rna1996, rna1996 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1996
Unique Name	rna1996
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:641987..644687 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g24.4870.mrna
Orig protein id	gnl\|cribi\|Naga_100002g24.4870
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:641987..644687 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g24	gene1907	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28751.1	cds1989	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1996	rna1996-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002458.1:641987..644687-
coding sequence from alignment at CM002458.1:641987..644687-

protein sequence of rna1996

>rna1996-protein ID=rna1996-protein|Name=rna1996|organism=Nannochloropsis gaditana|type=polypeptide|length=769bp
MPASCGRKGPAGRRGKFELEASPRRPWRRPRLGISFHARDRHIHSTRNAL
GMESHLLEFDLIEHQLHEAEAELVRWPDLSPPAPSDRHRSASGSLGPKPS
DPVQYSQLAKVGGGRTNCPVFMAAGRLPSPSSTHQPFKTLRASDHAFRRR
HHTPTTFATSAAALSRLAQPRNEIYKERESLRREQEALKVAEAGCTFKPT
LCEGTEKRVAAAAAASRGEVVKPLPERLMEKKKASEQARRIRQAKVLEEL
ARECTFRPVLYTSASSGSGGRVPPSSTIISPSQCPKREKSLHERLGDVQR
ARREHLARLRAEREEVRAAEWTFQPRLCGMTERMARQRRLGNGNSDTGTF
QEKVKHPLGRQPSTFSRLVRDSERFLQQRMARRSASEARRHVDCRFAPTL
AQKTDELLVKAGWPSGFEARQQLWEDYRREKAVAVEQAMAAEEERWFKPV
LEPKSEAIVARIRSLRESKGHESDERPNLQGSVVHRLAVEERARREAARE
ARTMAALSDFHYEPSINPLSRALGRSSDIEELTYNWRGVVARNKAAEEAQ
ARFEAACTFQPEISNVHSDASLQRPALGSRSGHVSSKSDIAESVARNHGK
VKDRSFSGAQQPTSAGGEDRRGLKEAQAADTRAAREAEELKACTWSPLLT
KNMSRPRLDRHQSPVLVRGLGKFLARSQAAAQQRQGQASATAALAVGGAR
MRTNCVPSLYTMTTSRPFRLSSRPQDQRGSQAKVRSELERLARSSLTFRP
QTIERRKQAVLHKLLETKA

mRNA from alignment at CM002458.1:641987..644687-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1996 ID=rna1996|Name=rna1996|organism=Nannochloropsis gaditana|type=mRNA|length=2701bp|location=Sequence derived from alignment at CM002458.1:641987..644687- (Nannochloropsis gaditana)
CCGGTACGATGAGTTAATGGCATTGATTGGCTCTCCGAACGTAAATGCGA
GACCCTTTGGTTGCTTGAAAGGCTCCTAAAAAGAGCTCAACCCTATCGAT
GCCTCAAAAGCAAAGACGGGCAGAGGCCTGAGATGCCTGCGAGCTGCGGC
AGAAAGGGCCCAGCGGGAAGGAGGGGAAAGTTTGAACTTGAGGCCTCGCC
AAGGCGGCCTTGGCGACGGCCTCGTCTGGGAATCAGTTTTCACGCTCGCG
ACCGACACATCCACAGCACTAGGAATGCCTTGGGCATGGAATCCCATCTA
CTAGAGTTTGACTTAATAGAGCACCAGCTTCATGAGGCAGAAGCTGAGTT
GGTGCGATGGCCTGATCTCTCTCCACCGGCCCCATCAGACAGACATCGCT
CTGCCTCCGGTTCACTCGGCCCGAAACCCTCAGATCCAGTCCAGTATTCG
CAACTGGCCAAAGTGGGTGGTGGTCGCACTAATTGTCCAGTTTTCATGGC
TGCAGGCAGGTTGCCGTCCCCATCTTCAACGCATCAACCCTTCAAAACGC
TTCGAGCGAGTGACCACGCGTTCCGCCGCCGACATCACACTCCGACTACT
TTCGCAACTTCTGCCGCTGCACTTTCCAGGCTAGCTCAACCACGCAACGA
GATTTACAAGGAGAGAGAAAGCCTGCGTCGCGAACAAGAAGCACTCAAAG
TGGCTGAAGCGGGATGCACTTTTAAGCCCACCCTGTGCGAAGGGACAGAA
AAACGCGTTGCCGCAGCTGCAGCAGCCAGCAGGGGAGAAGTTGTCAAGCC
TTTGCCGGAGCGCTTGATGGAAAAAAAGAAAGCCTCAGAACAGGCTAGGC
GAATTAGACAGGCGAAAGTACTGGAGGAGCTGGCGCGCGAGTGCACTTTC
CGTCCGGTACTTTACACGAGCGCTTCGAGCGGGTCTGGAGGCCGCGTGCC
CCCGTCCTCCACAATTATCTCGCCGTCCCAGTGTCCCAAGCGAGAAAAAT
CCTTACATGAACGCCTTGGAGACGTTCAGCGGGCTCGCCGCGAGCACTTG
GCCCGACTCCGAGCGGAGAGAGAGGAAGTAAGGGCGGCAGAATGGACGTT
CCAACCGCGCCTCTGTGGGATGACAGAGCGGATGGCTCGCCAACGGCGCC
TTGGCAACGGCAATTCAGATACTGGCACTTTTCAGGAAAAGGTGAAGCAT
CCTCTGGGACGTCAACCTAGCACTTTCTCCCGACTTGTGCGTGATTCTGA
GCGTTTTTTGCAGCAACGCATGGCCAGGAGGTCGGCTTCGGAGGCGAGGC
GGCATGTGGACTGCCGATTTGCGCCCACTCTTGCGCAGAAGACGGATGAA
CTTCTCGTGAAAGCAGGCTGGCCTTCAGGCTTTGAAGCTCGCCAGCAACT
TTGGGAGGATTATAGGCGAGAGAAAGCAGTGGCCGTCGAGCAGGCCATGG
CGGCGGAGGAAGAGCGTTGGTTCAAGCCCGTCCTGGAGCCCAAGAGTGAA
GCTATAGTGGCGCGCATCCGAAGTCTGAGAGAGTCAAAGGGACATGAAAG
CGATGAGCGCCCCAACCTGCAGGGTTCTGTGGTGCATCGATTGGCGGTCG
AGGAGCGGGCTCGGCGGGAAGCTGCACGGGAGGCTCGCACGATGGCCGCC
TTGAGCGATTTTCATTATGAACCATCTATCAATCCCTTGTCTCGTGCGCT
GGGCCGGTCCTCCGACATCGAGGAGCTCACCTACAACTGGCGTGGAGTAG
TTGCCCGAAACAAGGCCGCCGAAGAGGCTCAGGCTCGCTTTGAAGCTGCG
TGCACATTTCAACCTGAGATAAGCAATGTGCATTCTGACGCATCATTACA
GAGACCTGCCCTTGGATCAAGATCAGGACACGTGTCAAGCAAGTCCGACA
TTGCCGAGAGTGTTGCCCGAAATCACGGAAAAGTGAAGGACCGTTCATTT
TCTGGGGCGCAACAGCCCACGTCGGCTGGGGGCGAGGACCGGCGGGGTCT
AAAGGAAGCCCAGGCGGCGGATACTCGTGCTGCCCGCGAGGCAGAAGAGC
TGAAAGCCTGTACTTGGTCGCCACTATTAACGAAAAACATGAGCCGGCCG
CGACTGGATCGCCACCAGTCCCCAGTTCTAGTACGCGGATTGGGGAAGTT
CCTAGCCCGCAGTCAGGCAGCGGCACAACAGCGTCAAGGGCAGGCATCCG
CCACGGCTGCCCTGGCCGTTGGGGGAGCCAGAATGCGGACAAATTGTGTT
CCTTCTTTGTACACAATGACGACATCTCGTCCCTTCCGGCTTAGCTCCCG
TCCACAAGATCAACGTGGCAGCCAAGCGAAGGTGCGTTCCGAATTAGAAC
GGCTAGCACGATCTTCATTAACGTTTAGACCGCAGACAATAGAACGGCGG
AAGCAGGCGGTGTTGCACAAACTATTAGAGACGAAAGCATGACGTGCAGA
ACAACATGTATTTATTAGAACTTTTATACTTAAGTGCCGCTAGATGGTGA
TTTTACCACGAAAGTGTCCCTTGCAGATATACGGAAGAGAAAAGAGTGGT
ATAAAAAACGCTCTTCGTAGGTGGGTTAGAAAACATTTTTCTACCAAAAG
AAAGAACGACGACGAGTGGGAGATTTGAACTCCCGCGGCGAAACACCATT
GCATTTCGAGTGCAACACCTTAACCACTCGGTCAACTCGTCTCGAACATC
G

Coding sequence (CDS) from alignment at CM002458.1:641987..644687-

>rna1996 ID=rna1996|Name=rna1996|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at CM002458.1:641987..644687- (Nannochloropsis gaditana)
ATGCCTGCGAGCTGCGGCAGAAAGGGCCCAGCGGGAAGGAGGGGAAAGTT
TGAACTTGAGGCCTCGCCAAGGCGGCCTTGGCGACGGCCTCGTCTGGGAA
TCAGTTTTCACGCTCGCGACCGACACATCCACAGCACTAGGAATGCCTTG
GGCATGGAATCCCATCTACTAGAGTTTGACTTAATAGAGCACCAGCTTCA
TGAGGCAGAAGCTGAGTTGGTGCGATGGCCTGATCTCTCTCCACCGGCCC
CATCAGACAGACATCGCTCTGCCTCCGGTTCACTCGGCCCGAAACCCTCA
GATCCAGTCCAGTATTCGCAACTGGCCAAAGTGGGTGGTGGTCGCACTAA
TTGTCCAGTTTTCATGGCTGCAGGCAGGTTGCCGTCCCCATCTTCAACGC
ATCAACCCTTCAAAACGCTTCGAGCGAGTGACCACGCGTTCCGCCGCCGA
CATCACACTCCGACTACTTTCGCAACTTCTGCCGCTGCACTTTCCAGGCT
AGCTCAACCACGCAACGAGATTTACAAGGAGAGAGAAAGCCTGCGTCGCG
AACAAGAAGCACTCAAAGTGGCTGAAGCGGGATGCACTTTTAAGCCCACC
CTGTGCGAAGGGACAGAAAAACGCGTTGCCGCAGCTGCAGCAGCCAGCAG
GGGAGAAGTTGTCAAGCCTTTGCCGGAGCGCTTGATGGAAAAAAAGAAAG
CCTCAGAACAGGCTAGGCGAATTAGACAGGCGAAAGTACTGGAGGAGCTG
GCGCGCGAGTGCACTTTCCGTCCGGTACTTTACACGAGCGCTTCGAGCGG
GTCTGGAGGCCGCGTGCCCCCGTCCTCCACAATTATCTCGCCGTCCCAGT
GTCCCAAGCGAGAAAAATCCTTACATGAACGCCTTGGAGACGTTCAGCGG
GCTCGCCGCGAGCACTTGGCCCGACTCCGAGCGGAGAGAGAGGAAGTAAG
GGCGGCAGAATGGACGTTCCAACCGCGCCTCTGTGGGATGACAGAGCGGA
TGGCTCGCCAACGGCGCCTTGGCAACGGCAATTCAGATACTGGCACTTTT
CAGGAAAAGGTGAAGCATCCTCTGGGACGTCAACCTAGCACTTTCTCCCG
ACTTGTGCGTGATTCTGAGCGTTTTTTGCAGCAACGCATGGCCAGGAGGT
CGGCTTCGGAGGCGAGGCGGCATGTGGACTGCCGATTTGCGCCCACTCTT
GCGCAGAAGACGGATGAACTTCTCGTGAAAGCAGGCTGGCCTTCAGGCTT
TGAAGCTCGCCAGCAACTTTGGGAGGATTATAGGCGAGAGAAAGCAGTGG
CCGTCGAGCAGGCCATGGCGGCGGAGGAAGAGCGTTGGTTCAAGCCCGTC
CTGGAGCCCAAGAGTGAAGCTATAGTGGCGCGCATCCGAAGTCTGAGAGA
GTCAAAGGGACATGAAAGCGATGAGCGCCCCAACCTGCAGGGTTCTGTGG
TGCATCGATTGGCGGTCGAGGAGCGGGCTCGGCGGGAAGCTGCACGGGAG
GCTCGCACGATGGCCGCCTTGAGCGATTTTCATTATGAACCATCTATCAA
TCCCTTGTCTCGTGCGCTGGGCCGGTCCTCCGACATCGAGGAGCTCACCT
ACAACTGGCGTGGAGTAGTTGCCCGAAACAAGGCCGCCGAAGAGGCTCAG
GCTCGCTTTGAAGCTGCGTGCACATTTCAACCTGAGATAAGCAATGTGCA
TTCTGACGCATCATTACAGAGACCTGCCCTTGGATCAAGATCAGGACACG
TGTCAAGCAAGTCCGACATTGCCGAGAGTGTTGCCCGAAATCACGGAAAA
GTGAAGGACCGTTCATTTTCTGGGGCGCAACAGCCCACGTCGGCTGGGGG
CGAGGACCGGCGGGGTCTAAAGGAAGCCCAGGCGGCGGATACTCGTGCTG
CCCGCGAGGCAGAAGAGCTGAAAGCCTGTACTTGGTCGCCACTATTAACG
AAAAACATGAGCCGGCCGCGACTGGATCGCCACCAGTCCCCAGTTCTAGT
ACGCGGATTGGGGAAGTTCCTAGCCCGCAGTCAGGCAGCGGCACAACAGC
GTCAAGGGCAGGCATCCGCCACGGCTGCCCTGGCCGTTGGGGGAGCCAGA
ATGCGGACAAATTGTGTTCCTTCTTTGTACACAATGACGACATCTCGTCC
CTTCCGGCTTAGCTCCCGTCCACAAGATCAACGTGGCAGCCAAGCGAAGG
TGCGTTCCGAATTAGAACGGCTAGCACGATCTTCATTAACGTTTAGACCG
CAGACAATAGAACGGCGGAAGCAGGCGGTGTTGCACAAACTATTAGAGAC
GAAAGCATGA

Synonyms

Publications