rna2014, rna2014 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2014
Unique Name	rna2014
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1886
Alignment location	CM002458.1:702775..704252 +

Link to JBrowse

Properties


Property Name	Value
Product	3(2),5 -bisphosphate nucleotidase HAL2
Orig transcript id	gnl\|cribi\|Naga_100002g8.4880.mrna
Orig protein id	gnl\|cribi\|Naga_100002g8.4880
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:702775..704252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g8	gene1925	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2014	rna2014-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28761.1	cds2006	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:702775..704252+
coding sequence from alignment at CM002458.1:702775..704252+

mRNA sequence

>rna2014 ID=rna2014|Name=rna2014|organism=Nannochloropsis gaditana|type=mRNA|length=1886bp
TAGGTGAAAGTCGGCTTCGAATGAATAGTCTCACTCCCTTCTTGTCGCAC
GCACAGACTTGCAAGGGAGAATAGGCTTTGACAGGTTGGCTGCACACTCA
AGCATGGATGCACCTCCGGCAAAGCCTACAGTCATGAAAAAAATGAAGGC
CATCAAGCGGAGAGGAGTCGAGGCAATATTTCAGAAAATTGGCGTCTCGG
ACGGGACCTTGGACACGGAATATGAGGACTGCAAGCAACGTTTCGACCGC
ACCATCCGGGAGCTGGGTGAGCTCAGCCAGGGAATGGGCGCTTTCCTGGA
CAAAAGCAAGGACCTCTTCGGCGTGGGCATGGACCTGGGTGGTACTGTCT
ACGAATACTACTGGGGCCGGCTGATGATGGATTGGCCCCCTGGCACGCCC
AACGCCCTTCGCTCCCACCCCGCCGCCGCGCAATACAAGCAGGCCTGGAC
GCACTGCAACGAAACGGTGCGTCGGTCTGTGGCCAAGGTGTGGCTCGATC
AGGGTCTGACGCGGCTGCGGGCTTTCATTGCTGACATCGTCCCTGAGATC
CAGCACGAAGCCGACCTTCGCGAGGCCTACGTCAAGGACTACGACTCTTA
CCGCCGTCGCTTCAACGCTCTACAAGACAAGCAAGTCAAGTACGCGGCTG
CTCCCGCACCGGCCAACGGCGCCCCCAATCATCGCCTAGCAGAGGTAGAA
AAGGCCCTTTACCAGATCCAGAGCAAGCTCCACGCTGCAGAAGATCGCTA
CAGGCGCCAGAACGCCAAAATCAAGGACGAGATGCTCAAGGCCAAGCTCT
TCCGGGACGAACTTTTGGAGACTTCACTGCGCACTGTTTTGGCATGTCAG
GCAGAGCTCTTCTGTCAGACGGGAGAGCACTTGAGCCAGCTATTGAAAAG
CTTGCCGGAGGAGGAGAAAGTCGAGTCTCTACGCACGCAGGTCAAAGACT
TGGTCGCGGCGGGGGGGCCGGAGGCGAGGCCTGTGGAACTCTCGCAGATG
GAGAAGCTTGTGAAAGCCGTCACTGCCACCGTCACGACCACCTTTACGCC
GCGTTCCCCGTCTCCAGTCCATCCAGGAGCGATGCCGCCGGCGTCTCAGT
CGGCCTTGGATCATCAGCCTGCACAGGGGGGTCAGCCCACGCCTGTAACC
AACGCCAGCCAATCAGGGCCCCCGAAGAGCCCTCACAAACCTACCTCGAG
CGCCCTGGTCGCTAGTGGCGGAGGCCTTAATGGCAATAGCGAAGGTGGTC
GTACCAGTGGCATGTTCTCCAGCTTTTTTAGCCGTCAGTCTAGCCGGGGG
GATGCCAGTAAGGGCGGCGGATCGACGACCGCGGGGGCGGGCCTGTCGAC
CGCAACAGGATACGACAAGATGGGCTCTTCAAACGGTGCGGCTCACATGG
ACGACGCCCTTCCACTACCCATGGCAACTGCAGCCCCGCCTAACTCCTCC
CAGAAGCCTGTGTTCGCGCGCGCCCTCTACGACAACGAGGCCGAAGACGA
GACCGAGCTTGCGTTTATGGTGGGCGATTTGATAGAAATCCTGGCCAAGG
ACGACTCGGGGTGGTGGGACGCCCGACTCAATGGGAAGGTGGGCTCGATC
CCCGCCAATTACGTGGAGGTCATTCCCTAAACAGGAAGTTCGAGGGAGTG
GCGTGTCTCAATCCTGCGCACGCAGACCTTCACCAGCTATCGCATGTGGA
ATGATCAAACGTCGTTCTTTCAGTGCCAAGAGTCGTCTACTGTGGTGTCA
GGCAATCATCAATCTCACATTCATCCCTTTCATGCTTTCATTGTCACTCC
AAACACCACTGCGGAGATTTGTATGTAAAATTTTACGAAGCTAAGGAAGA
GAAAGTATATCACACACCGTCCCTTAATGTCAAAGG

protein sequence of rna2014

>rna2014-protein ID=rna2014-protein|Name=rna2014|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MQRLHLPQKQAMISSPHIFLALFLFLSGRVAMAFSSIRRPSRTNSRPWLC
MTTTNLQDELTVAISTARKAGIAAKRLQKTLIETKRAAIEKSDSSPVTIA
DYTVQALVIAALRVSFPGDQVVAEETSGVLRQDPVALAAVMDVFRLESGE
TYVTEESLCEILDHGRLPGPRTWILDPIDGTKGFIRGEHFCVALGMALEG
KPVLGVLACPNVPSSTSRSNGASLGDGCVFFALKGQGAFMLPLEANGSSL
AEEITHAVPIRVSPATAGEEARFFESVETAHSSHSVGAEAARALGVITPP
VQMDSQCKYGLLARGEGEVMLRLPRLGYIENIWDHAPAYVVITEAGGRVT
DTEGKELDFAEGCRAGTGKMGREVTGIVTTNGRLHDLVVESLRSFWPPRG
G

mRNA from alignment at CM002458.1:702775..704252+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2014 ID=rna2014|Name=rna2014|organism=Nannochloropsis gaditana|type=mRNA|length=1478bp|location=Sequence derived from alignment at CM002458.1:702775..704252+ (Nannochloropsis gaditana)
ACGCGAAATGCAACGCCTCCATTTGCCACAAAAACAGGCTATGATTTCGT
CGCCTCATATTTTTTTGGCCCTGTTCTTATTTTTGTCCGGTCGGGTGGCC
ATGGCTTTTAGCTCTATTCGTCGGCCCTCCCGCACAAATTCTCGCCCGTG
GCTCTGCATGACAACGACAAACCTCCAAGATGAGCTAACTGTAGCAATCA
GTACGGCTCGTAAAGCTGGCATCGCAGCAAAAAGGCTGCAAAAAACTTTG
ATTGAAACGAAACGTGCGGCGATCGAGAAATCCGATAGCAGCCCCGTCAC
GATTGCGGATTATACCGTACAAGCTCTAGTGATTGCGGCCCTTCGTGTCT
CCTTTCCTGGGGACCAAGTGGTGGCCGAAGAGACTTCAGGCGTACTTCGG
CAAGATCCAGTCGCCTTAGCAGCTGTTATGGATGTTTTCCGGCTCGAAAG
TGGCGAAACATACGTCACTGAGGAGAGTTTGTGTGAGATTCTTGACCATG
GCCGGCTCCCGGGGCCTCGGTAAGATTATATAGTGGCAAACATGACCCTC
GAGATGAGCATGGAGGCAGGCGTACAACCAAAGCTGCGACGCTGCCTTAA
ATCAAGACAGTGTGCGCGAGTTTTAGGCACAGCTAAGAAAGCGAATGTGT
GGCAGCAAGCTCACCTGAGCGTTTCCATCTCATCGATTCCTGACTGTGCA
ATCGACTACTCTATTGTCACATAACACAGCACGTGGATCTTGGACCCCAT
CGATGGAACGAAAGGCTTTATCCGTGGTGAGCATTTTTGTGTGGCCCTGG
GCATGGCGCTGGAGGGCAAGCCCGTGCTGGGCGTGCTCGCGTGCCCAAat
gtcccctcctcgaccagcCGCAGCAACGGGGCCTCTCTTGGCGATGGCTG
TGTCTTCTTTGCTCTGAAGGGCCAAGGGGCCTTCATGCTGCCACTGGAAG
CAAATGGAAGTTCTCTGGCAGAGGAAATCACCCATGCCGTACCCATTCGC
GTCAGTCCAGCGActgcgggggaggaggcgcgctTCTTCGAGTCGGTGGA
GACCGCCCATTCCTCCCACTCGGTGGGTGCCGAGGCGGCAAGAGCGCTCG
GCGTAATAACTCCTCCTGTGCAGATGGACAGTCAATGCAAATACGGACTC
CTCgcgcggggggaaggtgaggtgATGCTGCGCTTGCCCCGTTTGGGCTA
CATAGAGAATATCTGGGACCACGCCCCTGCCTACGTAGTAATaacggagg
caggggggcgGGTCACAGacacggagggaaaagagctGGATTTCGCAGAG
GGCTGCCGTGCAGGGACCGGGAAAATGGGCCGGGAGGTGACGGGGATCGT
CACCACGAACGGGCGGCTGCATGATCTCGTCGTCGAGTCCCTCAGGTCCT
TCTGGCCGCCGCGAGGGGGATGACGCTTTCATCCGTGTAGTACAAAACAT
CATTTACAAAAAAGTTTTTATTCCGGCG

Coding sequence (CDS) from alignment at CM002458.1:702775..704252+

>rna2014 ID=rna2014|Name=rna2014|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002458.1:702775..704252+ (Nannochloropsis gaditana)
ATGCAACGCCTCCATTTGCCACAAAAACAGGCTATGATTTCGTCGCCTCA
TATTTTTTTGGCCCTGTTCTTATTTTTGTCCGGTCGGGTGGCCATGGCTT
TTAGCTCTATTCGTCGGCCCTCCCGCACAAATTCTCGCCCGTGGCTCTGC
ATGACAACGACAAACCTCCAAGATGAGCTAACTGTAGCAATCAGTACGGC
TCGTAAAGCTGGCATCGCAGCAAAAAGGCTGCAAAAAACTTTGATTGAAA
CGAAACGTGCGGCGATCGAGAAATCCGATAGCAGCCCCGTCACGATTGCG
GATTATACCGTACAAGCTCTAGTGATTGCGGCCCTTCGTGTCTCCTTTCC
TGGGGACCAAGTGGTGGCCGAAGAGACTTCAGGCGTACTTCGGCAAGATC
CAGTCGCCTTAGCAGCTGTTATGGATGTTTTCCGGCTCGAAAGTGGCGAA
ACATACGTCACTGAGGAGAGTTTGTGTGAGATTCTTGACCATGGCCGGCT
CCCGGGGCCTCGCACGTGGATCTTGGACCCCATCGATGGAACGAAAGGCT
TTATCCGTGGTGAGCATTTTTGTGTGGCCCTGGGCATGGCGCTGGAGGGC
AAGCCCGTGCTGGGCGTGCTCGCGTGCCCAAatgtcccctcctcgaccag
cCGCAGCAACGGGGCCTCTCTTGGCGATGGCTGTGTCTTCTTTGCTCTGA
AGGGCCAAGGGGCCTTCATGCTGCCACTGGAAGCAAATGGAAGTTCTCTG
GCAGAGGAAATCACCCATGCCGTACCCATTCGCGTCAGTCCAGCGActgc
gggggaggaggcgcgctTCTTCGAGTCGGTGGAGACCGCCCATTCCTCCC
ACTCGGTGGGTGCCGAGGCGGCAAGAGCGCTCGGCGTAATAACTCCTCCT
GTGCAGATGGACAGTCAATGCAAATACGGACTCCTCgcgcggggggaagg
tgaggtgATGCTGCGCTTGCCCCGTTTGGGCTACATAGAGAATATCTGGG
ACCACGCCCCTGCCTACGTAGTAATaacggaggcaggggggcgGGTCACA
GacacggagggaaaagagctGGATTTCGCAGAGGGCTGCCGTGCAGGGAC
CGGGAAAATGGGCCGGGAGGTGACGGGGATCGTCACCACGAACGGGCGGC
TGCATGATCTCGTCGTCGAGTCCCTCAGGTCCTTCTGGCCGCCGCGAGGG
GGATGAATGCAACGCCTCCATTTGCCACAAAAACAGGCTATGATTTCGTC
GCCTCATATTTTTTTGGCCCTGTTCTTATTTTTGTCCGGTCGGGTGGCCA
TGGCTTTTAGCTCTATTCGTCGGCCCTCCCGCACAAATTCTCGCCCGTGG
CTCTGCATGACAACGACAAACCTCCAAGATGAGCTAACTGTAGCAATCAG
TACGGCTCGTAAAGCTGGCATCGCAGCAAAAAGGCTGCAAAAAACTTTGA
TTGAAACGAAACGTGCGGCGATCGAGAAATCCGATAGCAGCCCCGTCACG
ATTGCGGATTATACCGTACAAGCTCTAGTGATTGCGGCCCTTCGTGTCTC
CTTTCCTGGGGACCAAGTGGTGGCCGAAGAGACTTCAGGCGTACTTCGGC
AAGATCCAGTCGCCTTAGCAGCTGTTATGGATGTTTTCCGGCTCGAAAGT
GGCGAAACATACGTCACTGAGGAGAGTTTGTGTGAGATTCTTGACCATGG
CCGGCTCCCGGGGCCTCGCACGTGGATCTTGGACCCCATCGATGGAACGA
AAGGCTTTATCCGTGGTGAGCATTTTTGTGTGGCCCTGGGCATGGCGCTG
GAGGGCAAGCCCGTGCTGGGCGTGCTCGCGTGCCCAAatgtcccctcctc
gaccagcCGCAGCAACGGGGCCTCTCTTGGCGATGGCTGTGTCTTCTTTG
CTCTGAAGGGCCAAGGGGCCTTCATGCTGCCACTGGAAGCAAATGGAAGT
TCTCTGGCAGAGGAAATCACCCATGCCGTACCCATTCGCGTCAGTCCAGC
GActgcgggggaggaggcgcgctTCTTCGAGTCGGTGGAGACCGCCCATT
CCTCCCACTCGGTGGGTGCCGAGGCGGCAAGAGCGCTCGGCGTAATAACT
CCTCCTGTGCAGATGGACAGTCAATGCAAATACGGACTCCTCgcgcgggg
ggaaggtgaggtgATGCTGCGCTTGCCCCGTTTGGGCTACATAGAGAATA
TCTGGGACCACGCCCCTGCCTACGTAGTAATaacggaggcaggggggcgG
GTCACAGacacggagggaaaagagctGGATTTCGCAGAGGGCTGCCGTGC
AGGGACCGGGAAAATGGGCCGGGAGGTGACGGGGATCGTCACCACGAACG
GGCGGCTGCATGATCTCGTCGTCGAGTCCCTCAGGTCCTTCTGGCCGCCG
CGAGGGGGATGA

Synonyms

Publications