rna1992, rna1992 (mRNA) Nannochloropsis gaditana

Overview
Namerna1992
Unique Namerna1992
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length462
Alignment locationCM002458.1:637921..639387 +

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Properties
Property NameValue
Productaminotransferase class-iii
Orig transcript idgnl|cribi|Naga_100002g26.4947.mrna
Orig protein idgnl|cribi|Naga_100002g26.4947
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:637921..639387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g26gene1903Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1992rna1992-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28828.1cds1987Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1992 ID=rna1992|Name=rna1992|organism=Nannochloropsis gaditana|type=mRNA|length=462bp
ATGAGGGCCGTTCGACCGCCGGACTTTGACGGCGCTTTCATTTTTATTTT
CGAGGCTTGGAAACATCATTTCCCAGCAACAAGTAATATATGTACATATG
ATAGACAAGTTGCAGCGGCGTCTAGGACGGATTTTTTGTTGCTTTCCAAA
GCCTGTCACTCAAAGACAGCATTACCCAGTGACATCATAAAAGCACTTTC
CTATTCGGTGGTGTTATCACTGGGCTGTAGCTCAGCCCACACCTTGTGCA
CCCGCACGGCATCACGGACTTCAACGTGCTATGGCATGGCCGCATTTGAC
AGCACGCAACACATGCACCACATTTTAAGACAAAGAGCCATAGCAGTGAT
TGACAAATTGCGAGAGTCATATTTTATGAGACTGATTGAGCTGTCGGGAA
TCTACGTTCTTCGTGTACACCATTCCAGGGCTGAGGTGCATCACATTGTG
ACTGTCGGTTAG
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protein sequence of rna1992

>rna1992-protein ID=rna1992-protein|Name=rna1992|organism=Nannochloropsis gaditana|type=polypeptide|length=488bp
MYSSLTRATRPPVALAAAAQLPRQWLPRAFLATSTRMSAPSTAPETNCNI
DQATLGAFWMPFTANKAFKRSPRILAKAKGMHYWTEDGHKVLDGTAGLWC
VNAGHCNERIVSAIQKQAAALDFAPTFNMGHPLAFEYAHRLCQELMPGKG
LDQVFFTMCGSTAVDTALKVALAYHKARGEGSRFRLIGRERAYHGVGFGG
ISVGGMLPNRRAFGPMLPGVDHLRTTYDREHQAFSKGQPEWGAHLAEDLE
RLVGLHDASTIAAVIVEPVSGSAGVLVPPYGYLKRLREICDAHGILLIFD
EVITAFGRLGKGMGAEYFGVIPDMVTCAKGLTNAAVPAGATFVQKHVYDT
FMGATPGDGIELFHGYTYSGHPLAMAAGLATLDVYQDEGLFERAAALAPY
WEETLHALKGHPHVVDIRNLGLMGAVELVPRAGKPGQRAFQVFTTALHKG
VMVRVTGETIALSPPLIVEKGQIDQIVTTLSQALHEVA
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mRNA from alignment at CM002458.1:637921..639387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1992 ID=rna1992|Name=rna1992|organism=Nannochloropsis gaditana|type=mRNA|length=1467bp|location=Sequence derived from alignment at CM002458.1:637921..639387+ (Nannochloropsis gaditana)
ATGTACTCCTCCCTAACGAGGGCAACAAGGCCACCCGTTGCGTTGGCAGC
TGCGGCGCAATTGCCTAGGCAATGGCTACCACGCGCTTTTTTGGCAACAT
CGACTCGCATGTCCGCACCATCCACCGCACCAGAGACGAATTGCAATATA
GATCAGGCCACGCTGGGGGCCTTCTGGATGCCTTTTACGGCTAATAAAGC
CTTCAAGCGATCCCCTCGTAtcttggccaaggccaaaGGCATGCATTATT
GGACCGAAGACGGTCACAAAGTGCTAGATGGTACGGCTGGTCTATGGTGT
GTCAATGCAGGCCACTGTAATGAACGCATTGTGAGTGCCATTCAAAAGCA
GGCTGCAGCACTTGACTTTGCGCCGACCTTCAACATGGGCCATCCCCTGG
CGTTCGAGTACGCACACCGCCTGTGTCAGGAGCTCATGCCAGGCAAAGGT
TTGGATCAAGTATTCTTCACCATGTGTGGCTCTACAGCGGTAGACACAGC
TTTGAAGGTCGCCCTTGCTTACCATAAAGCTCGAGGAGAGGGGTCTCGTT
TTCGGCTTATCGGTCGCGAGCGCGCCTACCATGGCGTGGGCTTTGGAGGC
ATTTCAGTGGGTGGCATGTTGCCTAATCGTCGAGCGTTCGGACCAATGTT
GCCTGGTGTTGATCACCTTCGAACAACCTACGACCGGGAGCACCAAGCGT
TTTCGAAGGGGCAGCCGGAGTGGGGTGCTCATCTGGCGGAGGACCTGGAG
CGACTTGTGGGCCTGCATGACGCGTCCACCATTGCTGCGGTGATCGTTGA
ACCTGTTTCAGGGTCAGCAGGCGTGTTAGTCCCGCCTTACGGGTATTTGA
AGCGGTTGCGTGAGATCTGCGATGCGCACGGTATCCTGCTCATTTTCGAT
GAGGTGATTACCGCTTTCGGACGTCTGGGCAAGGGTATGGGTGCGGAATA
CTTCGGCGTTATTCCCGATATGGTAACTTGTGCCAAGGGTTTGACAAATG
CAGCGGTGCCGGCCGGTGCTACATTCGTCCAGAAGCACGTGTACGACACC
TTCATGGGGGCAACCCCGGGAGACGGGATTGAGCTTTTCCACGGTTACAC
GTATTCCGGCCATCCACTCGCTATGGCTGCCGGCTTGGCCACACTCGATG
TCTATCAGGATGAGGGCTTGTTTGAGAGGGCGGCAGCTCTTGCGCCCTAC
TGGGAGGAGACGCTCCACGCGCTGAAGGGTCATCCCCACGTTGTGGACAT
TCGTAACCTGGGGCTtatgggggcggtggaactGGTGCCGAGGGCCGGTA
AGCCTGGTCAACGAGCATTTCAGGTTTTTACCACTGCCCTGCACAAGGGT
GTCATGGTTCGAGTTACTGGCGAGACGATCGCTCTCTCTCCGCCTCTGAT
TGTTGAAAAAGGCCAGATCGACCAGATCGTCACTACTCTAAGCCAGGCGT
TGCATGAGGTAGCCTAG
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Coding sequence (CDS) from alignment at CM002458.1:637921..639387+

>rna1992 ID=rna1992|Name=rna1992|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002458.1:637921..639387+ (Nannochloropsis gaditana)
ATGTACTCCTCCCTAACGAGGGCAACAAGGCCACCCGTTGCGTTGGCAGC
TGCGGCGCAATTGCCTAGGCAATGGCTACCACGCGCTTTTTTGGCAACAT
CGACTCGCATGTCCGCACCATCCACCGCACCAGAGACGAATTGCAATATA
GATCAGGCCACGCTGGGGGCCTTCTGGATGCCTTTTACGGCTAATAAAGC
CTTCAAGCGATCCCCTCGTAtcttggccaaggccaaaGGCATGCATTATT
GGACCGAAGACGGTCACAAAGTGCTAGATGGTACGGCTGGTCTATGGTGT
GTCAATGCAGGCCACTGTAATGAACGCATTGTGAGTGCCATTCAAAAGCA
GGCTGCAGCACTTGACTTTGCGCCGACCTTCAACATGGGCCATCCCCTGG
CGTTCGAGTACGCACACCGCCTGTGTCAGGAGCTCATGCCAGGCAAAGGT
TTGGATCAAGTATTCTTCACCATGTGTGGCTCTACAGCGGTAGACACAGC
TTTGAAGGTCGCCCTTGCTTACCATAAAGCTCGAGGAGAGGGGTCTCGTT
TTCGGCTTATCGGTCGCGAGCGCGCCTACCATGGCGTGGGCTTTGGAGGC
ATTTCAGTGGGTGGCATGTTGCCTAATCGTCGAGCGTTCGGACCAATGTT
GCCTGGTGTTGATCACCTTCGAACAACCTACGACCGGGAGCACCAAGCGT
TTTCGAAGGGGCAGCCGGAGTGGGGTGCTCATCTGGCGGAGGACCTGGAG
CGACTTGTGGGCCTGCATGACGCGTCCACCATTGCTGCGGTGATCGTTGA
ACCTGTTTCAGGGTCAGCAGGCGTGTTAGTCCCGCCTTACGGGTATTTGA
AGCGGTTGCGTGAGATCTGCGATGCGCACGGTATCCTGCTCATTTTCGAT
GAGGTGATTACCGCTTTCGGACGTCTGGGCAAGGGTATGGGTGCGGAATA
CTTCGGCGTTATTCCCGATATGGTAACTTGTGCCAAGGGTTTGACAAATG
CAGCGGTGCCGGCCGGTGCTACATTCGTCCAGAAGCACGTGTACGACACC
TTCATGGGGGCAACCCCGGGAGACGGGATTGAGCTTTTCCACGGTTACAC
GTATTCCGGCCATCCACTCGCTATGGCTGCCGGCTTGGCCACACTCGATG
TCTATCAGGATGAGGGCTTGTTTGAGAGGGCGGCAGCTCTTGCGCCCTAC
TGGGAGGAGACGCTCCACGCGCTGAAGGGTCATCCCCACGTTGTGGACAT
TCGTAACCTGGGGCTtatgggggcggtggaactGGTGCCGAGGGCCGGTA
AGCCTGGTCAACGAGCATTTCAGGTTTTTACCACTGCCCTGCACAAGGGT
GTCATGGTTCGAGTTACTGGCGAGACGATCGCTCTCTCTCCGCCTCTGAT
TGTTGAAAAAGGCCAGATCGACCAGATCGTCACTACTCTAAGCCAGGCGT
TGCATGAGGTAGCCTAG
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Synonyms
Publications