rna198, rna198 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna198
Unique Name	rna198
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1107
Alignment location	CM002455.1:515468..517599 -

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Properties


Property Name	Value
Product	dhhc zinc finger domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100013g19.9803.mrna
Orig protein id	gnl\|cribi\|Naga_100013g19.9803
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:515468..517599 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g19	gene189	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna198	rna198-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30515.1	cds198	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:515468..517599-
coding sequence from alignment at CM002455.1:515468..517599-

mRNA sequence

>rna198 ID=rna198|Name=rna198|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp
AGTGCCCCTTCGTTCGCGGCGGCAACCCGCCACGGCAGCATATGCGCTCT
TTACGGCAACAATGAAAAGTACTTACACTTACAAACACAGCGAAAGGCTA
CGCGCTGAGCAGGTGGCAGTATGATTCGTGGAAAAGCCCTACAGCCACGA
AGCGTGACTTTCTTGGCCTTACTGTCTCTGCTGTGCCCGATCCTGCTCCC
TACGCATGCTTTTCTCCACACCTGTCGATTGTCTTCTCCCCACGCACGAA
GCTTTGCTGTCAATAGTATATCTACTTCCGCATCTTTGAGGGAAAATCAA
GATGAAAAATATATGGCCTTGGCGCTAATTGAGGCTCAGGCGGCTTTCGC
AGCCAAAGAAGTTCCAGTTGGCGCCGTCCTCGTCTCGAGTGAGGGTCAAG
TCCTTGCGACAGGGCGCAATCGAGTGGAAGCCACAGGAGACGCAAGTGCA
CACGCTGAATTAGAATGTCTGAGAGCAGCCGCGCTTGGTGCAGCTCGCCA
CGGCCAAGGTAAATGGCGTATGTTAAATTGTACGCTGTACGTGACATTAG
AGCCATGCTTAATGTGTTTGGGCGCGGTGCAAAGCTTTCGGGTTCAACGC
GTGGTGTATGGAGCACGTAGTACATTACTTGGAGCCATTGAGAGCTATGT
GAAGGTATTGGAGCAGGCACCGCATCCGTTTCATTCCACTCTAGAGGTCA
AAGGAGGGGTCCATGCGGCGCAATGTGGTGATTTGATGAAGAGATTTTTC
GCAGAGCGTCGGCTTGAAAGCGAGAGAATGGCGACAAAGGTGCGCGAGGC
ACAGAGAGAGGAGAAAAGATTTGATACTGTAACATAGCGATTGTTCATTA
AATTCGAGGTGATGTAAATATATACAAAAGTAGCGGCCAATGTGTCACAC
ACGAGGGCCGAGTTAAGTTGTGCTTATTGTGGTGTCATTTCTCATGATTT
CCTCTCTCCTCACCATATGTGGAAATAAGAGAGCATTGCATCACAAGCCT
TCCACAGAAAACTTGATTGAAGGTCTCTCGCCTCCCTGGCAGCTCTTGTC
ACTGTCTCACCCACCCCGCACGTCAGCAGACTGAGAAGAAGCGAAGAGCA
TGCACAA

protein sequence of rna198

>rna198-protein ID=rna198-protein|Name=rna198|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MSVVTILVVYMTLIAFLIWVCVLADPNSDTLGGRLNVLLTEEIPTRITFN
LRRRLPSKVFDALAKAYDYIVRQRNPILQCLYLLLFLGSFATYLYEGWGR
IPLGDLALSVALVLACLASFVVACSVPAGTISPSTWERYDNYKPDNVIYV
AGRVCPTCDVVKLARSKHCRLCGVCQSRFDHHCGWLNQCVGEVNYRHFLF
FLALHSCTFLYGSSRLWGILRREMIKNKLWDATFYSPSSGQTVGSSPLVV
CQYLVVHEGAVCGVLALAFVMAIVLAGFLLYHLWLAGQNTTTNETFKWAE
VRLKVKIERSQARRAHEASGGALPLRRIADPVNSYNISLYENLMEVLFPR
SERRAQNSTGRKAVSRVATESEKLSTEAREKIE

mRNA from alignment at CM002455.1:515468..517599-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna198 ID=rna198|Name=rna198|organism=Nannochloropsis gaditana|type=mRNA|length=2132bp|location=Sequence derived from alignment at CM002455.1:515468..517599- (Nannochloropsis gaditana)
CCCCAAAAAAGGACAACCTATATTTCTTCGGCACGGCCACTCAATTCATC
AGAGGCTCGTCCCACACGCAGGTGTGCCAGCGCCGCTTGCATTGGCTTGG
AGGAAAAAAGAAGGGGAGGGGCAGCCTATAAATTTTATGGCATACAGGGA
TACCAGCACTTCCGCAAGCTTGTGCTGAACTTTGTACACAAGTCAAAAAG
CTCCGACACCAGACCAGGAAATAGAAAACAAGGAAGAAGATATGTATTCA
GCATCCGGCACAATTTATCTACTAAAATTTCGATAGGTCGAAGCAAAGTT
CAAGATAAATGAGTGTAGTCACCATTCTTGTTGTCTACATGACCCTCATC
GCATTTTTGATCTGGGTCTGCGTTCTTGCGGATCCCAACTCTGACACACT
AGGTAATGTCATGGCTATGGCTCCAAGTACAGTCTAGGCGGTTTTTGGTG
GTGGTATGGTTGCTTCTTCCGCGTAGAGACGTGAAGCTGCCGAGTCACGG
GACAGGACAAACCTTGTCGAATACCAGTCATCCATCTATTTCCACTCACT
GCCAACAGGTGGAAGGCTCAACGTCTTACTCACGGAGGAGATCCCCACTC
GCATCACATTCAATCTTCGCCGCCGCCTCCCCTCGAAAGTCTTCGACGCC
CTCGCAAAGGCCTATGACTACATCGTCCGTCAACGCAACCCCATCCTGCA
ATGCCTATACCTGCTTCTGTTCCTGGGCTCTTTCGCGACCTACTTGTACG
AGGGATGGGGTCGCATACCATTGGGGGACCTCGCCCTTTCCGTCGCCCTT
GTCCTGGCGTGCCTCGCGTCTTTCGTTGTCGCCTGCTCGGTGCCTGCCGG
GACCATCTCGCCCTCCACATGGGAGCGATACGACAACTACAAGCCAGACA
ACGTCATTTACGTCGCAGGGAGAGTCTGCCCCACATGCGACGTCGTGAAA
CTGGCACGGTCGAAGCATTGCCGCTTGTGTGGAGTGTGCCAGTCTCGCTT
CGACCATCACTGCGGCTGGCTGAACCAGTGCGTGGGTGAGGTCAACTACC
GGCATTTCCTCTTCTTCCTCGCCCTTCACAGCTGCACATTTCTGTACGGC
AGTTCTCGACTTTGGGGGATCCTCCGTAGGGAGATGATTAAAAACAAGCT
GTGGGATGCGACCTTCTACAGCCCTTCGTCCGGGCAGACGGTCGGGTCGA
GTCCCCTTGTCGTGTGTCAGTACCTTGTAGTGCATGAGGGCGCGGTCTGC
GGGGTCCTTGCCCTCGCCTTTGTCATGGCTATTGTCCTGGCAGGGTTTTT
GCTTTACCACCTGTGGCTTGCGGGGCAGAACACGACAACGAACGAAACTT
TCAAGTGGGCGGAGGTCCGATTGAAAGTGAAAATTGAGCGAAGCCAAGCG
CGGAGGGCTCACGAAGCCTCAGGTACGCGACGGGTAGTTTGAGGGGGAAG
TAGAGGCAGCAGTCATGCGCATACAATAGAGATAACACGCTGAATGTGGT
TCGTGTACCAAGCATCAGGGGTATCGCGCCCTCGTGGCGCCTGAAACGCC
TTCCCTCACTGTCCTCCACGACAGGTGGCGCTCTTCCGTTACGCCGCATC
GCCGACCCTGTCAACTCCTACAACATCTCACTTTACGAAAACCTCATGGA
GGTGCTTTTTCCGCGGAGCGAAAGGCGGGCCCAAAATTCGACGGGACGAA
AGGCCGTATCGCGGGTAGCGACAGAGTCAGAAAAGCTCTCCACGGAGGCC
AGGGAAAAGATCGAGTAAAAAGAAATTATTACAGCAAATATGCCCCGCGG
TTGTCTTGACAGATAAGCGCAGCTTCGGCGCGGATCACTAGATTGTGCAT
GCTCTTCGCTTCTTCTCAGTCTGCTGACGTGCGGGGTGGGTGAGACAGTG
ACAAGAGCTGCCAGGGAGGCGAGAGACCTTCAATCAAGTTTTCTGTGGAA
GGCTTGTGATGCAATGCTCTCTTATTTCCACATATGGTGAGGAGAGAGGA
AATCATGAGAAATGACACCACAATAAGCACAACTTAACTCGGCCCTCGTG
TGTGACACATTGGCCGCTACTTTTGTATATATTTACATCACCTCGAATTT
AATGAACAATCGCTATGTTACAGTATCAAATC

Coding sequence (CDS) from alignment at CM002455.1:515468..517599-

>rna198 ID=rna198|Name=rna198|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at CM002455.1:515468..517599- (Nannochloropsis gaditana)
GTGGCGCTCTTCCGTTACGCCGCATCGCCGACCCTGTCAACTCCTACAAC
ATCTCACTTTACGAAAACCTCATGGAGGTGCTTTTTCCGCGGAGCGAAAG
GCGGGCCCAAAATTCGACGGGACGAAAGGCCGTATCGCGGGTAGCGACAG
AGTCAGAAAAGCTCTCCACGGAGGCCAGGGAAAAGATCGAGTAAGTGGAA
GGCTCAACGTCTTACTCACGGAGGAGATCCCCACTCGCATCACATTCAAT
CTTCGCCGCCGCCTCCCCTCGAAAGTCTTCGACGCCCTCGCAAAGGCCTA
TGACTACATCGTCCGTCAACGCAACCCCATCCTGCAATGCCTATACCTGC
TTCTGTTCCTGGGCTCTTTCGCGACCTACTTGTACGAGGGATGGGGTCGC
ATACCATTGGGGGACCTCGCCCTTTCCGTCGCCCTTGTCCTGGCGTGCCT
CGCGTCTTTCGTTGTCGCCTGCTCGGTGCCTGCCGGGACCATCTCGCCCT
CCACATGGGAGCGATACGACAACTACAAGCCAGACAACGTCATTTACGTC
GCAGGGAGAGTCTGCCCCACATGCGACGTCGTGAAACTGGCACGGTCGAA
GCATTGCCGCTTGTGTGGAGTGTGCCAGTCTCGCTTCGACCATCACTGCG
GCTGGCTGAACCAGTGCGTGGGTGAGGTCAACTACCGGCATTTCCTCTTC
TTCCTCGCCCTTCACAGCTGCACATTTCTGTACGGCAGTTCTCGACTTTG
GGGGATCCTCCGTAGGGAGATGATTAAAAACAAGCTGTGGGATGCGACCT
TCTACAGCCCTTCGTCCGGGCAGACGGTCGGGTCGAGTCCCCTTGTCGTG
TGTCAGTACCTTGTAGTGCATGAGGGCGCGGTCTGCGGGGTCCTTGCCCT
CGCCTTTGTCATGGCTATTGTCCTGGCAGGGTTTTTGCTTTACCACCTGT
GGCTTGCGGGGCAGAACACGACAACGAACGAAACTTTCAAGTGGGCGGAG
GTCCGATTGAAAGTGAAAATTGAGCGAAGCCAAGCGCGGAGGGCTCACGA
AGCCTCAGATGAGTGTAGTCACCATTCTTGTTGTCTACATGACCCTCATC
GCATTTTTGATCTGGGTCTGCGTTCTTGCGGATCCCAACTCTGACACACT
AGGTGGCGCTCTTCCGTTACGCCGCATCGCCGACCCTGTCAACTCCTACA
ACATCTCACTTTACGAAAACCTCATGGAGGTGCTTTTTCCGCGGAGCGAA
AGGCGGGCCCAAAATTCGACGGGACGAAAGGCCGTATCGCGGGTAGCGAC
AGAGTCAGAAAAGCTCTCCACGGAGGCCAGGGAAAAGATCGAGTAAGTGG
AAGGCTCAACGTCTTACTCACGGAGGAGATCCCCACTCGCATCACATTCA
ATCTTCGCCGCCGCCTCCCCTCGAAAGTCTTCGACGCCCTCGCAAAGGCC
TATGACTACATCGTCCGTCAACGCAACCCCATCCTGCAATGCCTATACCT
GCTTCTGTTCCTGGGCTCTTTCGCGACCTACTTGTACGAGGGATGGGGTC
GCATACCATTGGGGGACCTCGCCCTTTCCGTCGCCCTTGTCCTGGCGTGC
CTCGCGTCTTTCGTTGTCGCCTGCTCGGTGCCTGCCGGGACCATCTCGCC
CTCCACATGGGAGCGATACGACAACTACAAGCCAGACAACGTCATTTACG
TCGCAGGGAGAGTCTGCCCCACATGCGACGTCGTGAAACTGGCACGGTCG
AAGCATTGCCGCTTGTGTGGAGTGTGCCAGTCTCGCTTCGACCATCACTG
CGGCTGGCTGAACCAGTGCGTGGGTGAGGTCAACTACCGGCATTTCCTCT
TCTTCCTCGCCCTTCACAGCTGCACATTTCTGTACGGCAGTTCTCGACTT
TGGGGGATCCTCCGTAGGGAGATGATTAAAAACAAGCTGTGGGATGCGAC
CTTCTACAGCCCTTCGTCCGGGCAGACGGTCGGGTCGAGTCCCCTTGTCG
TGTGTCAGTACCTTGTAGTGCATGAGGGCGCGGTCTGCGGGGTCCTTGCC
CTCGCCTTTGTCATGGCTATTGTCCTGGCAGGGTTTTTGCTTTACCACCT
GTGGCTTGCGGGGCAGAACACGACAACGAACGAAACTTTCAAGTGGGCGG
AGGTCCGATTGAAAGTGAAAATTGAGCGAAGCCAAGCGCGGAGGGCTCAC
GAAGCCTCAGATGAGTGTAGTCACCATTCTTGTTGTCTACATGACCCTCA
TCGCATTTTTGATCTGGGTCTGCGTTCTTGCGGATCCCAACTCTGACACA
CTAGGTGGCGCTCTTCCGTTACGCCGCATCGCCGACCCTGTCAACTCCTA
CAACATCTCACTTTACGAAAACCTCATGGAGGTGCTTTTTCCGCGGAGCG
AAAGGCGGGCCCAAAATTCGACGGGACGAAAGGCCGTATCGCGGGTAGCG
ACAGAGTCAGAAAAGCTCTCCACGGAGGCCAGGGAAAAGATCGAGTAAGT
GGAAGGCTCAACGTCTTACTCACGGAGGAGATCCCCACTCGCATCACATT
CAATCTTCGCCGCCGCCTCCCCTCGAAAGTCTTCGACGCCCTCGCAAAGG
CCTATGACTACATCGTCCGTCAACGCAACCCCATCCTGCAATGCCTATAC
CTGCTTCTGTTCCTGGGCTCTTTCGCGACCTACTTGTACGAGGGATGGGG
TCGCATACCATTGGGGGACCTCGCCCTTTCCGTCGCCCTTGTCCTGGCGT
GCCTCGCGTCTTTCGTTGTCGCCTGCTCGGTGCCTGCCGGGACCATCTCG
CCCTCCACATGGGAGCGATACGACAACTACAAGCCAGACAACGTCATTTA
CGTCGCAGGGAGAGTCTGCCCCACATGCGACGTCGTGAAACTGGCACGGT
CGAAGCATTGCCGCTTGTGTGGAGTGTGCCAGTCTCGCTTCGACCATCAC
TGCGGCTGGCTGAACCAGTGCGTGGGTGAGGTCAACTACCGGCATTTCCT
CTTCTTCCTCGCCCTTCACAGCTGCACATTTCTGTACGGCAGTTCTCGAC
TTTGGGGGATCCTCCGTAGGGAGATGATTAAAAACAAGCTGTGGGATGCG
ACCTTCTACAGCCCTTCGTCCGGGCAGACGGTCGGGTCGAGTCCCCTTGT
CGTGTGTCAGTACCTTGTAGTGCATGAGGGCGCGGTCTGCGGGGTCCTTG
CCCTCGCCTTTGTCATGGCTATTGTCCTGGCAGGGTTTTTGCTTTACCAC
CTGTGGCTTGCGGGGCAGAACACGACAACGAACGAAACTTTCAAGTGGGC
GGAGGTCCGATTGAAAGTGAAAATTGAGCGAAGCCAAGCGCGGAGGGCTC
ACGAAGCCTCAGATGAGTGTAGTCACCATTCTTGTTGTCTACATGACCCT
CATCGCATTTTTGATCTGGGTCTGCGTTCTTGCGGATCCCAACTCTGACA
CACTAG

Synonyms

Publications