rna202, rna202 (mRNA) Nannochloropsis gaditana

Overview
Namerna202
Unique Namerna202
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1566
Alignment locationCM002455.1:523577..524969 -

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Properties
Property NameValue
Productmetallo-beta-lactamase family protein
Orig transcript idgnl|cribi|Naga_100013g15.9808.mrna
Orig protein idgnl|cribi|Naga_100013g15.9808
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:523577..524969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g15gene193Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30520.1cds202Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna202rna202-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna202 ID=rna202|Name=rna202|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp
ATGGTATCACTATTCGCGACTTCCTCGAAGGTACTTAGAAAAGCAAGCAA
AAAGCGGCCCCGGTCAGTAGTGGAGGAGGAAGCTAAGGTTGGCACGGCGC
CTGCGGTGGGGGGCTCCCAGCTTAAAGGCGTAGGACGAGAGTCAGTGCAG
GAGGCGGGCGTGGACGCGGGCTCGGACTCATTGTCGTCAAGCTGTTGGAC
ACAACTGGGACTGGCCCCTTGGATCCAAGGAGCATGTAATGCTATGGGCT
TTAAACGCCCGACACCGGTGCAAGAACAGTGCATTCCTTCCATTTTGCAA
GGGAGGGACGTGATGGGATGTGCGGAAACCGGTTCGGGAAAGACGGCAGC
CTTTGCCCTCCCCATGCTGCACCGCCTGTCAGAAGACCCTTACGGGGTGT
TTGGGCTGGTCCTGACCCCCACGCGGGAGCTCGCTATTCAGATCGCAGAG
CAATTCCAGGCACTGGGCGCGCCGCTAGGCCTGAGGCACTGCGTGGTCAT
AGGCGGGGAGAGCATGGTCCAACAAGCGGTAGAGCTGGCTCGGCGCCCTC
ATGTAGTCGTGGCGACACCGGGACGGCTGTGGGATCATCTTCGGGGCGCG
GCCCCACCTGATCTGAGCAAAGCCACGTTCCTCGTGCTGGATGAGGCGGA
CCGCCTGTTCTGCGACGGCTTCGAGCAGCACTTGGCCGGGATACTGGCGG
CCATGCGGCATCCTCGCCGCCAGACGCTCCTCTTCAGCGCGACCATGACC
AATGCCTTGAAGGACTTGAAGCGGCTGACCCGCGTGCAGCCCGTGCTCTT
CGACCTGACGCGGGCGCGGGCTTTGCCGGCCTCTCTGCAGGAGGAATACC
TCTTCGTCCCCGCCCAGGTCAAGATGTGCTACTTGATCCGGCTCCTTCAG
AAGCTTTTGCTCGGCGTTGGCACAGAGACGGACAGCGTGCGGGGAAGACG
GGGTGCGAAGGGCGCCGGGGACGAGAGTGGTACCGCGGGCCCTGTGAAAT
CTGCCATGGTCTTCGTAGGCACTTGCCAACGCTGTCAGGAGGTTGCCGAG
GTACTGCTGGAGGCAGGGCTCACGGCCGTCTCCCTCCACTCAGTCCTCAG
CCAGAAACGGCGTCTGGCGGCCCTGGGCAAGTTCAAGAGCTCCTTGGTGC
GTGTGCTGGTGAGCACGGACGTGGCGAGTCGGGGCCTCGACATCCCCGAC
GTGGGCCTGGTCCTCAACTACGACCTCCCGCGGCTCTCGACCGACTACAT
CCACCGGGTCGGGCGCACGGCCAGGGCGGGACGGTACGGGCGGGCGGTGT
CCATGGTCACCCAGTACGATGTGGCCTTGTTGCAAGGGGTGGAGGCCGTA
ACGGGGCGGAAAATGCCGGCGTGCGAGGAGGTGACGGAGGAGGAGGTGGT
GAGGCTCTTGAACCCCGTGGCCAAGGCAACGAGGGCGGCGCGGATGAGGC
TGATGGAGGTGGGCTTTGACGAGCAGGTCCATGAGCATTTGGAGCGGAAG
AAGCGGGGCAAGAAGGACAGGCAACGAAAGAGGAGGAGGGCGGGCAAGAA
GGAAGGGGGGGATTGA
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protein sequence of rna202

>rna202-protein ID=rna202-protein|Name=rna202|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MASDLSHARRKRRKCSHFFFSFLFLANFSVTSAFHTMLPSMHRPVKETRR
RTLMRARAKEESLGNAVDANLYVDRSCSGCGTCRSICPGVFGDLGLQSVV
EREPLDKNETRAAYRAMVTCPMGAIRLRKPDPLVKEVVMHDFPTPLDPVA
LPGVYFLGYHNRESMGVTPYLIVRDNGEGNIMIDAPRFNGRLAQQIESLG
GVRYMIVTHEGSAPHHDLWHAFFPSSERVVHRMDVTREMRGQVEAILQGK
GPWRIDDDVKIVALPGYSPGSIGVLFHPSSVSSNGIEEDSKWGKDGERNG
ILFSGRTLGWSARLNRLDGFAQFSRGSLRKQAASIKGLGKEDFAWILPAE
GLKFHLPGGGNAETRERLLAEAAELFLARGRVGGLNV
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mRNA from alignment at CM002455.1:523577..524969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna202 ID=rna202|Name=rna202|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002455.1:523577..524969- (Nannochloropsis gaditana)
GGCTGGATATGGCCCCGTGACAAACTATGTGACCGGAGCTATCCATTCCT
CGGGCCCTCCTTCCAACCCTGCGCCCCTCCTCTCGCCTGGACCTCACGGC
ATAAGGAACAGTCATCTTCAACTTTAGACAACTTACCCCCCACATTCCAC
GTCCACTACATACGTCTCAGGAATTATGGCGTCGGACTTATCGCACGCAC
GGAGGAAGAGAAGAAAATGCAGTCACTTCTTTTTTTCATTCCTTTTTCTT
GCAAACTTCTCCGTCACCTCGGCCTTCCACACCATGCTCCCATCCATGCA
CCGACCCGTGAAGGAAACGCGCCGCCGCACGCTCATGCGCGCGCGGGCGA
AGGAAGAAAGCCTGGGTAATGCAGTGGACGCGAACTTGTACGTTGACCGC
AGTTGCTCGGGTTGTGGAACATGTCGGAGCATCTGTCCTGGTGTCTTTGG
TGACCTAGGGCTGCAATCGGTAGTGGAGAGAGAGCCTTTGGATAAAAACG
AGACACGGGCTGCGTACCGTGCAATGGTCACATGTCCTATGGGTGCGATC
AGATTGCGTAAGCCAGATCCTCTTGTGAAAGAGGTGGTGATGCACGACTT
CCCCACCCCTCTGGATCCTGTAGCGCTTCCCGGAGTGTATTTTCTGGGAT
ATCACAACCGGGAGAGCATGGGTGTAACGCCGTACTTAATCGTGCGGGAC
AATGGCGAAGGAAACATAATGATAGATGCCCCACGATTCAATGGACGACT
GGCACAGCAGATCGAGTCTTTGGGGGGAGTCCGATACATGATAGTGACAC
ACGAAGGCTCTGCGCCCCATCACGACCTGTGGCACGCCTTCTTCCCCTCG
TCTGAACGAGTCGTGCACCGGATGGACGTGACGCGAGAGATGAGGGGGCA
GGTGGAGGCTATCCTTCAAGGAAAGGGACCTTGGCGTATCGACGACGACG
TGAAGATCGTGGCGCTCCCCGGCTACTCTCCTGGCTCTATCGGCGTCCTT
TTCCATCCCTCGTCAGTGAGCAGCAATGGAATAGAGGAGGATTCGAAATG
GGGAAAGGATGGAGAGCGAAATGGCATCCTCTTCAGCGGGCGGACCCTGG
GGTGGTCTGCCCGCTTGAATCGCTTGGATGGCTTCGCGCAATTTTCTCGC
GGAAGCTTGAGGAAACAAGCAGCGAGTATCAAGGGGCTGGGCAAGGAAGA
CTTTGCGTGGATACTTCCCGCGGAGGGGCTCAAATTCCATCTGCCTGGAG
GAGGGAATGCGGAGACGAGAGAACGTCTCTTGGCGGAGGCGGCCGAGTTG
TTTCTGGCCCGGGGCCGCGTGGGCGGGCTAAATGTATAAAGCAAGCATGT
CAATTAGACCCCGCGGAGGTGCATGTCGTGTCGATAATCTTCT
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Coding sequence (CDS) from alignment at CM002455.1:523577..524969-

>rna202 ID=rna202|Name=rna202|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002455.1:523577..524969- (Nannochloropsis gaditana)
ATGGCGTCGGACTTATCGCACGCACGGAGGAAGAGAAGAAAATGCAGTCA
CTTCTTTTTTTCATTCCTTTTTCTTGCAAACTTCTCCGTCACCTCGGCCT
TCCACACCATGCTCCCATCCATGCACCGACCCGTGAAGGAAACGCGCCGC
CGCACGCTCATGCGCGCGCGGGCGAAGGAAGAAAGCCTGGGTAATGCAGT
GGACGCGAACTTGTACGTTGACCGCAGTTGCTCGGGTTGTGGAACATGTC
GGAGCATCTGTCCTGGTGTCTTTGGTGACCTAGGGCTGCAATCGGTAGTG
GAGAGAGAGCCTTTGGATAAAAACGAGACACGGGCTGCGTACCGTGCAAT
GGTCACATGTCCTATGGGTGCGATCAGATTGCGTAAGCCAGATCCTCTTG
TGAAAGAGGTGGTGATGCACGACTTCCCCACCCCTCTGGATCCTGTAGCG
CTTCCCGGAGTGTATTTTCTGGGATATCACAACCGGGAGAGCATGGGTGT
AACGCCGTACTTAATCGTGCGGGACAATGGCGAAGGAAACATAATGATAG
ATGCCCCACGATTCAATGGACGACTGGCACAGCAGATCGAGTCTTTGGGG
GGAGTCCGATACATGATAGTGACACACGAAGGCTCTGCGCCCCATCACGA
CCTGTGGCACGCCTTCTTCCCCTCGTCTGAACGAGTCGTGCACCGGATGG
ACGTGACGCGAGAGATGAGGGGGCAGGTGGAGGCTATCCTTCAAGGAAAG
GGACCTTGGCGTATCGACGACGACGTGAAGATCGTGGCGCTCCCCGGCTA
CTCTCCTGGCTCTATCGGCGTCCTTTTCCATCCCTCGTCAGTGAGCAGCA
ATGGAATAGAGGAGGATTCGAAATGGGGAAAGGATGGAGAGCGAAATGGC
ATCCTCTTCAGCGGGCGGACCCTGGGGTGGTCTGCCCGCTTGAATCGCTT
GGATGGCTTCGCGCAATTTTCTCGCGGAAGCTTGAGGAAACAAGCAGCGA
GTATCAAGGGGCTGGGCAAGGAAGACTTTGCGTGGATACTTCCCGCGGAG
GGGCTCAAATTCCATCTGCCTGGAGGAGGGAATGCGGAGACGAGAGAACG
TCTCTTGGCGGAGGCGGCCGAGTTGTTTCTGGCCCGGGGCCGCGTGGGCG
GGCTAAATGTATAA
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Synonyms
Publications