rna2006, rna2006 (mRNA) Nannochloropsis gaditana

Overview
Namerna2006
Unique Namerna2006
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length741
Alignment locationCM002458.1:672593..678587 +

Link to JBrowse

Properties
Property NameValue
Productarginyl-trna synthetase
Orig transcript idgnl|cribi|Naga_100002g15.4872.mrna
Orig protein idgnl|cribi|Naga_100002g15.4872
GeneARGRS
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:672593..678587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ARGRSgene1917Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2006rna2006-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28753.1cds1998Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2006 ID=rna2006|Name=rna2006|organism=Nannochloropsis gaditana|type=mRNA|length=741bp
ATGCTTGTGTATGTTCCTTACGCCATTTTCTCTTTCGCAGTTTGCAGTAT
TCCGCCAGAGTATTGCATCTTTAACCCCCCTGATTTGTACGCCGATTGCC
TGAGATGGCAAGCGAAGTGCCACACGGAGCTTTTACCTGAGGGTGCATCG
GTCGACGACATGCTGGCAAAGCTTAATCTGCACAATTCCGGAAGTGGAGG
GAAAATTAACAGCAGTGGTGATGGTCGAGCAGGTGCCAATGCAGCAGCAG
GCGAAGGAGAGAGCACAGGCGAGGGTGAAGAGGATGACGGAAACGGAAGA
GAAGAAGACGAATGCGGCAAAAAGAAGAAAGGAGGGCCTAAAGGGATTAA
GAAGAAGGAGACGGCATCAGGGGGCAAGGTCCTCATCATGCGCATGTCTC
GGAATAAGCGCAAGTCAATCACAGTGGTCACAGGCCTCGATTCCTATCCA
GATTTGAAGCTCAAGGACGTGGCCAAGGCGTTGGGAAAGGCCTTTGCGTC
CGGAGCATCTGTTTCGGATACCGGCAGCGGAGGGAAGGAAATTGTAATTC
AGGGCGACGTCATTGACAGCCTGGCGATAATGCTTGAGGAAAAGTATAAG
GTAGGTACCCGCGACAAATATAATGATCAAATCATAAAGCACGTCGTCCA
CAAGGAATGTCAGGAGACGAAGAGAAAACATCGATGGCGCACGCCTTGTG
TTCCAGCGTTCACCAGACAAAGCGTCAAGCCTGAAGTTTAA
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protein sequence of rna2006

>rna2006-protein ID=rna2006-protein|Name=rna2006|organism=Nannochloropsis gaditana|type=polypeptide|length=822bp
MEKKKEKRQPERVGAVRSTTAGKNIAARKTTVDSRQGACLYPGGDVEGTH
MILAVAHAADIKMKRGFGRKQGSWGDQGPYLDMGTQTVSGVEGAVRALAL
NGTSLAACRPATDEWVEWGFRRLAAATSHASEEEEGARHLLQELAVLEAA
LARCPRSLLTSEAAKPITTLADIVLAPLSLRALKFFGEHEYPLTRAWAAS
VVRGPESPYAATAALVQEGGAFEGTGGKIDPRRGLLAVITALFTEAMHEA
FPELAGNPNFRRADVAKCGNAVHGDYQCNSPMAIYKAIKATGRPSVLARP
QDVAKALIDSLPAKGHEVCAEVSVAGAGFINVRVQGAYLQARVKDILLHG
PQAAMARKLRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRMLEFLGHDVA
RVNHVGDWGTQFGMLIKYLKEEYPNFMQDPPNITDLTGFYKAAKARFDES
PAFKERARVGVVELQAGDPESRAIWKLLCDISRAEFQKVYDRLDVRLEEY
GESFYNDRIPAVIEELKAENLLEEDGGAMIMWCGGKHQIPLMVRKSDGGY
GYDSTDLAAIRYRLKDLSRDWVIYITDAGQATHFHMIFDAARMAGWVDEE
HGRHRLDHVGFGVVQGEDGKRFKTRSGDTVRLVDLLDEAVVRMTASLTQR
IEDGKSALSKSEACEAAAALGYGAVKYADLKQNPGTDYQFSYDRMLDTKG
DTAIYLLFTCARFHSILRKAEEEKGIDVKALEAGGDVVLEHPTERALALE
LAQFAEALQQAVLELMPNRLTSYVFFLSARGTDFLEACHVLTHPKRLVLV
HATALTIAHCLELLGITPLTKI
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mRNA from alignment at CM002458.1:672593..678587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2006 ID=rna2006|Name=rna2006|organism=Nannochloropsis gaditana|type=mRNA|length=5995bp|location=Sequence derived from alignment at CM002458.1:672593..678587+ (Nannochloropsis gaditana)
CCAACTCTGAAGAGATAGTGAAAATGAACAGATTGCGGGGAATGTGAATG TGGGGGCATCACGTTGGAGAGTGGAGCAGGCAGGTGATGTGCGCAGTGTG GAATGTTTCCTCGAGGTACTTTTTGTGTTCCTGAGACCTGACAGAACCCT ACCATTTTACGCAAGCATTTGGTACGCAATATGCACGGTGCCTATCTCTT ATGTACTTCTCGCTGCTCATGGGCTGTTGTGGTACAAAGTTTTTAAGATA TAACGAACTTATATATGTGTTGCGGAAATATGGCCGGGCGTGCGTCAGGC TCACTAAACCATAATCCCGCACTCCATCACACAGGCTGTCGACTCGCTCC ACATCGATTCAGGCTGGATTGTCGGACAGCCTAGGCACAGCAGCTCTTGC GCAGAAGTGAAGACAATGCATTGGCTCCTTTTTCAGAACAGAAGCCTAAT AGGCAGAGGGGGCGCCCCGCCTGGTGTCGCCCTGCGCGTCGCagctttcc tcttcttcgctgGGGGCGTCGAAACTTTTGTGTTCGGTGGCACATCTTTG TCCTCGCACAAGGTGTCGCAGCAGCCGTCAGCAGCTCCAGTGGAGTGGGC ATGGGTAGGGTGGAGACCGTGGTCTGTGGCCCCCCGGCGACCTTGctggg tggcggcggggaggggaggcgaagagtGGGACAGTGCGGGCAGTAGCGGG GCCGGAGGTGGGAACGAGATGGGCCGGGAAAACGTATGGGCCACGCAAGC GCCGGGCGAGGACGACTGGTGCATGGATACGCCCCGCATCCACTATTtgc gggagatggagaagctGGGCCAGGAGGTGCACGACCTCACGGGGCTGGGC AGCGGGGGGGCCGCAGACGTGCAGGGGCTGGTGGTATCCACGCCTTGGGC GCCTGCTCAACCCTTCCAGCCGTCCTCGGTGCCATTCCCGCAGGTGCCCC CCGGGGCGGCGTCGGAGCAGGCGAAGACAGCGCGGGAGGTGGCCttgcag gaggagctgcggcgtcaggtggtgatggcggaGGGCTGCGCCATGAACTG GCGCGAGGAGCCGGCTTTCTGTCGGCCTGTGGGCCACGTGCCTGGCAACC GGAAGGTGCAGCAGGTGAAGCTCTCAGAGGACCGCGTCATGTATGGCTCC gacgcgggggcggtggggctgGCCTCAGCCTTGGACGGCCGGGAGCTTTT CCGCGCGCAGGCGCACGCGGCGCTGGTAACGGCGCTCGACTACGACGCGG GCACGGGGTGGATGGTGTCGGCGGCGGACGACGGCGTGGTCAAGGTCTTc cgggagcaggagcgtgaagtaggaggggcagggggggggcgcgtggaATC TGTGGGGCCAGGAATGCGCCACCACAGCAGccgggtggtggcggcggagg tcCTGGACCATCGGTGGGGCCTGAGCGCTTCGATGGACGGCAAGATCGTC GTGTTCGAGCTGGACGGGGGCGCCTTGGTGCAGGAAATGTGGGCATCGGA CACGCTGCTGGCCGTCACCGTCTGCAAGAACTACGTATTTGCCGGGCTCC TGGGCGGGCCCGTGGAGGCCTTCTCCATCCGTAACGGCGGCCGCTCCGCC TTCCGCTACATCGCGCAACGGACGCCGGTGCGCTCGCTGTGCGCGTACCC CCTGGCAGGGAACCACATCcgcgtggtggtgggcggccAGGACGGGGCCC TGCGCCAGTTCCAGGTGCGGGCAGTCATGTCCTCGGAGGGGGTGTGGCGC GTGCCCCAGGACCGCGCCTTCGACGACCGGCTGGTGCTGGTGTGCAACAC CCACGTGGACCCGGACACGCGCGAGGTGGACCAGGGCTTTGTCCTGACGG GCCACCGGGGGcccgtggtggcggtggcgtgcgacgaggagaaggtggtg agcGCCTCGGAGGACGGTTCTGTTATCGTCTGGGACGCAGCCaagtcctc ccctcgcttcaCGGTCCGTGCGCATGTGGACGGCGAcctggtgggggcgg tggacTTCAACGAGCGGTATCTGGTGAACGACGGCACGCAGGGCAAGGTG ATGGTCTGGGACTTCGCGGTCGGCCACCCGCCTCGGAGGCCCGGGAGCAA TGGGCTGGGGGCTGCTGCAGACGTCGGGAGCCTCGGCGGCAGGCGTCGAC GGCCCTCTGCGGCAGGCCCGCGAGGCTCGcgtggccagggcggggggcaa tCCCGTCGGTCgcggacctcctccccctccccccgccatgacggcccccc tcccgcagACTCCCAGCGTGGGCAGAGCGGaaccccgccccccaccgAAG CCGAGGACCTGCGGccccacttccccttccttggtGGCTGGAACCTAGGC CACGGGCCCACAGACctggaaggggtgggaggaacgGGCAGGagcggccc tccctctccagatGCGACCGTCCCTACAGCGGACGTGGAGCACGCCGAGG CGGGCACGCCGCTttcgccctccgccgaggaagggggcgacaaggaagag ggggaagaagggcgctTGTAAAGCTCATCGACCTTGAATCGTTTGCAGAT GTCTACTTTTTCCGCTTGGAAATATTTGGTCATTCTCATTGTACAGTTAT TTTCGTGTGCCATACAAAGTACTTTGACTCCCTTGACAGAGCCACCTCGT TGGGAGTGTTAGCATATATACATAAAAAAGTGAATGATAAGATGTAGTAG GTGGTAGCGGTATGAACAAGTCGAAGAACCGCATGTAGCAATTGAGATAG GAGACAGAAGAAGTCGTCAGGTGAAACTTCAACCTGTGTTAATCGATGCC TGTGCAGGGATAAGAGCCAGATAATATACGGCAGAGGTTTGAAGGGAATA GATCGAGAGCTTAGCATGGACTCGATTTGTTAGCATTTCTCCTGTACATA CGCGTGGTTGCGGCCGCGCTGATTTTACAGTCCTCGGGGGCCTGGTGGTT GGACGCAATGTCGAAAGCTGTTCAAAAGGAAAATGAATATTAAGACTCGG TCAAGCGGGTTGAAAGTCCAGACTTCACCCTCTGCTGGCGAAGAATGATA GATCGCAGCGTATGGCTCTTTTAAATTTTCTTGATGTTGAATGGACGGGT GCTAGCGTGGGAACGTACGCTGCCAGCCCAGCAGCGGCGGTCGGCGAGGC AGCGAGGCAAGCTTTAGCCACCACTCAGACTGCCGCAATCAcatgccacc ctccctctagCCTCAGTTGTGCGATAAAGATTAAACATCGCGAAAGATGG TGCGCGTAGTATGGGGAGATACGGTGATGGGATGTGTAATTGATAGAGGA GGTGGTATGCTGCCtcggaagaagacgacggCTCGTTTCCCTCGTCTTTG TTCCACGTCCTTGATTCACTCGGCGTCCATTCCGCCCTATATACTGCACA GTCCTCTGAAATTACATCAGATAACGGTTTCAGTAGAGAGGTcaagaaga tggagaagaaaaaggagaaacgcCAGCCTGAACGCGTCGGCGCCGTCCGT TCGACAACCGCTGGCAAGAACATTGCCGCCAGAAAAACAACTGTAGATTC CAGACAGGGTGCCTGTTTGTATCCGGGAGGAGACGTTGAGGGGACGCATA TGATATTGGCTGTGGCCCACGCAGCTGACATAAAGATGAAGCGGGGCTTT GGTAGAAAGCAGGGCTCTTGGGGGGATCAGGGTCCGTATTTGGACATGGG AACGCAAACGGTgtcgggcgtggagggagcagTCCGCGCTTTGGCATTGA ATGGGACATCTCTGGCTGCCTGTCGTCCCGCAACTGACGAATGGGTTGAG TGGGGATTCCGGAGGCTGGCGGCTGCAACCAGCCACGcgtcagaggagga agagggcgcaCGGCACCTCCTGCAGGAGCTGGCAGTGCTGGAAGCCGCCC TCGCCCGATGTCCCCGCAGCCTGCTCACATCAGAGGCGGCCAAACCCATC ACCACCTTGGCAGACATCGTGCTGGCTCCATTGTCCCTGCGGGCCCTCAA GTTCTTCGGGGAGCACGAGTACCCCTTAACGCGAGCGTGGGCGGCATCGG TAGTGAGAGGCCCAGAGAGCCCCTACGCGGCCACAGCGGCCTTGGtacag gaggggggggcatttGAAGGCACTGGGGGGAAGATAGATCCGCGCCGGGG GCTGCTGGCTGTCATCACAGCGCTATTCACTGAAGCAATGCATGAAGCAT TTCCTGAGCTAGCGGGGAACCCGAATTTCCGGCGGGCCGATGTAGCCAAA TGCGGCAATGCGGTGCACGGAGATTACCAATGCAACAGCCCCATGGCAAT TTATAAAGCTATCAAGGCTACCGGTAGGCCCTCGGTCCTTGCTCGCCCTC AAGACGTGGCCAAGGCGCTCATCGACAGCCTCCCTGCCAAGGGCCACGAG GTGTGCGCCGAGGTCTCTGTCGCTGGCGCTGGATTCATCAACGTGAGGGT GCAAGGGGCCTACCTTCAGGCGCGAGTCAAGGACATCTTGCTGCACGGGC CCcaggcggccatggcgcgaaagcttaGAGTCCTGGTCGACTTCTCCAGC CCCAACATCGCCAAGGAGATGCACGTGGGCCATCTGCGGAGCACCATCAT CGGGGACAGCCTGTGCCGCATGCTCGAGTTCCTGGGGCATGACGTGGCGC GAGTCAACCACGTGGGCGACTGGGGCACCCAGTTCGGGATGCTGATCAAG TATTTGAAGGAGGAGTACCCCAACTTCATGCAGGACCCGCCCAACATCAC GGACCTGACAGGCTTTTacaaggcggccaaggcgcgGTTCGACGAGTCGC CCGCTTTCAAAGAGCGCGCCAGGGTCGGTGTTGTCGAGCTGCAAGCTGGG GATCCCGAGAGTCGGGCCATTTGGAAACTGCTGTGTGACATCTCGCGCGC CGAGTTCCAGAAGGTGTACGACCGGCTGGACGTGCGACTGGAGGAGTACG GCGAATCCTTCTACAATGACCGTATTCCCGCGGTGATCGAGGAGCTCAAG GCTGAAAACTtgctcgaggaagacggcGGAGCCATGATCATGTGGTGTGG GGGGAAGCATCAGATTCCGCTGATGGTCAGGAAGAGTGACGGTGGGTATG GCTACGACTCAACGGATTTGGCCGCGATTCGCTACCGGCTCAAGGACCTG AGTAGGGATTGGGTCATTTACATTACGGATGCGGGTCAAGCGACGCACTT TCACATGATCTTCGACGCTGCTCGGATGGCGGGGTGGGTGGACGAAGAGC ATGGCCGGCATCGGCTGGATCATGTTGGCTTTGGCGTCGtgcaaggggag gatgggaagcgGTTCAAGACCAGGTCTGGCGACACGGTCCGTCTCGTGGA TCTGCTTGACGAGGCCGTCGTACGGATGACCGCGTCTTTGACGCAGAGGA TTGAGGATGGCAAGTCGGCCTTGAGTAAGAGCGAGGCTTGCGAGGCTGCG GCTGCCCTTGGCTACGGCGCTGTCAAGTACGCGGACCTGAAGCAAAACCC TGGGACCGACTACCAGTTCTCATACGACCGCATGCTTGATACAAAAGGTG ATACTGCTAtttacctcctcttcacgtGCGCTCGTTTCCATTCCATTTTg cgcaaggcggaggaggagaaaggcattGATGTCAAGGCCTTAGAGGCGGG GGGTGACGTGGTCCTCGAGCATCCCACAGAACGTGCACTGGCGCTCGAAT TGGCACAATTTGCAGAGGCTTTGCAGCAGGCAGTCTTGGAACTGATGCCA AATCGCCTTACCTCCTatgtcttcttcttgtccgcGCGAGGGACAGATTT TTTAGAAGCTTGCCATGTCTTGACACATCCAAAACGTCTTGTGCTCGTGC ACGCAACAGCTTTGACTATCGCGCATTGCTTGGAACTGCTGGGAATCACA CCTCTGACCAAAATTTAAGGAAATGATAATAGAGAAAGAGCGCCCTGCAA GCATGATTTTAAGGCAAATTTAAAGTATCACGTATCAACAGGTCG
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Coding sequence (CDS) from alignment at CM002458.1:672593..678587+

>rna2006 ID=rna2006|Name=rna2006|organism=Nannochloropsis gaditana|type=CDS|length=2469bp|location=Sequence derived from alignment at CM002458.1:672593..678587+ (Nannochloropsis gaditana)
atggagaagaaaaaggagaaacgcCAGCCTGAACGCGTCGGCGCCGTCCG
TTCGACAACCGCTGGCAAGAACATTGCCGCCAGAAAAACAACTGTAGATT
CCAGACAGGGTGCCTGTTTGTATCCGGGAGGAGACGTTGAGGGGACGCAT
ATGATATTGGCTGTGGCCCACGCAGCTGACATAAAGATGAAGCGGGGCTT
TGGTAGAAAGCAGGGCTCTTGGGGGGATCAGGGTCCGTATTTGGACATGG
GAACGCAAACGGTgtcgggcgtggagggagcagTCCGCGCTTTGGCATTG
AATGGGACATCTCTGGCTGCCTGTCGTCCCGCAACTGACGAATGGGTTGA
GTGGGGATTCCGGAGGCTGGCGGCTGCAACCAGCCACGcgtcagaggagg
aagagggcgcaCGGCACCTCCTGCAGGAGCTGGCAGTGCTGGAAGCCGCC
CTCGCCCGATGTCCCCGCAGCCTGCTCACATCAGAGGCGGCCAAACCCAT
CACCACCTTGGCAGACATCGTGCTGGCTCCATTGTCCCTGCGGGCCCTCA
AGTTCTTCGGGGAGCACGAGTACCCCTTAACGCGAGCGTGGGCGGCATCG
GTAGTGAGAGGCCCAGAGAGCCCCTACGCGGCCACAGCGGCCTTGGtaca
ggaggggggggcatttGAAGGCACTGGGGGGAAGATAGATCCGCGCCGGG
GGCTGCTGGCTGTCATCACAGCGCTATTCACTGAAGCAATGCATGAAGCA
TTTCCTGAGCTAGCGGGGAACCCGAATTTCCGGCGGGCCGATGTAGCCAA
ATGCGGCAATGCGGTGCACGGAGATTACCAATGCAACAGCCCCATGGCAA
TTTATAAAGCTATCAAGGCTACCGGTAGGCCCTCGGTCCTTGCTCGCCCT
CAAGACGTGGCCAAGGCGCTCATCGACAGCCTCCCTGCCAAGGGCCACGA
GGTGTGCGCCGAGGTCTCTGTCGCTGGCGCTGGATTCATCAACGTGAGGG
TGCAAGGGGCCTACCTTCAGGCGCGAGTCAAGGACATCTTGCTGCACGGG
CCCcaggcggccatggcgcgaaagcttaGAGTCCTGGTCGACTTCTCCAG
CCCCAACATCGCCAAGGAGATGCACGTGGGCCATCTGCGGAGCACCATCA
TCGGGGACAGCCTGTGCCGCATGCTCGAGTTCCTGGGGCATGACGTGGCG
CGAGTCAACCACGTGGGCGACTGGGGCACCCAGTTCGGGATGCTGATCAA
GTATTTGAAGGAGGAGTACCCCAACTTCATGCAGGACCCGCCCAACATCA
CGGACCTGACAGGCTTTTacaaggcggccaaggcgcgGTTCGACGAGTCG
CCCGCTTTCAAAGAGCGCGCCAGGGTCGGTGTTGTCGAGCTGCAAGCTGG
GGATCCCGAGAGTCGGGCCATTTGGAAACTGCTGTGTGACATCTCGCGCG
CCGAGTTCCAGAAGGTGTACGACCGGCTGGACGTGCGACTGGAGGAGTAC
GGCGAATCCTTCTACAATGACCGTATTCCCGCGGTGATCGAGGAGCTCAA
GGCTGAAAACTtgctcgaggaagacggcGGAGCCATGATCATGTGGTGTG
GGGGGAAGCATCAGATTCCGCTGATGGTCAGGAAGAGTGACGGTGGGTAT
GGCTACGACTCAACGGATTTGGCCGCGATTCGCTACCGGCTCAAGGACCT
GAGTAGGGATTGGGTCATTTACATTACGGATGCGGGTCAAGCGACGCACT
TTCACATGATCTTCGACGCTGCTCGGATGGCGGGGTGGGTGGACGAAGAG
CATGGCCGGCATCGGCTGGATCATGTTGGCTTTGGCGTCGtgcaagggga
ggatgggaagcgGTTCAAGACCAGGTCTGGCGACACGGTCCGTCTCGTGG
ATCTGCTTGACGAGGCCGTCGTACGGATGACCGCGTCTTTGACGCAGAGG
ATTGAGGATGGCAAGTCGGCCTTGAGTAAGAGCGAGGCTTGCGAGGCTGC
GGCTGCCCTTGGCTACGGCGCTGTCAAGTACGCGGACCTGAAGCAAAACC
CTGGGACCGACTACCAGTTCTCATACGACCGCATGCTTGATACAAAAGGT
GATACTGCTAtttacctcctcttcacgtGCGCTCGTTTCCATTCCATTTT
gcgcaaggcggaggaggagaaaggcattGATGTCAAGGCCTTAGAGGCGG
GGGGTGACGTGGTCCTCGAGCATCCCACAGAACGTGCACTGGCGCTCGAA
TTGGCACAATTTGCAGAGGCTTTGCAGCAGGCAGTCTTGGAACTGATGCC
AAATCGCCTTACCTCCTatgtcttcttcttgtccgcGCGAGGGACAGATT
TTTTAGAAGCTTGCCATGTCTTGACACATCCAAAACGTCTTGTGCTCGTG
CACGCAACAGCTTTGACTATCGCGCATTGCTTGGAACTGCTGGGAATCAC
ACCTCTGACCAAAATTTAA
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Synonyms
Publications