rna2026, rna2026 (mRNA) Nannochloropsis gaditana

Overview
Namerna2026
Unique Namerna2026
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length567
Alignment locationCM002458.1:723637..724420 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100177g6.1009.mrna
Orig protein idgnl|cribi|Naga_100177g6.1009
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:723637..724420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g6gene1937Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2026rna2026-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28652.1cds2018Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2026 ID=rna2026|Name=rna2026|organism=Nannochloropsis gaditana|type=mRNA|length=567bp
ATGTGGCCGACCGTCGATTGTAAATGCCTTCGTACATGTTGTGGGGCTAA
AGAAGCCGTTAATCATTCCTACTTCCTGCAGCAGCGGCGTACAAGCCGTC
TTATCAAAGCTATGTTTGGACAGAAAAAATTGACCCCCAAAGAGCAGCTC
CGGGAGACAAAAAAGGAGATCAGACACAATGAACGGGACATGGACCGAGA
GCTGCAGAATTTGGCAAGAGAAGAAGCAAAGCTCATCCATGACATTAAAA
AAATGGCTGCAAACAATCAGCATGGACCCTTGAAAGTCATGGCGAAGAAC
CTGGTACAACTGCGGGCGCAAAAGGACAAGCTCATCACAATGAAGGCTAC
CATGACAGGTGTAGGGTACAAGGCATCATTAATGCATTCGCAGGCGGCTG
TCGGCCAGGCAATGAGCAGGATGACCGGGGTGATGGGTGATATGAACGAA
ATGATGGACGCTACAAAGACAAGCAAGGTTATGACAGAGTTTGCGCGACA
GAACGAGTACATGAATGTAAAGGAGGATTTGCTGGACGACGCTTTGATGG
ATGCGTCAAGGGTGTGA
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protein sequence of rna2026

>rna2026-protein ID=rna2026-protein|Name=rna2026|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MPQRGMKRDRKLGKTLCNASRAALSSMLSLSTASLSLPTGTSAILLPSSS
PISSSTWLTTDSASSSTPSPSNCNIKIVDRRLKSRIDVVTSCTLKDASCI
MNLSFATCIEIFYIFNKELEFKCPDTDIKSALLK
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mRNA from alignment at CM002458.1:723637..724420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2026 ID=rna2026|Name=rna2026|organism=Nannochloropsis gaditana|type=mRNA|length=784bp|location=Sequence derived from alignment at CM002458.1:723637..724420- (Nannochloropsis gaditana)
ATGCCTCAGCGGGGCATGAAACGCGATCGTACAAGGGCTTTTTGGTGAGC
ACGCTGTCAGTGATTGGCGCAACACTGAAGATACTCGCTCCCGGCCCGGG
TCTCTCGTGTCGTCTCTCCCTCAGAGGAAGGGGAAGACGGACGCACGCGA
GTTTTCCTGACACTTTCTCACCCAAAAATCAGCAAAGGATTGGGAAGAAA
AATATAAACGTTTCAACGGTCTTATAAATTCAGCAATGATGAATTCTAAA
GATGAGTGGTGTTCGCCACCGATGCAATCCCTGGCAATCTTCTTGACATT
TCAAACCTTTATCAGTACCTGATATATTTCTTCCATTACCTTTAAGGCAA
GCTTGGCAAAACCTTATGTAATGCCTCCAGAGCAGCCTTATCTTCAATGC
TCTCCTTGTCTACAGCATCTCTAAGCTTGCCAACAGGCACATCGGCCATT
TTACTGCCAAGTTCGAGCCCAATCTCCTCCAGCACTTGGTTGACGACGGA
CTCTGCTTCTTCTTCCACTCCATCTCCGTCGAACTGTAATATTAAAATTG
TTGATCGTAGATTGAAATCCCGTATGTGAGTAATAGGGTAGACAGATTAG
AGTAGCCACCCTTCAAGACATGCATCATCCTTGAAGTGATGTCGTTACAT
CTTGCACCCTCAAAGATGCTTCATGCATAATGAACTTGAGTTTTGCGACG
TGTATCGAAATATTCTACATCTTCAATAAAGAATTGGAATTTAAATGTCC
TGACACTGATATCAAGTCTGCACTACTAAAATGA
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Coding sequence (CDS) from alignment at CM002458.1:723637..724420-

>rna2026 ID=rna2026|Name=rna2026|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002458.1:723637..724420- (Nannochloropsis gaditana)
TGATGTCGTTACATCTTGCACCCTCAAAGATGCTTCATGCATAATGAACT
TGAGTTTTGCGACGTGTATCGAAATATTCTACATCTTCAATAAAGAATTG
GAATTTAAATGTCCTGACACTGATATCAAGTCTGCACTACTAAAATGAGC
AAGCTTGGCAAAACCTTATGTAATGCCTCCAGAGCAGCCTTATCTTCAAT
GCTCTCCTTGTCTACAGCATCTCTAAGCTTGCCAACAGGCACATCGGCCA
TTTTACTGCCAAGTTCGAGCCCAATCTCCTCCAGCACTTGGTTGACGACG
GACTCTGCTTCTTCTTCCACTCCATCTCCGTCGAACTGTAATATTAAAAT
TGTTGATCGTAGATTGAAATCCCGTATATGCCTCAGCGGGGCATGAAACG
CGATCTGATGTCGTTACATCTTGCACCCTCAAAGATGCTTCATGCATAAT
GAACTTGAGTTTTGCGACGTGTATCGAAATATTCTACATCTTCAATAAAG
AATTGGAATTTAAATGTCCTGACACTGATATCAAGTCTGCACTACTAAAA
TGAGCAAGCTTGGCAAAACCTTATGTAATGCCTCCAGAGCAGCCTTATCT
TCAATGCTCTCCTTGTCTACAGCATCTCTAAGCTTGCCAACAGGCACATC
GGCCATTTTACTGCCAAGTTCGAGCCCAATCTCCTCCAGCACTTGGTTGA
CGACGGACTCTGCTTCTTCTTCCACTCCATCTCCGTCGAACTGTAATATT
AAAATTGTTGATCGTAGATTGAAATCCCGTATATGCCTCAGCGGGGCATG
AAACGCGATCTGATGTCGTTACATCTTGCACCCTCAAAGATGCTTCATGC
ATAATGAACTTGAGTTTTGCGACGTGTATCGAAATATTCTACATCTTCAA
TAAAGAATTGGAATTTAAATGTCCTGACACTGATATCAAGTCTGCACTAC
TAAAATGAGCAAGCTTGGCAAAACCTTATGTAATGCCTCCAGAGCAGCCT
TATCTTCAATGCTCTCCTTGTCTACAGCATCTCTAAGCTTGCCAACAGGC
ACATCGGCCATTTTACTGCCAAGTTCGAGCCCAATCTCCTCCAGCACTTG
GTTGACGACGGACTCTGCTTCTTCTTCCACTCCATCTCCGTCGAACTGTA
ATATTAAAATTGTTGATCGTAGATTGAAATCCCGTATATGCCTCAGCGGG
GCATGAAACGCGATC
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Synonyms
Publications