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Properties
| Property Name | Value |
|---|
| Product | Pentatricopeptide repeat containing protein |
| Orig transcript id | gnl|cribi|Naga_100002g1.4882.mrna |
| Orig protein id | gnl|cribi|Naga_100002g1.4882 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:713754..715962 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2019 ID=rna2019|Name=rna2019|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp
CCGGCCCTGCATCGTGCCGGACTTACCGCAATGCACGGCGTTGAGTGCAT
GCCTTTTCCGGGAGGTTGGCACTGGCTATGTGGTCAAATTGCCACGTATG
TTACACTCCGCCGGGCATATGCCTAGGTGAAGGTCAACAAGAAAGATACT
GCAGCAGGCAGCCTCTCCCTGCGCGTCAGGAGGCACAGGGGGATGGCATG
TTCCGATGCTGGCTTGACGCATTACTTGCACGCCCTTTTCTAAACTTTGG
TCTTTGGGCAGCTTTATGAGCGGCCTGTACGAGGCTTGCAGTTCGCGTTG
TAATTGACAGCATTATTTTGTAGTACATCGGTTCGAGCCCGAAGCCTGCT
CAGCGGCAGCACCCGAAGCAGAAACTCTCATCGTACATAGATGCATTTCA
CTACCTTACAAATGAGTGTTTTTGATGTAGTAGCTTTTTGGAAGACTTGA
CGCGTGTATTTGACCACAACGAAAGATGAAAGACCTCTTACTTGCCATCA
ACATAACCACACAATTGCCTAGCACTTCCGCTTTTCGGAAATCATGCGCG
TTGCTGTCGCTCTACTCGGCTCATTGGCCCTTGGTGAGGCTTATTTCAGG
CCCCTGGCACCCCGTGCTCCCCTCTCTTCTTTTTCCAAGTGCTCAGTCGC
TCAGTCCTTGAGTCACGGTGGCATCGGCGGGAATGGGGGCAACGACGACG
TGTGGGGAGGGTGGAATGGGGGAGGATGGAATGGGGGAGATGACGAGCAC
GGAGGCGCGCACTACGGAGGCGGATTGGGCTTGTTGTGGGACAAGTATAA
TGAGGTTCTGGACACGAACCCTTTGCCGACCAAGGCCGTCACCTCGCTGG
TAGGCTTCACCATTGGAGACTTGCTGGCGCAGAGCTTCCTGGGCGAGAAG
GGCGCTCCGCTGGACGTCAAGCGACTGCTGCGGCTGGCATCTTTTGGTCT
GGCAGTGCACGGGCCCGTGGGTCACTTCTTCTACGGGGCCCTGGACGAGA
AATTCCCCAAGAAGGACGCGCAGACGGTGGCGATCAAGGTGCTCATCGAC
CAGGTCCTGTGGGCGCCTGTCTTCACCGTCATCTTCTTCGCCTGGATCGA
GGTGCTGCAGGGTGCAGGCTTGCAGAAAATCAAACAGAAGATCAATCAGG
ACCTCGTCCGTGGCGTGACGGCCTCCTGGAAAGTTTGGCCGTTGGTGCAC
GTCATTAACTTCCGCTTCATTCCTCCCCAGCAGCGATTGTTGTACATTAA
CACCATCCAAATTGGCTACAATGTCTTCCTCTCCATGCTTGCATCTCGCA
AAGCCTAGAACCATCCAATACCGATTCGCAGATCCCTCTAAGCATTTCAA
GTGGCATCTCGAAGTACTGATGGAAAATTGCGCTGACATCACGAGATCGA
GCTGCAAAGTGGGCGAGAGTTGATCGCTTGTCGTATGTCTTTTAAGTGAC
GAGGTTGGTAGGACTGCACGTATGAAGCAAAAATGCCTTGAGGAATTCCC
GTCGTTTATTAGATACAGAATTTCGAAAGCTTAAGTCATATGGGATAATC
ATAATCTGCTCGCAGGGTTTACGAGGGCAACATCAAACGGCGGATAAAGG
GTGGCGCCAGACCTCTTCCTCTCTCAGGAACCATCACAGTCACCTCACAA
TAAAGGCACAAAGAAAATAAAAAGAACTCGCATGACTTTTTCGAGTACGA
CAT back to topprotein sequence of rna2019 >rna2019-protein ID=rna2019-protein|Name=rna2019|organism=Nannochloropsis gaditana|type=polypeptide|length=699bp
MNEPPALANLRDNITPLFTSSSSSNNSSSGLWSYGGSVGGDGTTQDGGGG
CSSADAQPQEQAPFHNISPSFSTPPWSNEWGDSREGKSSSSAGMGHGNSA
SVLNHLHPPVSPPPCALKLRPRDSASSNCSMNEFYCRTEGAAAAAAAAAG
AVVNRFVVPGTEACLTSGSPSDLSSPGPDPRHSRKQDWGPGALEMGSRMS
SPGGGSPLFRSSSPTASHGGRSPVVELECSLSGLVLDRGGERAGSESAWA
LPGRSPDNVKYQQQHQHDQQQHHHERRGDQPYPAPQQQQPMSRQLRGAHG
LGGSAFDERSAFNSQLHVGGVRGQGNRPYASNQPQKPPAPQPHQALMIQI
PTLSSALGSGPSSAPAAGMSNRSYLFAEGGSEGGRNRGSFSPTLHNQASP
RPPGSGNLGNMGMGMAARNSFHNQSPRQYHYQANQSPYMHGAAGRSGSLG
RSGVSGAAYGGSPPHLMATARRGGGGNRGMGGGAGGGGMYSPTGSSPMGS
PTGSGGDEYYGGGGSPRWMGHGGHGGGGAMDVEAKRCSNAIKKLCSAGNV
TEVFAVLEDMLGRGLVPDLKTVKTIMRTCVKKLAWRRAVQLLHMEGLPLD
VVIFTMAINTCGKAGEWEQGLRVLREMDSDDAKARGILPNEVSYGTAISA
CGKAGRWELALSLLNEVKGRGLLLNDVCYGGAIDACGRAGQWQEALKLL back to topmRNA from alignment at CM002458.1:713754..715962+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2019 ID=rna2019|Name=rna2019|organism=Nannochloropsis gaditana|type=mRNA|length=2209bp|location=Sequence derived from alignment at CM002458.1:713754..715962+ (Nannochloropsis gaditana)
AAAGGGCAATACCTAGATTTTTGTCATGATGGAGTTCTTCCGAGGGTAGA
CGGGCACACCCAGTCTGATCCGGGCAACGAGCCCTTTCCCTACAAAATCC
CAGAAGAATCATGAATGAACCACCGGCGTTGGCCAATCTGCGCGACAATA
TCACGCCCTTATTTAcaagtagcagcagcagcaacaacagcagcagcggt
tTGTGGTCCTACGGCGGAAGTGTTGGTGGAGACGGTACCACTCAGGACGG
TGGCGGCGGTTGCAGTAGCGCGGACGCGCAGCCCCAAGAGCAAGCTCCAT
TTCACAATATCAGCCCATCATTTAGTACACCTCCTTGGTCGAACGAGTGG
GGAGACAGTCGAGAAGGTAAAAGCTCAAGCTCTGCGGGCATGGGACATGG
AAATAGCGCCTCTGTCCTAaaccacctccaccctccggTCTCTCCACCGC
CATGCGCATTAAAGCTCCGGCCTCGGGACTCCGCATCCTCCAATTGTAGC
ATGAATGAATTTTATTGCCgcacggagggagcggctgcagctgcagcagc
tgcagcaggtGCGGTCGTGAACCGCTTTGTGGTGCCGGGCACTGAAGCTT
GTCTTACTTCAGGCTCCCCCTCGGATCTCTCTTCTCCGGGCCCCGACCCG
CGGCACTCGCGCAAGCAAGACTGGGGTCCTGGTGCTTTGGAGATGGGTTC
TCGCATGTCCTCCCCGGGGGGCGGCTCTCCCTTATTCAGGTCATCGAGTC
CCACCGCTTCCCACGGAGGGCGTTCGCCTGTGGTCGAGCTGGAGTGCTCC
CTGTCCGGCCTCGTGTTGGACcgtggaggggagcgagcggGCTCAGAGAG
CGCTTGGGCCCTTCCGGGACGGTCCCCAGACAATGTGAAGTACCAGCAGC
AACACCAGCAcgatcagcagcagcaccaccacGAGCGCCGAGGAGACCAG
CCCTACCCGGCgccacagcagcaacagccgaTGTCTCGACAGCTTCGAGG
TGCGCATGGACTGGGAGGCTCCGCATTTGACGAACGATCTGCCTTCAATA
GCCAGCTGCACGTGGGCGGCGTGCGGGGACAGGGGAATCGCCCCTACGCC
TCCAATCAGCCCCAAAAACCACCGGCTCCGCAACCTCACCAGGCGCTCAT
GATCCAGATTCcgaccttgtcctccgccttgggTTCGGGCCCCAGCAGCG
CGCCTGCGGCCGGCATGAGCAACCGGAGCTACTTGTTCGCGGAAGGCGGC
AGTGAAGGCGGGCGTAACCGGGGCAGCTTTTCCCCTACGCTGCACAACCA
GGcttccccacgtcctccgggAAGCGGCAATTTGGGCAACATGGGCATGG
GAATGGCGGCTAGAAACAGCTTCCACAACCAGTCGCCACGACAGTACCAC
TACCAGGCTAACCAGTCCCCTTACATGCATGGTGCCGCCGGGCGCAGCGG
CAGCCTCGGCCGCAGTGGCGTGTCAGGCGCGGCGTACGGCGGATCTCCCC
CGCACTTGATGGCCACCGCAcgccgtggcggtggaggaaaccGTGGtatg
ggcggaggggcgggcggaggtgggATGTACTCGCCCACGGGGTCGAGTCC
GATGGGGAGCCCGACGGGAAGCGGTGGGGACGAGTATtacgggggcggag
gatcTCCACGCTGGATGGGCCACGGGGGAcacggcgggggcggtgcgatg
gatgtggaggcaAAGAGGTGCAGCAACGCGATCAAAAAGCTGTGCAGCGC
CGGGAACGTGACGGAGGTGTTcgcggtgctggaggacatgctggGCCGTG
GACTGGTCCCGGATTTGAAGACGGTCAAAACGATCATGCGCACCTGCGTG
AAGAAGCTtgcgtggcggagggcggtgcAGTTGTTGCATATGGAGGGGCT
GCCGCTGGACGTGGTCATCTTCACGATGGCCATCAACACCTGcggcaagg
cgggggagtGGGAACAAGGCCTGCGAGTCCTCCGGGAAATGGACTCGGAC
GATGCGAAGGCTCGCGGGATCTTGCCCAACGAGGTGAGCTACGGTACTGC
AATCTCCGCGTGTGGCAAGGCGGGTCGTTGGGAGCTGGCGCTCTCGCTTT
TGAACGAGGTCAAGGGCCGGGGGTTGCTCTTGAACGACGTCTGCTACGGC
GGCGCCATCGACGCTTGTGGACGCGCGGGCCAGTGGCAGGAGGCTCTCAA
ACTTCTCAG back to topCoding sequence (CDS) from alignment at CM002458.1:713754..715962+ >rna2019 ID=rna2019|Name=rna2019|organism=Nannochloropsis gaditana|type=CDS|length=2099bp|location=Sequence derived from alignment at CM002458.1:713754..715962+ (Nannochloropsis gaditana)
ATGAATGAACCACCGGCGTTGGCCAATCTGCGCGACAATATCACGCCCTT
ATTTAcaagtagcagcagcagcaacaacagcagcagcggttTGTGGTCCT
ACGGCGGAAGTGTTGGTGGAGACGGTACCACTCAGGACGGTGGCGGCGGT
TGCAGTAGCGCGGACGCGCAGCCCCAAGAGCAAGCTCCATTTCACAATAT
CAGCCCATCATTTAGTACACCTCCTTGGTCGAACGAGTGGGGAGACAGTC
GAGAAGGTAAAAGCTCAAGCTCTGCGGGCATGGGACATGGAAATAGCGCC
TCTGTCCTAaaccacctccaccctccggTCTCTCCACCGCCATGCGCATT
AAAGCTCCGGCCTCGGGACTCCGCATCCTCCAATTGTAGCATGAATGAAT
TTTATTGCCgcacggagggagcggctgcagctgcagcagctgcagcaggt
GCGGTCGTGAACCGCTTTGTGGTGCCGGGCACTGAAGCTTGTCTTACTTC
AGGCTCCCCCTCGGATCTCTCTTCTCCGGGCCCCGACCCGCGGCACTCGC
GCAAGCAAGACTGGGGTCCTGGTGCTTTGGAGATGGGTTCTCGCATGTCC
TCCCCGGGGGGCGGCTCTCCCTTATTCAGGTCATCGAGTCCCACCGCTTC
CCACGGAGGGCGTTCGCCTGTGGTCGAGCTGGAGTGCTCCCTGTCCGGCC
TCGTGTTGGACcgtggaggggagcgagcggGCTCAGAGAGCGCTTGGGCC
CTTCCGGGACGGTCCCCAGACAATGTGAAGTACCAGCAGCAACACCAGCA
cgatcagcagcagcaccaccacGAGCGCCGAGGAGACCAGCCCTACCCGG
CgccacagcagcaacagccgaTGTCTCGACAGCTTCGAGGTGCGCATGGA
CTGGGAGGCTCCGCATTTGACGAACGATCTGCCTTCAATAGCCAGCTGCA
CGTGGGCGGCGTGCGGGGACAGGGGAATCGCCCCTACGCCTCCAATCAGC
CCCAAAAACCACCGGCTCCGCAACCTCACCAGGCGCTCATGATCCAGATT
CcgaccttgtcctccgccttgggTTCGGGCCCCAGCAGCGCGCCTGCGGC
CGGCATGAGCAACCGGAGCTACTTGTTCGCGGAAGGCGGCAGTGAAGGCG
GGCGTAACCGGGGCAGCTTTTCCCCTACGCTGCACAACCAGGcttcccca
cgtcctccgggAAGCGGCAATTTGGGCAACATGGGCATGGGAATGGCGGC
TAGAAACAGCTTCCACAACCAGTCGCCACGACAGTACCACTACCAGGCTA
ACCAGTCCCCTTACATGCATGGTGCCGCCGGGCGCAGCGGCAGCCTCGGC
CGCAGTGGCGTGTCAGGCGCGGCGTACGGCGGATCTCCCCCGCACTTGAT
GGCCACCGCAcgccgtggcggtggaggaaaccGTGGtatgggcggagggg
cgggcggaggtgggATGTACTCGCCCACGGGGTCGAGTCCGATGGGGAGC
CCGACGGGAAGCGGTGGGGACGAGTATtacgggggcggaggatcTCCACG
CTGGATGGGCCACGGGGGAcacggcgggggcggtgcgatggatgtggagg
caAAGAGGTGCAGCAACGCGATCAAAAAGCTGTGCAGCGCCGGGAACGTG
ACGGAGGTGTTcgcggtgctggaggacatgctggGCCGTGGACTGGTCCC
GGATTTGAAGACGGTCAAAACGATCATGCGCACCTGCGTGAAGAAGCTtg
cgtggcggagggcggtgcAGTTGTTGCATATGGAGGGGCTGCCGCTGGAC
GTGGTCATCTTCACGATGGCCATCAACACCTGcggcaaggcgggggagtG
GGAACAAGGCCTGCGAGTCCTCCGGGAAATGGACTCGGACGATGCGAAGG
CTCGCGGGATCTTGCCCAACGAGGTGAGCTACGGTACTGCAATCTCCGCG
TGTGGCAAGGCGGGTCGTTGGGAGCTGGCGCTCTCGCTTTTGAACGAGGT
CAAGGGCCGGGGGTTGCTCTTGAACGACGTCTGCTACGGCGGCGCCATCG
ACGCTTGTGGACGCGCGGGCCAGTGGCAGGAGGCTCTCAAACTTCTCAG back to top
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