rna2020, rna2020 (mRNA) Nannochloropsis gaditana

Overview
Namerna2020
Unique Namerna2020
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2209
Alignment locationCM002458.1:716082..716780 +

Link to JBrowse

Properties
Property NameValue
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_102247g1.10366.mrna
Orig protein idgnl|cribi|Naga_102247g1.10366
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:716082..716780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102247g1gene1931Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2020rna2020-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28661.1cds2012Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2020 ID=rna2020|Name=rna2020|organism=Nannochloropsis gaditana|type=mRNA|length=2209bp
AAAGGGCAATACCTAGATTTTTGTCATGATGGAGTTCTTCCGAGGGTAGA
CGGGCACACCCAGTCTGATCCGGGCAACGAGCCCTTTCCCTACAAAATCC
CAGAAGAATCATGAATGAACCACCGGCGTTGGCCAATCTGCGCGACAATA
TCACGCCCTTATTTACAAGTAGCAGCAGCAGCAACAACAGCAGCAGCGGT
TTGTGGTCCTACGGCGGAAGTGTTGGTGGAGACGGTACCACTCAGGACGG
TGGCGGCGGTTGCAGTAGCGCGGACGCGCAGCCCCAAGAGCAAGCTCCAT
TTCACAATATCAGCCCATCATTTAGTACACCTCCTTGGTCGAACGAGTGG
GGAGACAGTCGAGAAGGTAAAAGCTCAAGCTCTGCGGGCATGGGACATGG
AAATAGCGCCTCTGTCCTAAACCACCTCCACCCTCCGGTCTCTCCACCGC
CATGCGCATTAAAGCTCCGGCCTCGGGACTCCGCATCCTCCAATTGTAGC
ATGAATGAATTTTATTGCCGCACGGAGGGAGCGGCTGCAGCTGCAGCAGC
TGCAGCAGGTGCGGTCGTGAACCGCTTTGTGGTGCCGGGCACTGAAGCTT
GTCTTACTTCAGGCTCCCCCTCGGATCTCTCTTCTCCGGGCCCCGACCCG
CGGCACTCGCGCAAGCAAGACTGGGGTCCTGGTGCTTTGGAGATGGGTTC
TCGCATGTCCTCCCCGGGGGGCGGCTCTCCCTTATTCAGGTCATCGAGTC
CCACCGCTTCCCACGGAGGGCGTTCGCCTGTGGTCGAGCTGGAGTGCTCC
CTGTCCGGCCTCGTGTTGGACCGTGGAGGGGAGCGAGCGGGCTCAGAGAG
CGCTTGGGCCCTTCCGGGACGGTCCCCAGACAATGTGAAGTACCAGCAGC
AACACCAGCACGATCAGCAGCAGCACCACCACGAGCGCCGAGGAGACCAG
CCCTACCCGGCGCCACAGCAGCAACAGCCGATGTCTCGACAGCTTCGAGG
TGCGCATGGACTGGGAGGCTCCGCATTTGACGAACGATCTGCCTTCAATA
GCCAGCTGCACGTGGGCGGCGTGCGGGGACAGGGGAATCGCCCCTACGCC
TCCAATCAGCCCCAAAAACCACCGGCTCCGCAACCTCACCAGGCGCTCAT
GATCCAGATTCCGACCTTGTCCTCCGCCTTGGGTTCGGGCCCCAGCAGCG
CGCCTGCGGCCGGCATGAGCAACCGGAGCTACTTGTTCGCGGAAGGCGGC
AGTGAAGGCGGGCGTAACCGGGGCAGCTTTTCCCCTACGCTGCACAACCA
GGCTTCCCCACGTCCTCCGGGAAGCGGCAATTTGGGCAACATGGGCATGG
GAATGGCGGCTAGAAACAGCTTCCACAACCAGTCGCCACGACAGTACCAC
TACCAGGCTAACCAGTCCCCTTACATGCATGGTGCCGCCGGGCGCAGCGG
CAGCCTCGGCCGCAGTGGCGTGTCAGGCGCGGCGTACGGCGGATCTCCCC
CGCACTTGATGGCCACCGCACGCCGTGGCGGTGGAGGAAACCGTGGTATG
GGCGGAGGGGCGGGCGGAGGTGGGATGTACTCGCCCACGGGGTCGAGTCC
GATGGGGAGCCCGACGGGAAGCGGTGGGGACGAGTATTACGGGGGCGGAG
GATCTCCACGCTGGATGGGCCACGGGGGACACGGCGGGGGCGGTGCGATG
GATGTGGAGGCAAAGAGGTGCAGCAACGCGATCAAAAAGCTGTGCAGCGC
CGGGAACGTGACGGAGGTGTTCGCGGTGCTGGAGGACATGCTGGGCCGTG
GACTGGTCCCGGATTTGAAGACGGTCAAAACGATCATGCGCACCTGCGTG
AAGAAGCTTGCGTGGCGGAGGGCGGTGCAGTTGTTGCATATGGAGGGGCT
GCCGCTGGACGTGGTCATCTTCACGATGGCCATCAACACCTGCGGCAAGG
CGGGGGAGTGGGAACAAGGCCTGCGAGTCCTCCGGGAAATGGACTCGGAC
GATGCGAAGGCTCGCGGGATCTTGCCCAACGAGGTGAGCTACGGTACTGC
AATCTCCGCGTGTGGCAAGGCGGGTCGTTGGGAGCTGGCGCTCTCGCTTT
TGAACGAGGTCAAGGGCCGGGGGTTGCTCTTGAACGACGTCTGCTACGGC
GGCGCCATCGACGCTTGTGGACGCGCGGGCCAGTGGCAGGAGGCTCTCAA
ACTTCTCAG
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protein sequence of rna2020

>rna2020-protein ID=rna2020-protein|Name=rna2020|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MRDGGLTPDELNYNSAISACGKAAQWAHAIRLLREMAVQGLCPDVRVALL
AEMRDVGLVPNEVCYHSAVTACSEAGRWNEALFVLSEMVKQGLKPDAISY
NAAVEACAKSAKWDALIILLQETSRDPDVTLVEAVYNNAIMTCSKYGNWE
LAATVLQEMDGS
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mRNA from alignment at CM002458.1:716082..716780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2020 ID=rna2020|Name=rna2020|organism=Nannochloropsis gaditana|type=mRNA|length=699bp|location=Sequence derived from alignment at CM002458.1:716082..716780+ (Nannochloropsis gaditana)
ATGCGGGATGGTGGTCTGACTCCTGACGAACTCAACTACAACTCCGCCAT
TTCGGCCTGTGGGAAGGCTGCCCAGTGGGCCCATGCCATTCGCCTGCTCC
GAGAGATGGCCGTACAGGGGCTCTGCCCCGACGTGGTGTCGTACGGCGCG
GCCATCGACGCCTGTCGAAAGGCTGGCAAGTACGACAGAGGGTGGCGCTC
TTGGCGGAGATGCGGGACGTGGGCCTGGTGCCTAACGAGGTCTGCTACCA
CTCGGCGGTCACAGCCTGCTCAGAGGCCGGGCGGTGGAACGAGGCCCTTT
TTGTGCTCTCGGAGATGGTCAAGCAGGGTCTCAAGCCGGACGCGATCAGC
TACAATGCTGCCGTGGAGGCCTGCGCCAAGTCTGCCAAGTGGGACGCCCT
GATCATCCTCCTGCAAGAAACCAGCcgcgacccggatgtgacgctggtgg
aggccgtcTACAACAACGCGATCATGACATGCTCTAAGTACGGGAACTGG
GAGTTGGCAGCTACGGTGCTGCAGGAGATGGAGTATCTgggcgacggggg
aggggccaggggcgcGACGGGGGCCCACTGCAGCCATCCGGGCCTTTCGC
CCACCTCGGCTTCCTACTCGGCCGTGATCGATGCCTGCGCGAAAGCTTTG
GTGAGTACGGGCGCGTCTGCTACGAGTGGGCTACCCCAGTGGGAGCTAA
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Coding sequence (CDS) from alignment at CM002458.1:716082..716780+

>rna2020 ID=rna2020|Name=rna2020|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002458.1:716082..716780+ (Nannochloropsis gaditana)
ATGCGGGATGGTGGTCTGACTCCTGACGAACTCAACTACAACTCCGCCAT
TTCGGCCTGTGGGAAGGCTGCCCAGTGGGCCCATGCCATTCGCCTGCTCC
GAGAGATGGCCGTACAGGGGCTCTGCCCCGACGTGAGGGTGGCGCTCTTG
GCGGAGATGCGGGACGTGGGCCTGGTGCCTAACGAGGTCTGCTACCACTC
GGCGGTCACAGCCTGCTCAGAGGCCGGGCGGTGGAACGAGGCCCTTTTTG
TGCTCTCGGAGATGGTCAAGCAGGGTCTCAAGCCGGACGCGATCAGCTAC
AATGCTGCCGTGGAGGCCTGCGCCAAGTCTGCCAAGTGGGACGCCCTGAT
CATCCTCCTGCAAGAAACCAGCcgcgacccggatgtgacgctggtggagg
ccgtcTACAACAACGCGATCATGACATGCTCTAAGTACGGGAACTGGGAG
TTGGCAGCTACGGTGCTGCAGGAGATGGATGGGAGCTAAATGCGGGATGG
TGGTCTGACTCCTGACGAACTCAACTACAACTCCGCCATTTCGGCCTGTG
GGAAGGCTGCCCAGTGGGCCCATGCCATTCGCCTGCTCCGAGAGATGGCC
GTACAGGGGCTCTGCCCCGACGTGAGGGTGGCGCTCTTGGCGGAGATGCG
GGACGTGGGCCTGGTGCCTAACGAGGTCTGCTACCACTCGGCGGTCACAG
CCTGCTCAGAGGCCGGGCGGTGGAACGAGGCCCTTTTTGTGCTCTCGGAG
ATGGTCAAGCAGGGTCTCAAGCCGGACGCGATCAGCTACAATGCTGCCGT
GGAGGCCTGCGCCAAGTCTGCCAAGTGGGACGCCCTGATCATCCTCCTGC
AAGAAACCAGCcgcgacccggatgtgacgctggtggaggccgtcTACAAC
AACGCGATCATGACATGCTCTAAGTACGGGAACTGGGAGTTGGCAGCTAC
GGTGCTGCAGGAGATGGATGGGAGCTAAATGCGGGATGGTGGTCTGACTC
CTGACGAACTCAACTACAACTCCGCCATTTCGGCCTGTGGGAAGGCTGCC
CAGTGGGCCCATGCCATTCGCCTGCTCCGAGAGATGGCCGTACAGGGGCT
CTGCCCCGACGTGAGGGTGGCGCTCTTGGCGGAGATGCGGGACGTGGGCC
TGGTGCCTAACGAGGTCTGCTACCACTCGGCGGTCACAGCCTGCTCAGAG
GCCGGGCGGTGGAACGAGGCCCTTTTTGTGCTCTCGGAGATGGTCAAGCA
GGGTCTCAAGCCGGACGCGATCAGCTACAATGCTGCCGTGGAGGCCTGCG
CCAAGTCTGCCAAGTGGGACGCCCTGATCATCCTCCTGCAAGAAACCAGC
cgcgacccggatgtgacgctggtggaggccgtcTACAACAACGCGATCAT
GACATGCTCTAAGTACGGGAACTGGGAGTTGGCAGCTACGGTGCTGCAGG
AGATGGATGGGAGCTAA
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Synonyms
Publications