rna2028, rna2028 (mRNA) Nannochloropsis gaditana

Overview
Namerna2028
Unique Namerna2028
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length651
Alignment locationCM002458.1:726773..728330 -

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Properties
Property NameValue
Productaldo keto reductase
Orig transcript idgnl|cribi|Naga_100177g9.1014.mrna
Orig protein idgnl|cribi|Naga_100177g9.1014
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:726773..728330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g9gene1939Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2028rna2028-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28657.1cds2020Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2028 ID=rna2028|Name=rna2028|organism=Nannochloropsis gaditana|type=mRNA|length=651bp
ATGCATCTTACGCCGTTAAACGAAGATGAGAAATCTGAGCTTGCATGGCT
TCATTGGAAGAGCGAAATTACGCGATTGAGCAAACGCAGTCGTCGTCTCC
GATCTGGTGCGGAGTTTGACAGGGAGATTGACCGGATCAATGAGCGGGAG
GGCTCAGGCACGATCTCCACAGAGGGAAGGGAGTATGCAGGACGGAGAGT
GGAGAGAAAAGACCAAAAGAGTTTGCGGAAAGAATTTGCGCCACCGAGCG
CTCTTGGGATGTCCGTGTGGAGGCACTGTGGGACCAGGATGACCGCTTTT
GGAGGGTCGACTAGCGCCCTGCCTGGGAGCGCTCAGTCAGTAGGTGTGTC
ACCAGACATGCCGATCTATCCTTGTACATGCTATTCCTTAGTTAGGGCGA
CAAGGCCCGGAAAAGAGACAACAAGCCTACGGAACGGTGAACCCGTAGAG
GAGACCAGGAATGGAGGAGGAGCCGCATTTTTTGAGGTTTCGAATGTCAC
CGTGTTGAACGTGCTTTGTCAACATGTGCCCATCTGGAGTGTTTCGGGGA
GTTGTTATGTGCCGTGGGATGAGGGCGACGTGGAATGTGGATGGAGCATG
GAAAAAGAAGCAAGAGGAACTCCGACCGACTGTAAAGCGTTGATGACTTA
A
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protein sequence of rna2028

>rna2028-protein ID=rna2028-protein|Name=rna2028|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MCHLNGSRIFLIFVICCCLLNSNRSALAFVMPTARNIRHPLAGPLKASRL
FDNIFQGKKSSSSGLGERVKLGDLRVSPLGVGTWAWGNQFLWGYSPQKSD
SSLQETFDYVLSKGINWFDSADSYGTGRLEGRSEILLGQFLREHDYKLGS
SVKSAEDVFVATKIAPYPFRLGKGSIKAAMRASSRRLDRGRAGVDIGQLH
WAPPLGWQEKAYWAGLAELKQEGDIKAIGLSNYGPKKLREAAQTFKSEHG
ISLASNQVQLSLVSPLPLRSGLIETAADEGVRLIAYSPLGLGILTGRYNL
ERQQLPEGPRRLLFRELLPALTPVLGTMDQIVNERTRKKYGAVSEPVTCS
QVALNWCRAKGAIPIVGLKSLAQAREATAALDWCLSAGEVEALDRAVRSL
PKGRGETVQNIFQSEEKVRVMVSSEGSSHITAFGDSFNHRAQGKRKYVIR
LVLHPFP
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mRNA from alignment at CM002458.1:726773..728330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2028 ID=rna2028|Name=rna2028|organism=Nannochloropsis gaditana|type=mRNA|length=1558bp|location=Sequence derived from alignment at CM002458.1:726773..728330- (Nannochloropsis gaditana)
ATGTGTCACTTAAATGGCAGCAGAATCTTTTTGATTTTCGTAATATGCTG
TTGCCTCTTGAACAGCAACAGATCAGCTCTTGCCTTCGTAATGCCTACCG
CAAGAAACATAAGACATCCACTTGCGGGTCCCCTAAAGGCGAGTCGTCTA
TTCGATAATATTTTCCAAGGCAAGAAAAGCAGCAGTAGTGGCCTTGGTGA
GCGTGTGAAGCTGGGAGACCTTCGTGTAAGTCCGCTGGGTGTGGGCACGT
GGGCATGGGGAAATCAATTTCTATGGGGTTACTCTCCGCAAAAGTCCGAT
TCGTCTCTGCAAGAGACATTCGACTATGTATTGAGCAAAGGAATAAACTG
GTTTGACTCTGCAGATTCTTACGGGACTGGAAGGTTGGAAGGCAGGAGTG
AGATTTTGTTGGGTCAATTTTTAAGAGAGCACGACTATAAGCTCGGGTCA
AGCGTAAAGAGTGCTGAGGATGTCTTTGTGGCGACCAAAATTGCACCTTA
CCCCTTCCGCCTGGGTAAGGGATCCATCAAAGCTGCAATGCGCGCTTCAA
GCCGACGACTCGACAGGGGAAGAGCTGGAGTGGACATTGGCCAACTGCAT
TGGGCCCCGCCGTTAGGATGGCAAGAGAAAGCATACTGGGCGGGACTGGC
GGAGCTCAAACAGGAAGGGGATATAAAGGCTATTGGACTGAGCAACTACG
GGCCTAAAAAACTGCGGGAAGCGGCTCAGACTTTCAAGAGTGAGCACGGT
ATCAGCCTTGCATCAAACCAAGTTCAACTCTCTTTAGTCTCTCCACTACC
GCTGCGAAGCGGCTTGATCGAAACAGCTGCCGATGAGGGAGTGCGCCTTA
TCGCTTATAGTCCCCTAGGACTCGGTATACTGACGGGGCGCTACAATTTA
GAAAGGCAACAGCTGCCAGAGGGACCGCGCCGCCTACTTTTCAGAGAACT
TCTTCCTGCTCTGACGCCCGTGCTGGGTACCATGGATCAGATTGTAAACG
AGCGCACGCGCAAAAAGTATGGAGCAGTTAGTGAGCCTGTGACATGCTCC
CAGGTTGCACTAAATTGGTGTCGGGCGAAGGGCGCAATTCCAATCGTAGG
TTTAAAGAGCCTCGCTCAAGCTAGAGAAGCGACAGCTGCGCTTGATTGGT
GCTTGTCGGCAGGAGAGGTTGAGGCATTAGACCGAGCGGTGAGAAGTCTG
CCGAAGGGCAGAGGAGAGACGGTGCAGAACATTTTTCAATCGGAGTAAAA
TGATCGTCATTATCGGGCAAAGGGGGGGGGCGGGTCTCTGCAGATTATTT
GCTCCTTACTTTCTTGGGCTGGTGCTGGCACAAGTCGTAGATTTCACAGC
TACGAGGACGAGCGATCGTCTGCCATAAGTAGCGATACTGTCGGTCACAG
AGACGTCTCTGTATTCCGCGGCGGGTAGAGAAAAAGTGCGGGTAATGGTC
TCTTCCGAAGGATCATCACATATCACGGCATTCGGGGATTCCTTCAACCA
TCGAGCACAAGGCAAGCGTAAGTATGTGATTCGGCTTGTCCTCCATCCCT
TTCCGTAA
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Coding sequence (CDS) from alignment at CM002458.1:726773..728330-

>rna2028 ID=rna2028|Name=rna2028|organism=Nannochloropsis gaditana|type=CDS|length=2748bp|location=Sequence derived from alignment at CM002458.1:726773..728330- (Nannochloropsis gaditana)
AGAAAAAGTGCGGGTAATGGTCTCTTCCGAAGGATCATCACATATCACGG
CATTCGGGGATTCCTTCAACCATCGAGCACAAGGCAAGCGTAAGTATGTG
ATTCGGCTTGTCCTCCATCCCTTTCCGTAAATGTGTCACTTAAATGGCAG
CAGAATCTTTTTGATTTTCGTAATATGCTGTTGCCTCTTGAACAGCAACA
GATCAGCTCTTGCCTTCGTAATGCCTACCGCAAGAAACATAAGACATCCA
CTTGCGGGTCCCCTAAAGGCGAGTCGTCTATTCGATAATATTTTCCAAGG
CAAGAAAAGCAGCAGTAGTGGCCTTGGTGAGCGTGTGAAGCTGGGAGACC
TTCGTGTAAGTCCGCTGGGTGTGGGCACGTGGGCATGGGGAAATCAATTT
CTATGGGGTTACTCTCCGCAAAAGTCCGATTCGTCTCTGCAAGAGACATT
CGACTATGTATTGAGCAAAGGAATAAACTGGTTTGACTCTGCAGATTCTT
ACGGGACTGGAAGGTTGGAAGGCAGGAGTGAGATTTTGTTGGGTCAATTT
TTAAGAGAGCACGACTATAAGCTCGGGTCAAGCGTAAAGAGTGCTGAGGA
TGTCTTTGTGGCGACCAAAATTGCACCTTACCCCTTCCGCCTGGGTAAGG
GATCCATCAAAGCTGCAATGCGCGCTTCAAGCCGACGACTCGACAGGGGA
AGAGCTGGAGTGGACATTGGCCAACTGCATTGGGCCCCGCCGTTAGGATG
GCAAGAGAAAGCATACTGGGCGGGACTGGCGGAGCTCAAACAGGAAGGGG
ATATAAAGGCTATTGGACTGAGCAACTACGGGCCTAAAAAACTGCGGGAA
GCGGCTCAGACTTTCAAGAGTGAGCACGGTATCAGCCTTGCATCAAACCA
AGTTCAACTCTCTTTAGTCTCTCCACTACCGCTGCGAAGCGGCTTGATCG
AAACAGCTGCCGATGAGGGAGTGCGCCTTATCGCTTATAGTCCCCTAGGA
CTCGGTATACTGACGGGGCGCTACAATTTAGAAAGGCAACAGCTGCCAGA
GGGACCGCGCCGCCTACTTTTCAGAGAACTTCTTCCTGCTCTGACGCCCG
TGCTGGGTACCATGGATCAGATTGTAAACGAGCGCACGCGCAAAAAGTAT
GGAGCAGTTAGTGAGCCTGTGACATGCTCCCAGGTTGCACTAAATTGGTG
TCGGGCGAAGGGCGCAATTCCAATCGTAGGTTTAAAGAGCCTCGCTCAAG
CTAGAGAAGCGACAGCTGCGCTTGATTGGTGCTTGTCGGCAGGAGAGGTT
GAGGCATTAGACCGAGCGGTGAGAAGTCTGCCGAAGGGCAGAGGAGAGAC
GGTGCAGAACATTTTTCAATCGGAAGAAAAAGTGCGGGTAATGGTCTCTT
CCGAAGGATCATCACATATCACGGCATTCGGGGATTCCTTCAACCATCGA
GCACAAGGCAAGCGTAAGTATGTGATTCGGCTTGTCCTCCATCCCTTTCC
GTAAATGTGTCACTTAAATGGCAGCAGAATCTTTTTGATTTTCGTAATAT
GCTGTTGCCTCTTGAACAGCAACAGATCAGCTCTTGCCTTCGTAATGCCT
ACCGCAAGAAACATAAGACATCCACTTGCGGGTCCCCTAAAGGCGAGTCG
TCTATTCGATAATATTTTCCAAGGCAAGAAAAGCAGCAGTAGTGGCCTTG
GTGAGCGTGTGAAGCTGGGAGACCTTCGTGTAAGTCCGCTGGGTGTGGGC
ACGTGGGCATGGGGAAATCAATTTCTATGGGGTTACTCTCCGCAAAAGTC
CGATTCGTCTCTGCAAGAGACATTCGACTATGTATTGAGCAAAGGAATAA
ACTGGTTTGACTCTGCAGATTCTTACGGGACTGGAAGGTTGGAAGGCAGG
AGTGAGATTTTGTTGGGTCAATTTTTAAGAGAGCACGACTATAAGCTCGG
GTCAAGCGTAAAGAGTGCTGAGGATGTCTTTGTGGCGACCAAAATTGCAC
CTTACCCCTTCCGCCTGGGTAAGGGATCCATCAAAGCTGCAATGCGCGCT
TCAAGCCGACGACTCGACAGGGGAAGAGCTGGAGTGGACATTGGCCAACT
GCATTGGGCCCCGCCGTTAGGATGGCAAGAGAAAGCATACTGGGCGGGAC
TGGCGGAGCTCAAACAGGAAGGGGATATAAAGGCTATTGGACTGAGCAAC
TACGGGCCTAAAAAACTGCGGGAAGCGGCTCAGACTTTCAAGAGTGAGCA
CGGTATCAGCCTTGCATCAAACCAAGTTCAACTCTCTTTAGTCTCTCCAC
TACCGCTGCGAAGCGGCTTGATCGAAACAGCTGCCGATGAGGGAGTGCGC
CTTATCGCTTATAGTCCCCTAGGACTCGGTATACTGACGGGGCGCTACAA
TTTAGAAAGGCAACAGCTGCCAGAGGGACCGCGCCGCCTACTTTTCAGAG
AACTTCTTCCTGCTCTGACGCCCGTGCTGGGTACCATGGATCAGATTGTA
AACGAGCGCACGCGCAAAAAGTATGGAGCAGTTAGTGAGCCTGTGACATG
CTCCCAGGTTGCACTAAATTGGTGTCGGGCGAAGGGCGCAATTCCAATCG
TAGGTTTAAAGAGCCTCGCTCAAGCTAGAGAAGCGACAGCTGCGCTTGAT
TGGTGCTTGTCGGCAGGAGAGGTTGAGGCATTAGACCGAGCGGTGAGAAG
TCTGCCGAAGGGCAGAGGAGAGACGGTGCAGAACATTTTTCAATCGGA
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Synonyms
Publications