rna1986, rna1986 (mRNA) Nannochloropsis gaditana

Overview
Namerna1986
Unique Namerna1986
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1841
Alignment locationCM002458.1:625716..626878 -

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Properties
Property NameValue
Productg-protein complex alpha subunit
Orig transcript idgnl|cribi|Naga_100002g32.4813.mrna
Orig protein idgnl|cribi|Naga_100002g32.4813
GeneGPA1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:625716..626878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GPA1gene1897Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1986rna1986-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28694.1cds1981Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1986 ID=rna1986|Name=rna1986|organism=Nannochloropsis gaditana|type=mRNA|length=1841bp
CGCCGCGGCATAAAACATGCTCGTGAAATGGGAGCAGTAAGGACGGCTTA
GCAGCTGTAGTAGGTGCCAGTACCTGCACTGTCGGCGGCGACAAGGCAAG
GGCAACAGGGGCTTGGAGACCAGTTGAGGATAACAAGGGATGCGCGGCCT
GCACGCCGCACAAATGTCCATCATCGATCTTCCTTAACGTAGTCGGAATT
CCAGCCTGCTGTCGATATCAGGCATTTTGTTGTGGTTTACCTAGTGCTCC
CGGCATACTCTGTGACCCCCTCATTTTCATCGAGGACCAGCTTTCCTAAC
TTTGATTCCTTGTAACGTCCAGGCAGCTCACGTCCAGTGCGTACCAATCC
CGCGCCCCGTCCAGAGTGCGAAGCACAACGGCCGACAAAAACAAGGTGGC
ACGCAATATTTGGAAATGAATACAGAGGGAAATCTTGGCTTGCGTGGGGT
TCGTCGCCCGCAAATTATCGGGGACGCCCTTGATGTCTTTTTCGTGAAGC
TGAGGAGGCTTCTTGTCTCATGTTTTCGCATCGTTCTTAGATATACACGA
GAAATTGACTTTAAACTCCTTGATATTCTCACAGCATGCCATTGACATTG
AAAGTCAATGGCCCGGGTGGAAAAAGTGCTATTTTAAAGGGTTTGAAGGA
TTCGGCAACGCTGCAGCAGCTTCAAATAAAAATCGAGGAGCTCTTGGGGG
TCCCAATGGCTCAGCAGAAGCTCCGGGCGGGATTCCCCCCCAAAGACATG
ACATTGCAGGATTTAACAGCTGAATTGACTTCTTTAGGGATTCAGACCGG
GAGCGCAATAACAGTCGTCAAAGAAGACACACAGTTTACTTCGGGTGATA
AGGCTCCCATTCCTGTCACGTTGCCTGGGGCCCAGCAAATAATCGACATG
GGGTTTTCTGTTGCCGTAGCATTGAAAGCTCTAGAGGTATCCCATGGGGA
AGTTGAAAATGCTCTGGATCTATGCGTGAACGGTATTATCACAGATGAGT
CCCTGGAACATGTTCCGACAGCGCCCCCCGTTCCGGTCACTTCGCACGGT
GGGATGACCACGGCGAACAGAGTAATGGTTAGGCGTGTAATAGATGCAGA
CAATAGTTGTCTATTTAATGCCGTGGGTTACTGCATGGAGAAGAATCGGA
GAATAGGTCCTAAGCTGCGGAAAATCATTGCAGATTGCGTGCGAAACTCG
CCCGATGTGTACACAGAGGCAGTGCTCGGAAAAGCACCCAAACAGTACTC
AGATTGGATTCAAGACCCTGCTCAATGGGGCGGCGAAATAGAGTTGTTCA
TCCTCTCGCAATATTATGGCTGCGAAGTTGTAGCAATTGAGATTAAAAGT
GCACACGCTTATGTGTATGGGGAGGGGAAAAACTATTCACGCCGCATATA
TTTGCTGTATGATGGGGTGCACTACGATGCTTTGGCCATGGCGGCGGGAT
CTCCCACTGCGCCCGAGTCATTGGACATGACTCAGTTTCCTGCAGGGGAC
GAAAGCAGCAAGCAGGCAGCCCTGGCGGTGGCCGCCGAGTTAAAAGAGGG
TCGACAATTTGTTGATCTGCTTGGCTGCACCTTGCGGTGTATGGTGTGCA
ATAAGGGCCTTTCAGGGCAGGAGGAAGCACTGCTCCATGCTCGTGAAACG
AATCATCAGAATTTTGGTGAATACAAGTCGTCATGAACATGGACAAGTGA
TTTGCACTTGTCATACCACAAAATATGAATGCTGTACAGGAGAGAGCATC
TTTCCAGCAAAATACCATGTTTGCAAGTCATAGAAAGTTAAGAGCAATAA
ATTTAAGTATGTGATTGATATATGAACGGTTGATGTATCGG
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protein sequence of rna1986

>rna1986-protein ID=rna1986-protein|Name=rna1986|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MGNLCGSISADDIEAAKISKDVDQANAAAFKKEQEKIKLLLLGAGESGKS
TIFKQMKLLYGAGTTLEDKKMMTPVVYANTICAMRILLEQCKQFGYDSEI
LDQDAIDLINTIPDTDIDLKIGSAIKTLWKDDAIQKTWARRSEFQIVESV
KYYFNKIDEISEPDYLASDDDILYARVRTSGIVTERYMIDGTMFEMYDVG
GQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDSSTNRMIEAIQLFKE
ICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGVPQFSDYKGCLGDFDAG
VDYFVNLFLGVNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRGNLK
DSGFM
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mRNA from alignment at CM002458.1:625716..626878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1986 ID=rna1986|Name=rna1986|organism=Nannochloropsis gaditana|type=mRNA|length=1163bp|location=Sequence derived from alignment at CM002458.1:625716..626878- (Nannochloropsis gaditana)
ATGGGCAACCTGTGTGGATCCATCTCCGCTGACGATATCGAGGCCGCAAA
AATAAGTAAAGATGTCGATCAGGCCAACGCAGCAGCTTTTAAGAAAGAGC
AAGAGAAAATAAAGCTCCTCCTTCTGGGAGCCGGGGAGTCTGGAAAGAGC
ACTATCTTCAAGCAAATGAAACTGCTCTATGGTGCAGGAACTACCCTTGA
GGACAAGAAGATGATGACTCCTGTCGTGTATGCTAATACGATTTGTGCGA
TGAGGATCCTTCTCGAGCAGTGCAAGCAATTTGGCTACGACTCTGAGGTA
AGAGAGCCCTGGAGTTGAAGGCTTGTCTGGAGTCGAGTAGGGCTTCTACC
GGTGAAATTTCGCCCCACTCATTTCATTTTTTACCTGTAAAGATTTTGGA
TCAAGATGCTATAGACTTGATCAACACGATCCCAGACACGGATATCGACT
TAAAAATTGGATCAGCCATAAAAACTCTGTGGAAGGATGATGCGATCCAA
AAGACCTGGGCGCGGCGCTCTGAATTTCAAATCGTCGAATCGGTCAAGTA
TTACTTCAATAAAATTGATGAAATCTCAGAACCTGACTATCTGGCTTCCG
ATGATGACATTTTATACGCACGCGTACGGACATCAGGAATCGTAACGGAG
CGATACATGATTGACGGTACCATGTTTGAGATGTATGATGTCGGAGGACA
GCGAAACGAGAGGAAAAAATGGATACATTGTTTCGACAATGTCACAGCTA
TCATTTTTGTCGCTGCCCTATCTGAATATGACCAGGTTCTGTTTGAGGAT
TCCTCCACAAACAGAATGATCGAGGCTATCCAGCTTTTCAAAGAAATTTG
CAACAACAAATTCTTTGCCAATTCTTCCATGCTTCTTTTTCTCAACAAGA
AAGATCTTTTTGCGGAAAAAATTTGGGTCAAGGATATAAAGGGTGTACCT
CAATTTTCAGATTACAAGGGGTGCTTAGGCGACTTTGACGCTGGTGTGGA
CTATTTTGTGAATTTGTTTCTCGGTGTCAATGACAGGCCTAATGAAAAGA
TTATTTACAATCATGTTACATGTGCAACAGACACGAAAAATGTAGAGGTA
GTCATGAACGCGTGTAAAGACATCATCACACGTGGCAATCTTAAAGACAG
CGGATTTATGTAG
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Coding sequence (CDS) from alignment at CM002458.1:625716..626878-

>rna1986 ID=rna1986|Name=rna1986|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002458.1:625716..626878- (Nannochloropsis gaditana)
ATTTTGGATCAAGATGCTATAGACTTGATCAACACGATCCCAGACACGGA
TATCGACTTAAAAATTGGATCAGCCATAAAAACTCTGTGGAAGGATGATG
CGATCCAAAAGACCTGGGCGCGGCGCTCTGAATTTCAAATCGTCGAATCG
GTCAAGTATTACTTCAATAAAATTGATGAAATCTCAGAACCTGACTATCT
GGCTTCCGATGATGACATTTTATACGCACGCGTACGGACATCAGGAATCG
TAACGGAGCGATACATGATTGACGGTACCATGTTTGAGATGTATGATGTC
GGAGGACAGCGAAACGAGAGGAAAAAATGGATACATTGTTTCGACAATGT
CACAGCTATCATTTTTGTCGCTGCCCTATCTGAATATGACCAGGTTCTGT
TTGAGGATTCCTCCACAAACAGAATGATCGAGGCTATCCAGCTTTTCAAA
GAAATTTGCAACAACAAATTCTTTGCCAATTCTTCCATGCTTCTTTTTCT
CAACAAGAAAGATCTTTTTGCGGAAAAAATTTGGGTCAAGGATATAAAGG
GTGTACCTCAATTTTCAGATTACAAGGGGTGCTTAGGCGACTTTGACGCT
GGTGTGGACTATTTTGTGAATTTGTTTCTCGGTGTCAATGACAGGCCTAA
TGAAAAGATTATTTACAATCATGTTACATGTGCAACAGACACGAAAAATG
TAGAGGTAGTCATGAACGCGTGTAAAGACATCATCACACGTGGCAATCTT
AAAGACAGCGGATTTATGTAGATGGGCAACCTGTGTGGATCCATCTCCGC
TGACGATATCGAGGCCGCAAAAATAAGTAAAGATGTCGATCAGGCCAACG
CAGCAGCTTTTAAGAAAGAGCAAGAGAAAATAAAGCTCCTCCTTCTGGGA
GCCGGGGAGTCTGGAAAGAGCACTATCTTCAAGCAAATGAAACTGCTCTA
TGGTGCAGGAACTACCCTTGAGGACAAGAAGATGATGACTCCTGTCGTGT
ATGCTAATACGATTTGTGCGATGAGGATCCTTCTCGAGCAGTGCAAGCAA
TTTGGCTACGACTCTGAGATTTTGGATCAAGATGCTATAGACTTGATCAA
CACGATCCCAGACACGGATATCGACTTAAAAATTGGATCAGCCATAAAAA
CTCTGTGGAAGGATGATGCGATCCAAAAGACCTGGGCGCGGCGCTCTGAA
TTTCAAATCGTCGAATCGGTCAAGTATTACTTCAATAAAATTGATGAAAT
CTCAGAACCTGACTATCTGGCTTCCGATGATGACATTTTATACGCACGCG
TACGGACATCAGGAATCGTAACGGAGCGATACATGATTGACGGTACCATG
TTTGAGATGTATGATGTCGGAGGACAGCGAAACGAGAGGAAAAAATGGAT
ACATTGTTTCGACAATGTCACAGCTATCATTTTTGTCGCTGCCCTATCTG
AATATGACCAGGTTCTGTTTGAGGATTCCTCCACAAACAGAATGATCGAG
GCTATCCAGCTTTTCAAAGAAATTTGCAACAACAAATTCTTTGCCAATTC
TTCCATGCTTCTTTTTCTCAACAAGAAAGATCTTTTTGCGGAAAAAATTT
GGGTCAAGGATATAAAGGGTGTACCTCAATTTTCAGATTACAAGGGGTGC
TTAGGCGACTTTGACGCTGGTGTGGACTATTTTGTGAATTTGTTTCTCGG
TGTCAATGACAGGCCTAATGAAAAGATTATTTACAATCATGTTACATGTG
CAACAGACACGAAAAATGTAGAGGTAGTCATGAACGCGTGTAAAGACATC
ATCACACGTGGCAATCTTAAAGACAGCGGATTTATGTAGATGGGCAACCT
GTGTGGATCCATCTCCGCTGACGATATCGAGGCCGCAAAAATAAGTAAAG
ATGTCGATCAGGCCAACGCAGCAGCTTTTAAGAAAGAGCAAGAGAAAATA
AAGCTCCTCCTTCTGGGAGCCGGGGAGTCTGGAAAGAGCACTATCTTCAA
GCAAATGAAACTGCTCTATGGTGCAGGAACTACCCTTGAGGACAAGAAGA
TGATGACTCCTGTCGTGTATGCTAATACGATTTGTGCGATGAGGATCCTT
CTCGAGCAGTGCAAGCAATTTGGCTACGACTCTGAG
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Synonyms
Publications