFGRCFGPDDERPFTGVLAGVGDSPPPR
PLHIWQTDGRPMSGDIGRGTTLSAVKFAQVVLRSQALPWASSMVSEDEHF
LQLAGGTNAYTAEKLADEGLLSPASVVRGQSDATQEKDRSAWVHGLAFGG
FARMEVDRIMSQWGLGPEASLIEAPPDALLAVLRAAFGVVRPIKKR
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mRNA from alignment at CM002458.1:728509..730053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2029 ID=rna2029|Name=rna2029|organism=Nannochloropsis gaditana|type=mRNA|length=1545bp|location=Sequence derived from alignment at CM002458.1:728509..730053- (Nannochloropsis gaditana)
ATGCTCAAATGGAGTCTTTGGATCGTATGGCTACCTTTTCTAGTCTTGAG
CCGCCCAACCTTTTTGCATTCCTTTTCTAAAGCGAATTACATGTGGTCAA
GCCTGTTACCATTCTCAAAATCAAGAGCCATGCCCCTGCTTTGTGCCTCA
ACTCAACAAAACTCGAGGGACCTGACAGACCTGACAGACCTTAGATCGCT
CTTAACCGAGGCGGTAGAGCTTATGAGCGACGATCCAAAGAGCGCGCTGT
CGGAAGGACGATGGGTGAAGCTTATCTGTGGGGCTTCGTATCAGGACCTA
CCGCGGGTGAAAGCCCTCTGCTTTGCTTACACCCTAGCGGGCGTGGACTG
CATCGACATGTCGGCAAGCCAAGCGGTTGTGACGGCAGCAGAAGAAGGCG
TCGGGGCTGCCATGCTCTTGGCTGAACAAGTGCTGGGTAAAGCTTTGCCT
CGGCGGCCGTGGCTGATGGTGAGCATCAATGACCAGCAGGATTTGCACTT
CCGTAAGGCCGCTTTCGACGCCACGCGCTGCCCCCACGACTGTCCTCGGC
CCTGTGAATCAATCTGCCCTACCCAAGCAATCCCTCCACTAGACAAGGTG
GAGACGCCGCTGCCGTCGGCGCGGGGAAGGCGAGAGGGTGTGGCTAGCCC
AGAGCGCTGCTACGGCTGCGGGCGCTGCGTGAGCGTGTGCCCGCTGGGGC
TCATAGAGGCGGTGCCCTACCAGGTGGAGGCGGCGGATGTTCTCACCTCT
CTAGCGGGCCGCATCGATGCCCTGGAGATTCACACGAACGCCTCGGCATC
CTCCGCGGGGCGCGACCCCTTCGAAGACCTTTGTCGGCGCATTCGACCAC
AGGCCTCAGGCCTAAGGGCTGTCTCTGTGAGCTTTCCCTTCATGGGAACC
GCGGGAACCGCCGCTTTCCTCAAGTCCCGCAACGCCGTCTTTGGCCGATG
CTTTGGGCCGGACGATGAGCGTCCTTTCACCGGGGTCTTGGCCGGTGTCG
GAGACTCCCCACCCCCGCGGCCCCTTCACATCTGGCAGACGGACGGCAGG
CCCATGAGCGGGGACATCGGGCGCGGAACCACCTTGAGTGCCGTTAAATT
CGCTCAAGTCGTGCTCCGATCCCAAGCCCTGCCATGGGCCAGCTCCATGG
TGTCAGAAGATGAGCACTTTCTTCAGTTAGCGGGAGGAACGAACGCCTAC
ACGGCAGAAAAGCTCGCTGACGAGGGCCTGCTCTCTCCGGCATCGGTGGT
GAGAGGTCAGAGTGACGCGACTCAAGAGAAGGATCGCTCCGCGTGGGTGC
ATGGTTTGGCTTTCGGGGGCTTTGCGCGTATGGAAGTAGACCGCATCATG
AGCCAGTGGGGCCTGGGACCCGAGGCCTCTCTGATTGAAGCACCTCCCGA
CGCCTTGCTCGCTGTGCTTAGGGCCGCTTTTGGAGTGGTGCGGCCGATCA
AGAAGAGGTAGCGTTGGGCCTTTTCTGTGCAAAGCAAGATATTAAATTCA
AGTGTAGATATTGTACAAAGAATCAGTTCAAGTCATGAGAGATTA
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Coding sequence (CDS) from alignment at CM002458.1:728509..730053-

>rna2029 ID=rna2029|Name=rna2029|organism=Nannochloropsis gaditana|type=CDS|length=2382bp|location=Sequence derived from alignment at CM002458.1:728509..730053- (Nannochloropsis gaditana)
AGGCGGTGCCCTACCAGGTGGAGGCGGCGGATGTTCTCACCTCTCTAGCG
GGCCGCATCGATGCCCTGGAGATTCACACGAACGCCTCGGCATCCTCCGC
GGGGCGCGACCCCTTCGAAGACCTTTGTCGGCGCATTCGACCACAGGCCT
CAGGCCTAAGGGCTGTCTCTGTGAGCTTTCCCTTCATGGGAACCGCGGGA
ACCGCCGCTTTCCTCAAGTCCCGCAACGCCGTCTTTGGCCGATGCTTTGG
GCCGGACGATGAGCGTCCTTTCACCGGGGTCTTGGCCGGTGTCGGAGACT
CCCCACCCCCGCGGCCCCTTCACATCTGGCAGACGGACGGCAGGCCCATG
AGCGGGGACATCGGGCGCGGAACCACCTTGAGTGCCGTTAAATTCGCTCA
AGTCGTGCTCCGATCCCAAGCCCTGCCATGGGCCAGCTCCATGGTGTCAG
AAGATGAGCACTTTCTTCAGTTAGCGGGAGGAACGAACGCCTACACGGCA
GAAAAGCTCGCTGACGAGGGCCTGCTCTCTCCGGCATCGGTGGTGAGAGG
TCAGAGTGACGCGACTCAAGAGAAGGATCGCTCCGCGTGGGTGCATGGTT
TGGCTTTCGGGGGCTTTGCGCGTATGGAAGTAGACCGCATCATGAGCCAG
TGGGGCCTGGGACCCGAGGCCTCTCTGATTGAAGCACCTCCCGACGCCTT
GCTCGCTGTGCTTAGGGCCGCTTTTGGAGTGGTGCGGCCGATCAAGAAGA
GGTAGATGCTCAAATGGAGTCTTTGGATCGTATGGCTACCTTTTCTAGTC
TTGAGCCGCCCAACCTTTTTGCATTCCTTTTCTAAAGCGAATTACATGTG
GTCAAGCCTGTTACCATTCTCAAAATCAAGAGCCATGCCCCTGCTTTGTG
CCTCAACTCAACAAAACTCGAGGGACCTGACAGACCTGACAGACCTTAGA
TCGCTCTTAACCGAGGCGGTAGAGCTTATGAGCGACGATCCAAAGAGCGC
GCTGTCGGAAGGACGATGGGTGAAGCTTATCTGTGGGGCTTCGTATCAGG
ACCTACCGCGGGTGAAAGCCCTCTGCTTTGCTTACACCCTAGCGGGCGTG
GACTGCATCGACATGTCGGCAAGCCAAGCGGTTGTGACGGCAGCAGAAGA
AGGCGTCGGGGCTGCCATGCTCTTGGCTGAACAAGTGCTGGAGGCGGTGC
CCTACCAGGTGGAGGCGGCGGATGTTCTCACCTCTCTAGCGGGCCGCATC
GATGCCCTGGAGATTCACACGAACGCCTCGGCATCCTCCGCGGGGCGCGA
CCCCTTCGAAGACCTTTGTCGGCGCATTCGACCACAGGCCTCAGGCCTAA
GGGCTGTCTCTGTGAGCTTTCCCTTCATGGGAACCGCGGGAACCGCCGCT
TTCCTCAAGTCCCGCAACGCCGTCTTTGGCCGATGCTTTGGGCCGGACGA
TGAGCGTCCTTTCACCGGGGTCTTGGCCGGTGTCGGAGACTCCCCACCCC
CGCGGCCCCTTCACATCTGGCAGACGGACGGCAGGCCCATGAGCGGGGAC
ATCGGGCGCGGAACCACCTTGAGTGCCGTTAAATTCGCTCAAGTCGTGCT
CCGATCCCAAGCCCTGCCATGGGCCAGCTCCATGGTGTCAGAAGATGAGC
ACTTTCTTCAGTTAGCGGGAGGAACGAACGCCTACACGGCAGAAAAGCTC
GCTGACGAGGGCCTGCTCTCTCCGGCATCGGTGGTGAGAGGTCAGAGTGA
CGCGACTCAAGAGAAGGATCGCTCCGCGTGGGTGCATGGTTTGGCTTTCG
GGGGCTTTGCGCGTATGGAAGTAGACCGCATCATGAGCCAGTGGGGCCTG
GGACCCGAGGCCTCTCTGATTGAAGCACCTCCCGACGCCTTGCTCGCTGT
GCTTAGGGCCGCTTTTGGAGTGGTGCGGCCGATCAAGAAGAGGTAGATGC
TCAAATGGAGTCTTTGGATCGTATGGCTACCTTTTCTAGTCTTGAGCCGC
CCAACCTTTTTGCATTCCTTTTCTAAAGCGAATTACATGTGGTCAAGCCT
GTTACCATTCTCAAAATCAAGAGCCATGCCCCTGCTTTGTGCCTCAACTC
AACAAAACTCGAGGGACCTGACAGACCTGACAGACCTTAGATCGCTCTTA
ACCGAGGCGGTAGAGCTTATGAGCGACGATCCAAAGAGCGCGCTGTCGGA
AGGACGATGGGTGAAGCTTATCTGTGGGGCTTCGTATCAGGACCTACCGC
GGGTGAAAGCCCTCTGCTTTGCTTACACCCTAGCGGGCGTGGACTGCATC
GACATGTCGGCAAGCCAAGCGGTTGTGACGGCAGCAGAAGAAGGCGTCGG
GGCTGCCATGCTCTTGGCTGAACAAGTGCTGG
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Synonyms
Publications