rna1974, rna1974 (mRNA) Nannochloropsis gaditana

Overview
Namerna1974
Unique Namerna1974
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002458.1:603376..605010 +

Link to JBrowse

Properties
Property NameValue
Productglycoprotease m22 family protein
Orig transcript idgnl|cribi|Naga_100002g44.4862.mrna
Orig protein idgnl|cribi|Naga_100002g44.4862
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:603376..605010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g44gene1885Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1974rna1974-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28743.1cds1969Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1974 ID=rna1974|Name=rna1974|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
ACATCTACTCCCTGTAGAACCAGCCAGTGATTGATATCTCACTAGTCTCG
CTGGACATGACTCCTGCCGCGTCAGCTTTGGACATCAGGGGCGTTGGCAA
GAGTCTGCTCGCGGAGTACAGAAAGGCAGCCAACACACAAACCAAAATTG
TGGACCTTTTCCTGGCCTTCATAGTGGCGACTGGCGTGCTCCAATTTCTG
TATTGTGCACTTGTGGGTACCTTCCCCTTCAACTCTTTCCTCTCTGGATT
CTTCAGCTGCGTCGGTATGTTCGCCTTGACCGTTTCCTTGAGGCTTCAGC
TGTCGTCTGAAAAGAATGTCGAGAAGGCATTCGGAGAGTACACGTTTTGC
TGCCTTTTGCTCTTCTTCGTCGTCTTCAATTTCATTGGATGAGGCGTATG
AGCTGGCGATCTAGAGCATTTTTTTTCTTATAAATAATGTCTCTTATCAT
TGAAAACTATGCATGAAGATGCTTTCGCTCACACTCTTTTTGATGATTTT
ACGGTTCTACGCCAGCTTTATTTAAAAATTTGTTCTTTCGCGCGTTCAAC
ATGTCGTCCAGGGCTCTGAACCAGTAAATTTATAGGTTGGA
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protein sequence of rna1974

>rna1974-protein ID=rna1974-protein|Name=rna1974|organism=Nannochloropsis gaditana|type=polypeptide|length=406bp
MRRHFQCTEPRRQHHISFERRWMDSGGEGISGIEGNLPLPREDLLPSQYF
LGIEGSANKVGVGIVKYKLERGALAAVKHMARTKWNDREEDQYIILANPR
KTYIPPPGQGFLPRDTAWHHQQHIVGLIQLALAEAEVTSDQVTCICVTKG
PGMGGPLRSCAVAARVLARLWKKPIVPVNHCVAHVEMGRVATKAADPVVL
YVSGGNTQVIAYSMRRYRIFGETIDIAVGNCLDRFARLLNLSNDPSPGYN
IEQLAKKGRQYVALPYVVKGMDVSFAGLLSFIEKEGLVKLESNMCTAADL
CFSLQETIFAMLVEITERAMAHCGQRQVLIVGGVGCNRRLQEMMEAMADE
RGGSVCAMDHRYCIDNGGMIAQAGAFAHQYGASFALSDTACTQRFRTDAV
EVLWRP
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mRNA from alignment at CM002458.1:603376..605010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1974 ID=rna1974|Name=rna1974|organism=Nannochloropsis gaditana|type=mRNA|length=1635bp|location=Sequence derived from alignment at CM002458.1:603376..605010+ (Nannochloropsis gaditana)
CGGTTCAGGCGAGTCTTCGAAGTCCGAGGGAGacccgaggaggacgcaga
gcgCGAGGGGGCGAAACGAAACAAGGCGATGTGGTAGGACACATGAAGAG
AAAGTGTTTCATGGATGAGGCGGCACTTTCAATGCACAGAGCCACGTAGA
CAGCACCATATTTCGTTCGAAAGACGCTGGATGGattcggggggggaggg
gattaGCGGCATCGAGGGTAacctccccctgccgcgCGAGGATCTGTTGC
CTTCCCAGTACTTTCTGGGCATTGAGGGCAGTGCGAATAAGGTTCGTTCT
ACCAGCTTTCCCCCTATTCTAATATGTACCATCGTAAGTCTTCAAAAAAA
ATCTTCATTTTTCCAGGTTGGAGTTGGAATCGTGAAGTACAAGCTTGAGA
GGGGAGCACTCGCAGCCGTCAAGCACATGGCGCGGACTAAATGGAACGAT
CGCGAGGAAGACCAGTATATTATCCTAGCAAACCCCCGAAAGACATacat
tcctcccccgggaCAGGGTTTTCTGCCTCGTGACACAGCGTGGCACCATC
AGCAGCACATTGTGGGGTTAATCCAACTCGCTCTGGCCGAAGCCGAAGTC
ACTTCGGATCAAGTTACTTGTATCTGCGTTACCAAAGGACCCGGTATGGG
AGGCCCGCTTCGATCTTGCGCCGTTGCGGCAAGAGTCTTGGCACGATTGT
GGAAGAAGCCCATTGTTCCTGTCAATCACTGCGTAGCACATGTAGAGATG
GGGCGAGTTGCAACCAAAGCGGCCGATCCTGTTGTGCTTTACGTCAGCGG
AGGCAACACTCAAGTCATCGCGTATTCCATGCGCCGCTACAGAATTTTTG
GAGAGACGATTGACATTGCCGTAGGAAATTGTTTGGACCGTTTCGCACGT
CTCTTAAATCTGTCCAACGACCCCTCCCCAGGGTACAACATCGAGCAGCT
TGCCAAGAAAGGCAGGCAGTATGTGGCGCTGCCATATGTGGTCAAGGGAA
TGGACGTATCGTTCGCCGGCTTGTTGAGTTTcattgaaaaagaaggcctG
GTAAAGCTTGAGTCCAACATGTGCACGGCGGCAGACCTCTGCTTCTCGCT
GCAAGAAACCATCTTCGCCATGCTTGTGGAGATCACTGAACGTGCCATGG
CTCATTGTGGCCAGCGCCAGGTCTTGATTGTGGGCGGCGTAGGATGCAAC
AGGCGCTTGCAGGAAATGATGGAAGCTATGGCAGATGAGCGTGGCGGAAG
TGTGTGCGCGATGGACCATCGGTACTGCATCGACAACGGTGGCATGATTG
CGCAGGCGGGGGCCTTCGCACACCAGTACGGCGCTTCCTTCGCACTGTCC
GACACTGCTTGTACACAACGCTTCCGTACAGATGCGGTCGAGGTGCTGTG
GCGCCCGTAAGCTTCTACTAATTCTTGGTAAATAATATGCTTTCAAAAGA
TTTTACTCATAAAAAGACAATGTATCGTGCAAAGAGTGCTATTGATTTAC
ACCGCCCGCGAACTTCACGGGGAAGCGTCACTACATTGCTTTTTAGCGTA
CTGCCAAAAAGGATAGCACTATTCTTCTTTCGATTAAAGCAAAGAGAAGA
CGTAAAAGATAAGGAAAAAGGTGATTGAGACAGGA
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Coding sequence (CDS) from alignment at CM002458.1:603376..605010+

>rna1974 ID=rna1974|Name=rna1974|organism=Nannochloropsis gaditana|type=CDS|length=2442bp|location=Sequence derived from alignment at CM002458.1:603376..605010+ (Nannochloropsis gaditana)
ATGAGGCGGCACTTTCAATGCACAGAGCCACGTAGACAGCACCATATTTC
GTTCGAAAGACGCTGGATGGattcggggggggaggggattaGCGGCATCG
AGGGTAacctccccctgccgcgCGAGGATCTGTTGCCTTCCCAGTACTTT
CTGGGCATTGAGGGCAGTGCGAATAAGGTTGGAGTTGGAATCGTGAAGTA
CAAGCTTGAGAGGGGAGCACTCGCAGCCGTCAAGCACATGGCGCGGACTA
AATGGAACGATCGCGAGGAAGACCAGTATATTATCCTAGCAAACCCCCGA
AAGACATacattcctcccccgggaCAGGGTTTTCTGCCTCGTGACACAGC
GTGGCACCATCAGCAGCACATTGTGGGGTTAATCCAACTCGCTCTGGCCG
AAGCCGAAGTCACTTCGGATCAAGTTACTTGTATCTGCGTTACCAAAGGA
CCCGGTATGGGAGGCCCGCTTCGATCTTGCGCCGTTGCGGCAAGAGTCTT
GGCACGATTGTGGAAGAAGCCCATTGTTCCTGTCAATCACTGCGTAGCAC
ATGTAGAGATGGGGCGAGTTGCAACCAAAGCGGCCGATCCTGTTGTGCTT
TACGTCAGCGGAGGCAACACTCAAGTCATCGCGTATTCCATGCGCCGCTA
CAGAATTTTTGGAGAGACGATTGACATTGCCGTAGGAAATTGTTTGGACC
GTTTCGCACGTCTCTTAAATCTGTCCAACGACCCCTCCCCAGGGTACAAC
ATCGAGCAGCTTGCCAAGAAAGGCAGGCAGTATGTGGCGCTGCCATATGT
GGTCAAGGGAATGGACGTATCGTTCGCCGGCTTGTTGAGTTTcattgaaa
aagaaggcctGGTAAAGCTTGAGTCCAACATGTGCACGGCGGCAGACCTC
TGCTTCTCGCTGCAAGAAACCATCTTCGCCATGCTTGTGGAGATCACTGA
ACGTGCCATGGCTCATTGTGGCCAGCGCCAGGTCTTGATTGTGGGCGGCG
TAGGATGCAACAGGCGCTTGCAGGAAATGATGGAAGCTATGGCAGATGAG
CGTGGCGGAAGTGTGTGCGCGATGGACCATCGGTACTGCATCGACAACGG
TGGCATGATTGCGCAGGCGGGGGCCTTCGCACACCAGTACGGCGCTTCCT
TCGCACTGTCCGACACTGCTTGTACACAACGCTTCCGTACAGATGCGGTC
GAGGTGCTGTGGCGCCCGTAAATGAGGCGGCACTTTCAATGCACAGAGCC
ACGTAGACAGCACCATATTTCGTTCGAAAGACGCTGGATGGattcggggg
gggaggggattaGCGGCATCGAGGGTAacctccccctgccgcgCGAGGAT
CTGTTGCCTTCCCAGTACTTTCTGGGCATTGAGGGCAGTGCGAATAAGGT
TGGAGTTGGAATCGTGAAGTACAAGCTTGAGAGGGGAGCACTCGCAGCCG
TCAAGCACATGGCGCGGACTAAATGGAACGATCGCGAGGAAGACCAGTAT
ATTATCCTAGCAAACCCCCGAAAGACATacattcctcccccgggaCAGGG
TTTTCTGCCTCGTGACACAGCGTGGCACCATCAGCAGCACATTGTGGGGT
TAATCCAACTCGCTCTGGCCGAAGCCGAAGTCACTTCGGATCAAGTTACT
TGTATCTGCGTTACCAAAGGACCCGGTATGGGAGGCCCGCTTCGATCTTG
CGCCGTTGCGGCAAGAGTCTTGGCACGATTGTGGAAGAAGCCCATTGTTC
CTGTCAATCACTGCGTAGCACATGTAGAGATGGGGCGAGTTGCAACCAAA
GCGGCCGATCCTGTTGTGCTTTACGTCAGCGGAGGCAACACTCAAGTCAT
CGCGTATTCCATGCGCCGCTACAGAATTTTTGGAGAGACGATTGACATTG
CCGTAGGAAATTGTTTGGACCGTTTCGCACGTCTCTTAAATCTGTCCAAC
GACCCCTCCCCAGGGTACAACATCGAGCAGCTTGCCAAGAAAGGCAGGCA
GTATGTGGCGCTGCCATATGTGGTCAAGGGAATGGACGTATCGTTCGCCG
GCTTGTTGAGTTTcattgaaaaagaaggcctGGTAAAGCTTGAGTCCAAC
ATGTGCACGGCGGCAGACCTCTGCTTCTCGCTGCAAGAAACCATCTTCGC
CATGCTTGTGGAGATCACTGAACGTGCCATGGCTCATTGTGGCCAGCGCC
AGGTCTTGATTGTGGGCGGCGTAGGATGCAACAGGCGCTTGCAGGAAATG
ATGGAAGCTATGGCAGATGAGCGTGGCGGAAGTGTGTGCGCGATGGACCA
TCGGTACTGCATCGACAACGGTGGCATGATTGCGCAGGCGGGGGCCTTCG
CACACCAGTACGGCGCTTCCTTCGCACTGTCCGACACTGCTTGTACACAA
CGCTTCCGTACAGATGCGGTCGAGGTGCTGTGGCGCCCGTAA
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Synonyms
Publications