rna1977, rna1977 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1977
Unique Name	rna1977
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2685
Alignment location	CM002458.1:609277..612531 +

Link to JBrowse

Properties


Property Name	Value
Product	3-phosphoinositide-dependent protein
Orig transcript id	gnl\|cribi\|Naga_100002g41.4831.mrna
Orig protein id	gnl\|cribi\|Naga_100002g41.4831
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:609277..612531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g41	gene1888	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1977	rna1977-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28712.1	cds1972	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:609277..612531+
coding sequence from alignment at CM002458.1:609277..612531+

mRNA sequence

>rna1977 ID=rna1977|Name=rna1977|organism=Nannochloropsis gaditana|type=mRNA|length=2685bp
ATGGACAGAAGAAGGTGGTCACCTTGCACGCAGTGTGCTGGCAGTGCCGC
ACAAAGCCTGTTTGTTCTTATCCTTGTTGTCGTTTCCTGCGTGGAGGGTT
TTCGATTCTCCTTTCCAACCAAAAGAAACCGTCTTCCAAGTCCTAAGCTG
GTGCTTTTTGCGACGGATACTGACGCGAAGTTGGGAGGAGTGAACGTGAC
AGTGCCATCTATTCCAGGACCGAACAAAGCTTTGACAAATAATGATGAGG
AGAAAATCGCTCTGACCAGACCGACGTCAGAAGTAAGCAGTCGACCAAAA
GTTGGAGTCAGCGCTCCACCAAGCTCGTCTGAGTCTTCGAAAGTCGTTGC
AGCTCCGACACCAGCGAAGTCAACTTCGGCCCCTGTCAAGGATCCTACGC
CCAAACCGATATTCGGGAGTAAGAAATCTGTTGATGCCATTCCGGGAGAG
GCCCCCACAAAGCCCAAGTCTGCCGACAAGCCACAGAAGCCTGTCAAGCC
GCTGGACCGTGCGCGCCTGATCGAGGAAATCGCCACAGCAATCGGTGGAA
CTGCTGTCGGCTTTATATTGGGGACTTGGCTTGAGCGCCAGGCACAGAGC
GACGAAGCCACTTTGACGGCAGCGTCCGGTGCGACAGTGTTGGGGCTCGT
GTCGTACATCGTCTCCCGCGCCGACAACTTGGCGGGTGTAGCCGTGCGCA
AGAGCCTGGGGGGCGCGACGCTGGGCCTAGTCAGGGGGGCAACGGGGGCG
GTCACAGGCGTCGTCTCTGGCGCGATCAACGGCATCAAGCGAGGTGTTCA
GCAGAAAGTAGAAGACCTGAAAAATACACCTGGGCGCATACTCGACGGGA
TCAAGGCGAGCCTGAATGCAAGGGTGGAGGAGGTGAAGGCTCTGCCCGCA
CGGACTGCCGATGCCGCAAAGCGCAAAGCGCAGGCAACTGCAGAGGAGAT
AGCTGCCGTCCCTGGCCGTACCGCTCAAGCCATCAGCAACTCCGTGGTGG
AAAGTGTGGAGGGAGTCAAAGCGGCTTTGTCGGAGACGATAGACGGAGTC
GCGCGCGCACCCTCCGAGCTCATGGCCAGGGTAACCGGGGAAACCCCCTC
CTCTCCTCTTCCTCGCCCCAAACCCTCCTCCACGCCTCCCCTTCCTGATA
AACCAGCTTTGACGCCTCCCAAGGCGGCGGCCACGTTGAAGATCGGGGGC
AAGCCTATCAGCGCGGCTGCTTCGCCTTCGTCCTCCTCGCCTCGCTCTGT
TCCGACCAAGCCGGCCGCTCCAGTCCTGAAGTTCGGGGGTCAGTCGCCAA
GCCCTCGGTCCACGCCGAGCAAGGCCATCAGCACGAGCTCTCTTGGGAAA
GGCGGGCCAAGGAGGGAAGCGCCAGCCTCCCCAGCACCCGTCCTCGGGGG
CGCAAAGGGACAAGAGACCAAGAAACCGCTTACTCCCAGCAAACCTAAAT
TGTCGGCATCGACATCTGCAACCTCAGCTCCGCAAGTCTCCGGCAGCCCT
TTTCCCTCATTCAAGTCTGGTCCTGCACGCTCGAAGCCAGCTACAGCCTC
CCAAACTCGTAACAAAGGAAAAGAGGCGCCTGTCCTGGCTAAGAAGGAGG
GCTCATCCGTTTTTGGGCGACTATTTGCGCCCACTCAGGAACCGAAGGCG
AAAGTCCCTCCGCCTCCGCCAGCTTCTATTCCTGCGCCGGCGGAAAAGCC
GCAAGCACCAGCGGCATCCCCGAGCCTTTTCGCGGGGCTCTTTGGTTCTG
GCGCTTCGGCGTCACCCAAAAAAGCGATTTCGCCACTAACCTCACCCAAG
AACAAGCCTGTGACTGCCGCTGGCAAGGCAAGGACGGCGGCCCCACCTCT
TACGAATAAGCCTGTCACGCCCGCGCCTCTGACTGCCTCAAAAGCACCAC
CTAGGCCTCCCTCGACGGCACCCAAGCCTTCAGTCACGCCCAAGAAACCC
CTCAACTACAAGTTCTCGCCTCCTGTGCGACCAAAATCGTCTATCAGCCC
GCTTCTCCTCAAACCTGGAGCCAAAGCGTCAGAGAAAGTGGAGGAAGAGA
ATAATGCTGCGCCTGCGCCAAAGAAAATTGTGTACCGCTCCCCCCCCCCC
CCCTCTCGTCCAGCCCTTGCGAGCTTCCCGAAGATCAAGTCTTTGGCCTC
AGCACCCCCGAAGGAGACCCCTGTCTCCCCCCCCGTCCCCGATAAAGCAT
CTGGTGCCGGGCCCTTCGCTGGTCTTTTTGGCGGACGCCCTCTTTCATCC
TCTTCCAAGGGCTCCAACAGTATCGGGAAAGCTAAGGCAGGTAAAGCGCC
CAGTAAGCCCTTGCCGCCCATGGCAATGCCAGAGAGCGCCGAGCCCGCAC
TCAAGTCAGCAAATGACAGCAAAGGTCAGTTTACCGGCATATTTGGTACT
TCGCCAACAAGGACTCCTTCGCCTCCGAAACCTCAAATAATGAAGCCTGC
GGCTATTGATGACAAGAAATCGTCACAGGATGCAGGGGCTAGCGGCGGGA
TAGGAGTGTTCGGTGGACTTTTCGGGAAAGCCAAGGTAGAGACGAAGAAG
GCTCAGCAGGTGCCCAAGAAGCCCGAAGGTTCGGCGAAGTCTGGGAAGTT
GGACGAAGTAAGTTTGCTGTCTTTGAAGCAGACGATCCGCCGAGAACAAA
AACAAGCTTTGAAATCCCTCGGGAAGAAGAATTAA

protein sequence of rna1977

>rna1977-protein ID=rna1977-protein|Name=rna1977|organism=Nannochloropsis gaditana|type=polypeptide|length=669bp
MERRILSRLRHPNVVELYHAFQDCYCLYMLLEYCAGGEVWQRLQAEGKSL
VSVGVPYTLARFYTREVVEALRFLHGEGIVHRDVKPENMVLTARGRLKLI
DFGTAKDVIETDLNGPDFVGTPEYMSPEASRSQETFMEADLWALGCCLYQ
FLVGVSPFRAPAPYLVFLRSRRCCLRFPAVVPPHARDLILKLLRRRPQER
LGSSRNAMNDARGHAAILSHPFFSSSSTEGDMLPDITSTTVASEDRLPDL
SPVVSEASPREAQLRDLAAQCITHAISTRPPGSEFVESMLGLKMPERAVV
LHLLERHGRLGEPRVLRLAQLGLSSSPPFSPCSTAESAKSRILGRIDWSG
KEVYGLSRADQGTFIGPFFLVYLGGLSCENNEHMGPQLQKAICGINRLRP
RLVVVSSTLFEQASTMSNCEAGWHNEVWDLLGRISQSIPIVFAGAADFAA
ETSYEVLDRHGSMRGCAFWYGGMRGLVLPCNDTGGVSSDEKTKEDDWVVE
ELEQACYFNSQNLLIFAPHSWFKCNQASHTSQMEVEIINKRVRKWALGNV
HGHESCLRAIIAPSVFSESCSVKAIRDRRETDLESDSSSDQKSDEDDEGS
EDYGQETHGLDAGCVNSVQAPTHVEQVLVREACIVEVYRNRVRCTFLTLD
QLSSKQSVHLAPEFSLEGE

mRNA from alignment at CM002458.1:609277..612531+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1977 ID=rna1977|Name=rna1977|organism=Nannochloropsis gaditana|type=mRNA|length=3255bp|location=Sequence derived from alignment at CM002458.1:609277..612531+ (Nannochloropsis gaditana)
GCATGTGAATGTAACAGACTGGAGGCTTTCTCGTCATGAGCCGTAGGACA
GCAACAGTTCTAATTGCTAACGCGATACATTGCGCGCAATTTACGAGGAA
GCCCGAGAAGCCCAGAGCCCCAGCAGTCTGCCATCTTGTTACGCTTTTTT
GAAATCATATCCCTTCACGTCTACTTTTATTTGTTGaacttttttcctct
tctacTTGGATAGGATGGTGGAACTACAGTTATGTGAGCTTTGCTTAACT
TATCTTCAAAGGTGCTTTTGCCGGTCAGCCTTATGATGGCGTCACCAACT
ATTTCACCATCTCCTTCTGATCACCGTCCACCATCTGAGAGGCCGAAGAA
GACGGCATTAGattggaaggaagagggaaatcaGTTTTATCGTGAAAAAA
AGTTCAGGGCAGCGTTAGAATGCTATTCGCAGGCCTTGACCCTTGACCCC
TCGGGACCAACCACTGCCTACATTTACTTGTCGAATCGATCATCCTGTAA
CCTCTTGCTGGAAAATTGGGCAGAAGCAGCGGTAGATGCGCGTCAAAGCC
TGGAATTAGCTCCTGTGGATATTCCTTTCCCAAAGGGATATTATCGCTTG
GCAAAAGCCTGTTTGGAAATGGGAAAGTTTGGAGAGGCAAACGAGGTAAT
TTAATCTTATCGTTTTTCCTACTCTGCTCTTCCGTAATCCATCAGAACAT
GCCAGGCACCCTTCAAGCCTAGACGATGTCTCCTCATTCTTGTCTATTCA
CAACGGTGAAGTGGCTAAGTTGCATTCTGACACATCGGGCACACCCTTCT
TTATCATCAGGCCATCAGTAGAGGCCTCGCGCAGGACCCGGGCAACCCCG
ACCTCCGACTTCAGGAGCGCAGATTGAAGGAGGCGCGAGCACGGGAAATT
GCGGCAATTAAGACAGCCAAAGATCCTCGAAAGCGTGTGACACCTGCAGA
CCTGGAAGTTTTGGGAACGTTGGGGGAAGGGAATTTCTCACGAATAGCTC
TTGTGAAGCACCGACAGACGGGAGAGCATTTCGCCCTGAAAATTCTCGAA
AAAGCCCAAGTAGAGCGCGTGCAAAAGCGACATCCCAATGTGGCCAACGA
AATAAGCATGGAACGGCGAATTCTCAGCCGCCTTCGTCACCCCAATGTGG
TCGAGCTTTATCATGCGTTTCAAGACTGCTATTGCTTGTACATGCTTTTG
GAGTActgcgcgggcggggaggtctGGCAGCGCCTGCAGGCCGAGGGGAA
AAGCTTGGTGAGCGTTGGCGTGCCTTATACTTTGGCTCGTTTTTATACGC
GAGAAGTGGTTGAAGCGCTGAGATTTCTTCATGGAGAGGGAATTGTACAC
CGCGATGTCAAGCCCGAGAACATGGTCCTTACCGCCCGGGGCCGACTGAA
GCTCATAGACTTCGGGACTGCTAAAGACGTGATTGAGACGGATTTGAACG
GGCCAGATTTCGTCGGCACGCCAGAATATATGAGCCCGGAGGCCAGCAGG
AGTCAAGAGACTTTTATGGAGGCAGATTTGTGGGCACTGGGTTGTTGTCT
GTACCAGTTCTTGGTCGGAGTGTCTCCCTTCCGGGCGCCAGCTCCATACC
TCGTCTTTCTCCGTTCACGACGATGCTGTCTTCGCTTTCCGGCAGTTGTT
CCTCCGCACGCGAGGGACCTCATCTTGAAGCTTCTACGCCGGCGTCCACA
GGAGCGCTTGGGGTCCTCTCGGAACGCCATGAACGACGCACGAGGCCATG
CTGCTATCCTCTCgcaccccttcttctcctcctcctcaacagAGGGAGAT
ATGCTTCCTGACATCACATCCACAACGGTGGCAAGCGAAGACCGGCTGCC
GGATTTATCACCAGTGGTCAGTGAGGCCTCTCCGCGCGAAGCCCAACTGC
GAGATTTAGCAGCACAATGTATCACTCATGCGATTAGCACGAGGCCGCCA
GGATCGGAATTTGTTGAAAGTATGCTTGGTTTGAAGATGCCCGAGCGTGC
GGTGGTGCTTCACTTGCTGGAGCGACACGGGCGTCTAGGAGAACCTCGGG
TTTTGCGGCTCGCGCAGCTTGGATTGAGTTCATCGCCGCCATTTTCTCCG
TGTAGCACAGCAGAATCGGCTAAATCTCGCATATTGGGACGAATAGATtg
gagcgggaaggaagttTACGGTCTGAGTAGAGCGGATCAAGGCACCTTCA
TAGGGCCATTTTTCCTCGTGTACTTGGGGGGATTGAGCTGTGAAAATAAT
GAGCATATGGGCCCACAGCTGCAGAAGGCAATTTGTGGTATTAATCGCCT
CAGGCCTCGACTGGTTGTAGTCTCCTCAACGTTATTTGAACAAGCCAGTA
CGATGTCAAATTGTGAAGCGGGATGGCACAACGAGGTGTGGGATCTTCTG
GGCCGTATCAGTCAGTCCATTCCCATCGTTTTTGCGGGCGCTGCCGATTT
TGCAGCGGAAACAAGTTACGAGGTCTTAGACAGGCACGGTTCAATGAGAG
GTTGCGCTTTCTGGTACGGTGGGATGCGCGGGCTCGTGCTCCCATGCAAT
GACACCGGCGGTGTCTCATCTGACGAAAAAACTAAGGAGGATGactgggt
ggtggaggagctagAGCAAGCATGCTACTTTAATAGCCAGAATTTGCTCA
TCTTTGCTCCTCATTCATGGTTCAAGTGTAATCAAGCTTCGCACACTTCC
CAGATGGAGGTAGAAATTATCAATAAACGCGTGCGAAAGTGGGCGTTGGG
GAACGTCCACGGGCACGAGAGTTGCCTGCGCGCTATAATTGCACCCTCGG
TCTTCTCAGAATCGTGCAGTGTTAAGGCGATCCGTGATCGCAGAGAGACG
GATCTTGAAAgtgacagcagcagcgaccaGAAATcggatgaggatgacga
aggaagcgaggatTATGGCCAGGAGACGCACGGGTTGGATGCCGGTTGCG
TTAATTCGGTCCAAGCCCCGACGCACGTGGAGCAAGTCCTTGTCCGGGAG
GCGTGCATTGTAGAGGTGTACAGGAATCGTGTTCGTTGTACTTTTTTAAC
CCTGGATCAACTTTCATCGAAGCAATCAGTTCATCTAGCTCCTGAATTCa
gtttggagggagaataATTTTGTGATATGTCGCGTAGAACTTTAAATCCA
AAACATGAAGGCACACAGAATTTAGAGATCCATACAATCGATGAGTACAC
GACCGTTTCTAATTTTTCAAATCCGGTGACTCTCGTGTGAGGACCTTTAT
TTTTA

Coding sequence (CDS) from alignment at CM002458.1:609277..612531+

>rna1977 ID=rna1977|Name=rna1977|organism=Nannochloropsis gaditana|type=CDS|length=2010bp|location=Sequence derived from alignment at CM002458.1:609277..612531+ (Nannochloropsis gaditana)
ATGGAACGGCGAATTCTCAGCCGCCTTCGTCACCCCAATGTGGTCGAGCT
TTATCATGCGTTTCAAGACTGCTATTGCTTGTACATGCTTTTGGAGTAct
gcgcgggcggggaggtctGGCAGCGCCTGCAGGCCGAGGGGAAAAGCTTG
GTGAGCGTTGGCGTGCCTTATACTTTGGCTCGTTTTTATACGCGAGAAGT
GGTTGAAGCGCTGAGATTTCTTCATGGAGAGGGAATTGTACACCGCGATG
TCAAGCCCGAGAACATGGTCCTTACCGCCCGGGGCCGACTGAAGCTCATA
GACTTCGGGACTGCTAAAGACGTGATTGAGACGGATTTGAACGGGCCAGA
TTTCGTCGGCACGCCAGAATATATGAGCCCGGAGGCCAGCAGGAGTCAAG
AGACTTTTATGGAGGCAGATTTGTGGGCACTGGGTTGTTGTCTGTACCAG
TTCTTGGTCGGAGTGTCTCCCTTCCGGGCGCCAGCTCCATACCTCGTCTT
TCTCCGTTCACGACGATGCTGTCTTCGCTTTCCGGCAGTTGTTCCTCCGC
ACGCGAGGGACCTCATCTTGAAGCTTCTACGCCGGCGTCCACAGGAGCGC
TTGGGGTCCTCTCGGAACGCCATGAACGACGCACGAGGCCATGCTGCTAT
CCTCTCgcaccccttcttctcctcctcctcaacagAGGGAGATATGCTTC
CTGACATCACATCCACAACGGTGGCAAGCGAAGACCGGCTGCCGGATTTA
TCACCAGTGGTCAGTGAGGCCTCTCCGCGCGAAGCCCAACTGCGAGATTT
AGCAGCACAATGTATCACTCATGCGATTAGCACGAGGCCGCCAGGATCGG
AATTTGTTGAAAGTATGCTTGGTTTGAAGATGCCCGAGCGTGCGGTGGTG
CTTCACTTGCTGGAGCGACACGGGCGTCTAGGAGAACCTCGGGTTTTGCG
GCTCGCGCAGCTTGGATTGAGTTCATCGCCGCCATTTTCTCCGTGTAGCA
CAGCAGAATCGGCTAAATCTCGCATATTGGGACGAATAGATtggagcggg
aaggaagttTACGGTCTGAGTAGAGCGGATCAAGGCACCTTCATAGGGCC
ATTTTTCCTCGTGTACTTGGGGGGATTGAGCTGTGAAAATAATGAGCATA
TGGGCCCACAGCTGCAGAAGGCAATTTGTGGTATTAATCGCCTCAGGCCT
CGACTGGTTGTAGTCTCCTCAACGTTATTTGAACAAGCCAGTACGATGTC
AAATTGTGAAGCGGGATGGCACAACGAGGTGTGGGATCTTCTGGGCCGTA
TCAGTCAGTCCATTCCCATCGTTTTTGCGGGCGCTGCCGATTTTGCAGCG
GAAACAAGTTACGAGGTCTTAGACAGGCACGGTTCAATGAGAGGTTGCGC
TTTCTGGTACGGTGGGATGCGCGGGCTCGTGCTCCCATGCAATGACACCG
GCGGTGTCTCATCTGACGAAAAAACTAAGGAGGATGactgggtggtggag
gagctagAGCAAGCATGCTACTTTAATAGCCAGAATTTGCTCATCTTTGC
TCCTCATTCATGGTTCAAGTGTAATCAAGCTTCGCACACTTCCCAGATGG
AGGTAGAAATTATCAATAAACGCGTGCGAAAGTGGGCGTTGGGGAACGTC
CACGGGCACGAGAGTTGCCTGCGCGCTATAATTGCACCCTCGGTCTTCTC
AGAATCGTGCAGTGTTAAGGCGATCCGTGATCGCAGAGAGACGGATCTTG
AAAgtgacagcagcagcgaccaGAAATcggatgaggatgacgaaggaagc
gaggatTATGGCCAGGAGACGCACGGGTTGGATGCCGGTTGCGTTAATTC
GGTCCAAGCCCCGACGCACGTGGAGCAAGTCCTTGTCCGGGAGGCGTGCA
TTGTAGAGGTGTACAGGAATCGTGTTCGTTGTACTTTTTTAACCCTGGAT
CAACTTTCATCGAAGCAATCAGTTCATCTAGCTCCTGAATTCagtttgga
gggagaataA

Synonyms

Publications