rna1972, rna1972 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1972
Unique Name	rna1972
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2847
Alignment location	CM002458.1:600902..602780 +

Link to JBrowse

Properties


Property Name	Value
Product	lysocardiolipin acyltransferase 1
Orig transcript id	gnl\|cribi\|Naga_100002g46.4834.mrna
Orig protein id	gnl\|cribi\|Naga_100002g46.4834
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:600902..602780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g46	gene1883	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1972	rna1972-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28715.1	cds1967	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:600902..602780+
coding sequence from alignment at CM002458.1:600902..602780+

mRNA sequence

>rna1972 ID=rna1972|Name=rna1972|organism=Nannochloropsis gaditana|type=mRNA|length=2847bp
ATGGAGCAGCTCAAGCGTCGCGGAAATGCCTTGTACAAGAAGAAAAAAAT
CGATGATGCTCTTCAAGCCTATGACGAGGCATTAAATTTCCCTTTTGTTG
CACCAGGAAAATTAGACCATAATGACGAGGAGGCTCGACAAGAAGAAAAG
AGAATACAAGAGCTTCGTTGCGCCATTTTTGCGAATCGGGCAGCATGTTA
TCTTCAAAAAGGAAGATTGACGGAGTGTATCCAGGATGCCACCAATGCTC
TTAGATCGAATGGAAACTACGTCAAAGCGCTGTATAGACGAGCACAGGCG
TATGCTGAACTAGGTAATTTGCGAGATGCTTTTCAAGACTTGCGTCTGGC
GCTGGACCTGGATCCCTTCAATCAAGAAATTATACGTGAAGCGCACAGAG
TACGAGAGTCTATTCAGAGATCTGAGGCCGAGCGTCAGAGCTCTGGTGTT
TCAGTCTACCTCGCGTCCCTTGGAACAAATGATGAAGCATTCTTTAAAAA
ACAGAATAGAACTGATATGTGGGAAAAATTGATCAGCTTGCGCGCTCTTG
CGCTTCGATTACTCGCGGCTTGCTCCAAGCATCTTGATTTCCTTGAAGAC
GCTTTTTCTCCGCCCTCGAATGAGACCATATGCGAGACATCTTTCCCAAA
ACTCTTCACCAGCTTGTTGCCAAGCCATGAAAAGCAGAAGAACGGGGTAG
AAGAGGAAGCTGTGCTGGAAATCGCTACAAATTTCATTCGCCTCGCCGAA
ACCAACAGACGCCGTACGCAATTTTTGACGCTTGCGATAGACTGCTGGAT
CACGCTTTTGACTCATCGACGGGAAACGTTTCAAGAAATAGGATTAGCCT
CCTTGCTTTCCTGGAGCGCAAACTGTCTGAACGAGAAAGATCAAAGTCTT
TCCCTTCTGTTGGCTAAGCCTTCCTGGACGACTCTGCTAAGGTTCCTTGA
AGACCCAAACGATTCATTCGATGTCTGCTTGCGGCTCGAGGCGGCAGAAT
TCATAGGTCGTGCTTTTATGGTCCTCTTGTTTCATAAAGGATCAGACGAG
GTGAAATCATTTGTCTCAAGCATTCTTGATAACTCGGTTAATGAATTACC
TGCTGTACGTAAAGCTGAGCTTGAGTTGCTGGTCACGCTGAGTTTATATT
ACGCGGACGCCTCTTTAGGATGCTGGTTGTTTAGCACATATGCAGCTCAG
GCCAAAAGTCGGACATCTGTGTTATTCTCGGAACCGCAATACCAATTTTT
TATGGCAAAATTATGCAACCAGGCGGCGAATTCAAGTGCGGGGCGTATAT
GCATGCGTGATCATTGTATGAACATTGTAATACTGAATATTATTAGATCG
AACGATGCTCCGTTGGAGGCTCGCGTGGCAGCAGCATCCGCTTTCACAAA
GCTCCACATTGCATCCAAAGATATGCCTTTAATTTCATCCGAGCTGACTG
ACATATTAAACTTATTGAGTAAAGGGCTTCAGGATTGGATTGGTGCATCT
CAGACCTTGGGGTCAACGCTCATGCACCGACGCACGTTGTCAGAAAGCTG
CGTGGAAATTATCTCATTTCTCGTTACACGGACTGCTTTTAAAAATGAGC
TGATGTTTGGTTCTAGCCGCTGCATAGCGTGCGTTCCATTTCTGCTGGAG
GTGATGGACCAGCGCGCTGAAAGGAGAACAATTGGCATGAGCACCAACAT
CAATCGGAGAAATTCCATTTCTGCGCTTTGTGGAAAAACACTCTATGGCG
TGGCATTCTCGATGGCCTCTCTGACATTGAACAATGAGGAGATGAAAGCT
GACGCTTTACAAGAAGGAGGCATTGCTGTTGACGAATATGAGAATATCCA
GAGGATCCTACGAATGCAGCAGAAACAGCTTCCACAGACAGCAATAGAAG
AAGACTTGGACACTGTAGACTCTGCACAAGATGTAGAGAAACGCATTCGA
GAACTAGTCCAGCGAAATGTTATCGGAATCATACGCAGACTAGTATCACA
CACGGAAATAAGTGAGAGTACTCTCGATCAATTTGCCACAGCACTCCTAA
ATATTGCCACAATTCCAGCACTTCGTGGACAGTTTATACAGGACGGGGGA
TACAACACTTGTCTAGGCCTGGCTAAGGAAAATAGAGGGCTGGAAGTTAC
ACGTCTGAAATCGGTGCAGGCTCTGGCGAAATGCCTCATTACTACAGATC
CCAAGGTTCTGGCAAGTCACCAGCGCACGGCTCCGATACACGCACTTGTA
TCGCTATGTCGCAATGTCAGAGCAACCGCCCTACAACAATTCGAATCGTC
ACTGGCTCTAACGAATCTCGCATCGTATGGAAAGGAGTGCATAGATTCGA
TAGCGCTTAATGGAGGGATAGAATCTTTCTTCTCTTTGCAATTTTCGGAG
CAAACGCTTGTAAGACGGGCCGCAACCGAGGCGCTTTGCAACATGGTGAG
CCATCCCCTTGTGCTTGCTAAGCTTGGGAAACCTGAGACTCTTAAATACT
GGCTGAGTCTTGCAGAAGATTATACGAGAGATCTTCCGCTGTCTCGTGCT
GCAGCAGGAGGATTAGCTATGGCTTCCAAGGACGAAGAAATAGTCCGATC
CATGGCAGTCTTGTCTCCCATTGCGTTGAATACTTGGGGGTCGTTGCTTC
GAAGTGGCGAAACAACTCTGATTCACCGAGCTGCAACCGCTATCCAACAT
TTATATTCATTTAACTGCACTCGAGAATTACTGTTCAAAGACGAAAATTT
TCAAAACAGTCTGAGGGAGGCTGCGAATATTGATCACCTGTCGGAGGAGA
TCGGTGACCTGATTCGGATCGCATTATCTCAATTTCCTCGAAAGTGA

protein sequence of rna1972

>rna1972-protein ID=rna1972-protein|Name=rna1972|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MRSNKSCKTCPNRLHVGIAILFPLLLSAFCFCHFLMLPPAIALLIMPYAP
VRRVLRLWEATIAAYWLSFGAWLLENLGGVKLIISGDTFTKKDNVLIICN
HRTRLDWMWLWSWAAYFDVLSSYRVILKDSLRCFPWWGWGMSLCLFPFIR
RGQKHRSTDLAHLKRNCRYLIQLKVSNSLIIFPEGTDLSPSNQERDRNYA
LSRNLSAYRYVLHPRTGAFLTCLEILRPHVDAVIDLTIGYVDYEPGERPS
EISLLLGRLPREIHVNLKRWDLVLTPLLCRDNIEDAKKFLQLSFDRKEAL
LTSFYNRGKLRFDLDAVGSTSSRSSSETSPDPISQLNAPRSGYGDDDALA
NERSQSRYQRLLRKGLVVAVAAVTTVVLMAYVLPTVFFWGYIVATCLLCI
LVTVSCEGFDSLELNLPVRGGDIRVRRLHKEH

mRNA from alignment at CM002458.1:600902..602780+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1972 ID=rna1972|Name=rna1972|organism=Nannochloropsis gaditana|type=mRNA|length=1879bp|location=Sequence derived from alignment at CM002458.1:600902..602780+ (Nannochloropsis gaditana)
TGCATAGCAAGAATGAGAGCCgtctgggaggaagcgcggaaGAGCACCGT
GATGCCGCCCTACCTTGCCCTACTAAGACTGCCCCCAGCCCGCCGCCCTC
GCTCATTGTCCACGTGTGACACTCTGCATGGGATGCCTTGAAACTGACAA
GTGCGCCGACCACTCCCCCTACACTCCATGGTTAGATGAGAAGTAACAAA
TCATGCAAGACTTGTCCTAATCGACTTCATGTAGGAATCGCAATCCTTTT
TCCGCTACTCCTGAGTGCTTTCTGTTTCTGCCACTTTTTAATGCTTCCAC
CTGCCATCGCGTTGCTGATTATGCCATATGCACCTGTGAGACGGGTATTG
AGACTATGGGAGGCAACGATAGCTGCTTATTGGTTATCCTTCGGAGCATG
GCTTCTTGAAAATCTTGGGGGGGTAAAGTTGATCATTTCAGGCGACACCT
TCACGAAGAAGGACAACGTTCTTATTATTTGTAATCATCGGACACGGCTA
GACTGGATGTGGCTCTGGTCGTGGGCTGCATATTTCGATGTGCTGTCTTC
CTATCGCGTAATACTTAAGGACTCTTTGCGCTGCTTCCCGTGGTGGGGTT
GGGGCATGTCATTATGCTTATTCCCTTTTATCCGCCGCGGCCAAAAACAC
CGTTCTACTGACTTAGCCCATTTAAAACGAAACTGCCGCTATTTAATCCA
ACTTAAGGTATCAAACTCGCTAATAATATTTCCCGAGGGCACagacctct
ccccctccaatcAAGAGCGGGATCGTAATTATGCCCTTTCTCGTAATTTG
TCTGCCTATAGGTACGTGTTGCATCCCCGCACAGGTGCCTTCCTCACGTG
CCTGGAAATATTACGTCCGCATGTGGATGCGGTGATAGACTTGACAATAG
GCTATGTCGATTATGAGCCCGGAGAGCGCCCTTCGGAgatctcgctcctc
ctcggccggcTGCCGCGTGAGATACACGTCAATCTAAAGCGGTGGGACCT
GGTCCTAACACCGCTCTTGTGTCGTGATAATATTGAAGATGCCAAAAAAT
TTCTTCAACTGTCTTTTGACCGCAAAGAGGCGTTGCTGACCTCATTCTAT
AATCGCGGCAAACTCCGATTTGACCTGGATGCGGTGGGCTCCACGTCCTC
ACGCTCGTCCTCAGAGACCTCCCCTGATCCGATTTCTCAGCTCAATGCTC
CTCGCTCGGGTTACGGCGACGATGACGCATTAGCGAATGAGCGGAGTCAG
AGCAGGTATCAGAGGTTACTCCGGAAGGGGCTTGTCGTGGCGGTTGCTGC
AGTTACAACAGTTGTGTTGATGGCATACGTCCTTCCTACAGTTTTTTTTT
GGGGATATATCGTCGCGACTTGTTTGTTGTGCATCCTAGTCACTGTATCT
TGTGAGGGATTTGACTCGCTGGAGCTGAACCTGCCGGTGCGGGGGGGCGA
CATACGTGTCCGGCGACTTCATAAAGAACATTGAGGTGTGGACAAGCGCG
TTGCACTCAAGCAAGAGGGTCAGGAGCGGGTGataaaggagaaaagaaaa
ggaagacgcAACGGATTGTACTCATGCTCCAACCTATAAATTTACTGGTT
CAGAGCCCTGGACGACATGTTGAACGCGCGAAAGAACAAATTTTTAAATA
AAGCTGGCGTAGAACCGTAAAATCATCAAAAAGAGTGTGAGCGAAAGCAT
CTTCATGCATAGTTTTCAATGATAAGAGACATTATTTataagaaaaaaaa
tgctctAGATCGCCAGCTCATACGCCTCATCCAATGAAATTGaagacgac
gaagaagagcaaaaGGCAGCAAAACGTGTACTCTCCGAATGCCTTCTCGA
CATTCTTTTCAGACGACAGCTGAAGCCTC

Coding sequence (CDS) from alignment at CM002458.1:600902..602780+

>rna1972 ID=rna1972|Name=rna1972|organism=Nannochloropsis gaditana|type=CDS|length=1299bp|location=Sequence derived from alignment at CM002458.1:600902..602780+ (Nannochloropsis gaditana)
ATGAGAAGTAACAAATCATGCAAGACTTGTCCTAATCGACTTCATGTAGG
AATCGCAATCCTTTTTCCGCTACTCCTGAGTGCTTTCTGTTTCTGCCACT
TTTTAATGCTTCCACCTGCCATCGCGTTGCTGATTATGCCATATGCACCT
GTGAGACGGGTATTGAGACTATGGGAGGCAACGATAGCTGCTTATTGGTT
ATCCTTCGGAGCATGGCTTCTTGAAAATCTTGGGGGGGTAAAGTTGATCA
TTTCAGGCGACACCTTCACGAAGAAGGACAACGTTCTTATTATTTGTAAT
CATCGGACACGGCTAGACTGGATGTGGCTCTGGTCGTGGGCTGCATATTT
CGATGTGCTGTCTTCCTATCGCGTAATACTTAAGGACTCTTTGCGCTGCT
TCCCGTGGTGGGGTTGGGGCATGTCATTATGCTTATTCCCTTTTATCCGC
CGCGGCCAAAAACACCGTTCTACTGACTTAGCCCATTTAAAACGAAACTG
CCGCTATTTAATCCAACTTAAGGTATCAAACTCGCTAATAATATTTCCCG
AGGGCACagacctctccccctccaatcAAGAGCGGGATCGTAATTATGCC
CTTTCTCGTAATTTGTCTGCCTATAGGTACGTGTTGCATCCCCGCACAGG
TGCCTTCCTCACGTGCCTGGAAATATTACGTCCGCATGTGGATGCGGTGA
TAGACTTGACAATAGGCTATGTCGATTATGAGCCCGGAGAGCGCCCTTCG
GAgatctcgctcctcctcggccggcTGCCGCGTGAGATACACGTCAATCT
AAAGCGGTGGGACCTGGTCCTAACACCGCTCTTGTGTCGTGATAATATTG
AAGATGCCAAAAAATTTCTTCAACTGTCTTTTGACCGCAAAGAGGCGTTG
CTGACCTCATTCTATAATCGCGGCAAACTCCGATTTGACCTGGATGCGGT
GGGCTCCACGTCCTCACGCTCGTCCTCAGAGACCTCCCCTGATCCGATTT
CTCAGCTCAATGCTCCTCGCTCGGGTTACGGCGACGATGACGCATTAGCG
AATGAGCGGAGTCAGAGCAGGTATCAGAGGTTACTCCGGAAGGGGCTTGT
CGTGGCGGTTGCTGCAGTTACAACAGTTGTGTTGATGGCATACGTCCTTC
CTACAGTTTTTTTTTGGGGATATATCGTCGCGACTTGTTTGTTGTGCATC
CTAGTCACTGTATCTTGTGAGGGATTTGACTCGCTGGAGCTGAACCTGCC
GGTGCGGGGGGGCGACATACGTGTCCGGCGACTTCATAAAGAACATTGA

Synonyms

Publications