rna2000, rna2000 (mRNA) Nannochloropsis gaditana

Overview
Namerna2000
Unique Namerna2000
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1333
Alignment locationCM002458.1:657643..658332 -

Link to JBrowse

Properties
Property NameValue
Productn6-adenosine-methyltransferase 70 kda subunit
Orig transcript idgnl|cribi|Naga_100002g21.4819.mrna
Orig protein idgnl|cribi|Naga_100002g21.4819
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:657643..658332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g21gene1911Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2000rna2000-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28700.1cds1992Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2000 ID=rna2000|Name=rna2000|organism=Nannochloropsis gaditana|type=mRNA|length=1333bp
GGGAGCGGAGAAGACGTCGAAGTCGAACGAAAAGGCCCCTACCCCGACTC
TCTCACGGCGTAACATGTCATTTGATCCTGACACATGACTTTTTAACAAC
CTTAGGTCATCTGACGTGGACGGTCAAGGCGAGTTTTTGGCCAACTGCTT
CTCGTAACCTGCTCGCGCTCGTCACCCATTTAAAACTCCACAAAGATTAG
TAAGCCGACTATTACGATTCATCATGACTTTCGACATCTCTAACCTGGGG
CAGACCACTTGGGAAGATCTCGACATGAACAAGCTCCTTATTTTCTCTAC
TTTAGCCACTCTTGTGGAAAACAGCATCATGTGGCCAATGTGGGCCATGA
AAACCCGGCAACAAGTTCAGACTGGGGCGGTCACGCACTCCTTGAGCGTG
CGCCGCATGGGCGGTTTACGCTCACTTTACAAGGGTTTCCTATTCTACGC
TATCGCGAGTCTTCCCGCCTACCTCACATACATAGGAACGTACACCTACA
CGAAGAGTGCGTTAAGCACGCCATCCGCTGACGGTCCTGTGGAAACCTCG
AAGGGCAGTTTCCCGCTTACCATGGCACCCATGGCTGCCGGTATCATGGC
TGATGCTGCCTGTTTAATTTTGTACATACCAGTGGAAATTGTGGCACAAC
GCTTACAACTGCCCACGCGCTATTCTGGAGTCCAACAGGTGCTTACGGAC
ATGTGGCGCGAGGACGGTTTGCGCACATTTTATCGGGGTTTCGGGGCGAC
ACTGGTGACGTCCTGCATCGCCTCGGGCGTGTGGTGGCAAACTTATGAAT
CATTAAAGTCGTTCTTTACAATGGCGACAACCTTTCCCCCTCCGCCGCTT
GAGATTGTATCGCCGTCCTCCGCGCCAACATCCTCAACATCATCATCCCT
TTTCTCTGTTGAACTTGTGCTCGATCAAGTAAGCGAGCTTTTCGCCGCCA
TTCGGCAGTCGCTCCCACACATGATTGCTGGCTTATTTGCGGGTGGTCTG
AGCGCTCTTGCCACGAACCCTCTAGACGTCGCCAAGACGCGGTTACAAAC
ACAGCATACCAAACCCGGACCCTTGACTTTCATACGAAGTCTAAATACCA
TCATACAGCAGGAAGGGCTGTGGCAGTCCTTTCTCCGTGGTTTCGCACCG
AAGCTTGTTTCAAGTGCTCCTCTTGGGATGCTGTCTTCTGTAATGTACGA
AGGTATTTTGTTCATGAGCCGAAAAGACAATCCTATGCTGGGAGGGAATA
CTACTGGAAGAGAAAATGCAAGTGATAAAGAGATGTAAACTATTTATGGA
AAGAAACGAAATATAAATCTTCCGAAGGCGGAG
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protein sequence of rna2000

>rna2000-protein ID=rna2000-protein|Name=rna2000|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MADPPWEIHMDLPYGTMSDDEVCKLDFPKVQEEEGGLLFLWVTGRAMERA
REIFQYWGYKQLEEIIWIKTNQLQKVIRTGRTGHWLNHSKEHCLVGVKGD
FVTAGLEGGGGRTRVNHYVDCDVIVAEARETSRKPDEIYDIIERLCPDGR
KIEVFGRKHNIREGWITVGNQLPPTHLVGDTLVRYREWEATER
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mRNA from alignment at CM002458.1:657643..658332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2000 ID=rna2000|Name=rna2000|organism=Nannochloropsis gaditana|type=mRNA|length=690bp|location=Sequence derived from alignment at CM002458.1:657643..658332- (Nannochloropsis gaditana)
ATGGCGGACCCACCATGGGAGGTAAGAGGCATGATATGTTTGAGATTTGG
CGCCACAGTATCTTAACGGAAGGTCAGACTCTGGCCTCCGCCTTTCACTC
CTATTCTTATATACTTTACACATCTCCAGATCCACATGGACCTTCCCTAT
GGCACCATGTCGGACGATGAGGTGTGTAAGCTCGACTTTCCCAAAGTACA
GGAAGAAGAGGGTGGCTTGCTTTTTTTGTGGGTGACAGGACGCGCGATGG
AGCGTGCGCGGGAAATCTTTCAGTACTGGGGATACAAGCAGCTGGAGGAA
ATCATATGGATCAAGACCAATCAGCTGCAAAAAGTCATTCGCACCGGCCG
AACAGGCCACTGGCTAAATCACTCGAAGGAACATTGCTTGGTAGGTGTCA
AAGGGGACTTCGTCACGGCAGGACTAGAAGGAGGCGGCGGACGTACTCGT
GTGAACCATTATGTTGACTGCGACGTGATCGTTGCTGAGGCCCGTGAAAC
AAGTCGCAAACCCGATGAAATCTACGATATTATCGAACGGCTATGCCCTG
ATGGTCGTAAAATAGAGGTTTTTGGTCGCAAACATAATATACGTGAAGGC
TGGATTACGGTGGGAAACCAGTTGCCTCCCACTCATCTGGTCGGCGACAC
CCTCGTTCGATATCGTGAATGGGAAGCAACCGAGCGATAA
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Coding sequence (CDS) from alignment at CM002458.1:657643..658332-

>rna2000 ID=rna2000|Name=rna2000|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002458.1:657643..658332- (Nannochloropsis gaditana)
ATCCACATGGACCTTCCCTATGGCACCATGTCGGACGATGAGGTGTGTAA
GCTCGACTTTCCCAAAGTACAGGAAGAAGAGGGTGGCTTGCTTTTTTTGT
GGGTGACAGGACGCGCGATGGAGCGTGCGCGGGAAATCTTTCAGTACTGG
GGATACAAGCAGCTGGAGGAAATCATATGGATCAAGACCAATCAGCTGCA
AAAAGTCATTCGCACCGGCCGAACAGGCCACTGGCTAAATCACTCGAAGG
AACATTGCTTGGTAGGTGTCAAAGGGGACTTCGTCACGGCAGGACTAGAA
GGAGGCGGCGGACGTACTCGTGTGAACCATTATGTTGACTGCGACGTGAT
CGTTGCTGAGGCCCGTGAAACAAGTCGCAAACCCGATGAAATCTACGATA
TTATCGAACGGCTATGCCCTGATGGTCGTAAAATAGAGGTTTTTGGTCGC
AAACATAATATACGTGAAGGCTGGATTACGGTGGGAAACCAGTTGCCTCC
CACTCATCTGGTCGGCGACACCCTCGTTCGATATCGTGAATGGGAAGCAA
CCGAGCGATAAATGGCGGACCCACCATGGGAGATCCACATGGACCTTCCC
TATGGCACCATGTCGGACGATGAGGTGTGTAAGCTCGACTTTCCCAAAGT
ACAGGAAGAAGAGGGTGGCTTGCTTTTTTTGTGGGTGACAGGACGCGCGA
TGGAGCGTGCGCGGGAAATCTTTCAGTACTGGGGATACAAGCAGCTGGAG
GAAATCATATGGATCAAGACCAATCAGCTGCAAAAAGTCATTCGCACCGG
CCGAACAGGCCACTGGCTAAATCACTCGAAGGAACATTGCTTGGTAGGTG
TCAAAGGGGACTTCGTCACGGCAGGACTAGAAGGAGGCGGCGGACGTACT
CGTGTGAACCATTATGTTGACTGCGACGTGATCGTTGCTGAGGCCCGTGA
AACAAGTCGCAAACCCGATGAAATCTACGATATTATCGAACGGCTATGCC
CTGATGGTCGTAAAATAGAGGTTTTTGGTCGCAAACATAATATACGTGAA
GGCTGGATTACGGTGGGAAACCAGTTGCCTCCCACTCATCTGGTCGGCGA
CACCCTCGTTCGATATCGTGAATGGGAAGCAACCGAGCGATAAATGGCGG
ACCCACCATGGGAG
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Synonyms
Publications