rna1970, rna1970 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1970
Unique Name	rna1970
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1596
Alignment location	CM002458.1:595583..598167 +

Link to JBrowse

Properties


Property Name	Value
Product	rna (guanine-9-)-methyltransferase domain-containing
Orig transcript id	gnl\|cribi\|Naga_100002g48.4901.mrna
Orig protein id	gnl\|cribi\|Naga_100002g48.4901
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:595583..598167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g48	gene1881	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1970	rna1970-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28782.1	cds1965	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:595583..598167+
coding sequence from alignment at CM002458.1:595583..598167+

mRNA sequence

>rna1970 ID=rna1970|Name=rna1970|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp
AGATGTTTTGGTCGTTAATGAGTCCATGTAGTGTGAGTGCGTGTCGACAG
AGGTCGAGTGCGAGGTTGAGCGAACGGGAGGCAACCCTGTCGCTGGCGAG
GCCCCACATTGGAAGACGATAAGCACCCAAGCCCTGACCAGATTTTTTGA
AGTACGACTTGTTTAGCTCGTGTCCCCGACCTTCCAGAGACTGCATGATA
AATGGAAGGCAGACGTGTTATTTAGCTCACACCACTGATTGCGACAACAC
AGGTGCCACAGCTAGTCTGGATATGCGCCACAATACCGCTCACTAAAACA
TAGTACCAACGAGTGGGTAGCACTAGGACGGACATCCACAAGCGCAGTCA
AGTATCATGCAGGGTCGACGGATGCAAATTTCCCTATTCCAAATTACATC
ACTTATGGCTGTTGTGGTAGTCCATCCTGTTGCGGCCTTTGTTTCCTCGA
AGCCTGCCTTCAATTTTAGGTCGCGATCTTTTTACGGCATTGTGAACCGT
CAAGAAATTACGACTCCCTTCCGCGCAAACTTGGTAGGACCTGTGAATCC
ATCTCCCTGTAGGGTACGACTGAAAGCAGAGGAAGCAAGCAAAGAACCGG
AAGGAGATGGTGGAAGGCGACGGAAGGTAATCAGGAAGAAGCGTGTCCGC
AAGGATCGATCTCAGGAGGGTGGCGCCGCGTCAGAAGCAGTTGAGGCCTC
GCCGCCCATGGATCCACGGCTAAAACAGGCACAAGAAGACATCATGAGAA
GGGAGTTTGATCGAGAACTAGTTCTTGAAGAGTTTGCTACACCCCGTGTC
AAGGACCGGGTCCGGATTCCCACACCTAGCCCTGTCGTTGCGGACAGACA
GTTGGAGAAAGGTGAGAGAGAGGGTAACGGACGATATGAAGCCAAACAAG
ACAGGCAAAAAGAACAAAACGAGAGGTCGGACACCCTCGACGCCGCAATA
AATAGTGGTGTACCAGAGAATCTACGCTATGACCCTACCTTGGAGCTGCC
GATCCCCTCGGAGACGGTTGTCTCCCTCTCAGACCTCGCCACCAAGTTTG
ACGCCGCCATCGAGACGAAGGGCACAGCACTCCCCACACTGGCAGAGCTG
GGCAAAAAGGCGAAGGTTTCTATTTTGCGAAGGCAGCTGGAGGAGGAAGA
AAAAGCGACCAAAGAGCTGGAACCCATTGATGACTACGACCTGAGCTCCG
CCATCCTTGGGGAGGGCCGGCCTGTCTTGGGCATCGGACTACCGTATTTG
CAAAGCTGCCATACAGTCATAATTCTTGTGAGCCTTTTGTGTGCTTTCAT
TGAGTTTCCCGGCTTTCCGCTGACAAATTTCCCCTATGAGTTGCGGGATT
TTCTGAAGCAGGGCCTTGTGGCGGTCTACCTGATCAACGCCGTCTTGGCA
TGGGACAGCATCAAGGAGGCGCGGAAGCGGGACCAAAGTGTCTTTTTCTG
GGCGCTTAAATGCTTTGTCTTGGGCGCGCTTGCCCACAACGAGCTGTTGC
TTATCCGAGAAAAGCCTCAGAATGTCGCGTGAGGATGACAGGAAAAAGAG
GTAGAGAAGCGTGATGAAGAATTTACAATTTCAAGCGCTGTGACAT

protein sequence of rna1970

>rna1970-protein ID=rna1970-protein|Name=rna1970|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MEPKRSANSAAEAVRDASEDTLSIPAPPSASAPSSSTPVKGGNLFLFRKP
SRVKDVSKSVAKKLWRQEMWKVKKATKKAAKRAARQETNRQSGEVGQDDN
LNLQAATSESKNDQLLRKQRREQRKNQRHEAQMAFLRRCEEGARVVIDCG
FDSHMTEKELKSLGQQLMYVYASNKRALAPCTVHIAELGAGIQQRLSCVA
GVQNWQGFNRETRPFMETYAAERDKLVYLTSDSPNVLTQLDPGLIYVIGG
IVDRNRLKHATYNKALAQGIATARFPLREHVQLGSSPVLAVNHVFDILLE
FQYTNDWRATFAKVLPNRKSVKVNEPAVNKDS

mRNA from alignment at CM002458.1:595583..598167+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1970 ID=rna1970|Name=rna1970|organism=Nannochloropsis gaditana|type=mRNA|length=2585bp|location=Sequence derived from alignment at CM002458.1:595583..598167+ (Nannochloropsis gaditana)
TCGCACTCGACCTCTGTCGACACGCACTCACACTACATGGACTCATTAAC
GACCAAAACATCTCGCCAAGCAACCTACACTAGGTGAAATGGAGCCTAAG
AGGTCTGCCAACTCTGCAGCGGAAGCTGTGCGCGACGCGAGTGAAGACAC
GTTATCCATCCCCGCACCGCCGTCAGCCTCGgctccgtcctcttcaaCAC
CAGTTAAGGGCGGCAACCTCTTCTTATTTCGAAAACCGTCTCGCGTGAAA
GATGTTTCTAAAAGCGTAGCGAAAAAGTTGTGGCGACAAGAGATGTGGAA
GGTGAAAAAAGCGACCAAGAAAGCAGCCAAGAGGGCTGCACGACAGGAGA
CGAACAGGcagagtggggaggttggtcaGGACGACAATCTCAACTTACAG
GCTGCAACCTCAGAAAGCAAGAACGATCAACTACTGCGAAAGCAGCGCAG
AGAACAACGAAAAAATCAAAGACATGAAGCACAGATGGCGTTTCTGCGGC
GGTGTGAGGAAGGTGCGCGCGTGGTAATTGACTGCGGCTTCGATAGTCAT
ATGACTGAGAAGGAACTGAAGTCTCTGGGACAGCAACTTATGTACGTCTA
CGCCTCAAACAAGCGTGCTCTTGCTCCTTGCACCGTGCATATTGCTGAGT
AAGTTAACTGAGTAATTCACATACATGCTGTTTAGTATAAATGTAGAGGG
GTAAGACTTCTTGACGATCTTTACTTATTGGTCTCCGGCCTTGACCTACT
CTATACATTTACGGACAGACTTGGAGCTGGCATACAACAACGACTTTCGT
GTGTAGCTGGAGTGCAGAATTGGCAAGGGTTTAATCGAGAGACACGGCCC
TTTATGGAGACGTACGCAGCAGAGAGAGACAAGCTCGTTTACTTGACTTC
GGACTCGCCCAACGTCCTCACACAATTAGACCCTGGGCTGATCTACGTGA
TTGGAGGTATAGTGGATCGAAACCGCCTCAAACATGCTACTTACAATAAA
GCGCTTGCACAGGGTATCGCCACAGCCCGGTTCCCGTTGCGAGAACACGT
GCAGCTGGGGTCAAGCCCGGTCCTGGCTGTCAACCACGTATTCGATATCC
TGCTGGAATTTCAATACACGAATGATTGGCGCGCTACTTTCGCGAAAGTT
TTACCCAACAGAAAGTCTGTAAAAGTAAATGAACCAGCAGTCAACAAAGA
CAGCTAAGGAATCCGAAAAAGAATGGAAAAAGCTGAAGCCTTGACCGATG
GCAGGAGCACCGTGAGGCAAGCTTTGGCTTCTCTCTTACATGCGTATGAT
TTCCAAAAAAGTAGATTCATTGAACGATGATCCAGCTCCTTTTTCACAAG
TCACTTTCGAGGAAATTGAGATAATGCGATCCGAATCAGGTCACCGATCT
CCTCCGACAGGTGATCAATATTCGCAGCCTCCCTCAGACTGTTTTGAAAA
TTTTCGTCTTTGAACAGTAATTCTCGAGTGCAGTTAAATGAATATAAATg
ttctggggagggagaagggtaaGTCTATGAGCATCATAGGACGTAAAACA
TAAATCGAGCAGCAAACTTACGGATAGCGGTTGCAGCTCGGTGAATCAGA
GTTGTTTCGCCACTTCGAAGCAACGACCCCCAAGTATTCAACGCAATGGG
AGACAAGACTGCCATGGATCGGACTATTTCTGTTGTGTTTGGCAAACAGG
GTGTGTATCATATCAAAACACGCGCTTTCAAACCGGAAGGTCCCTCGCCG
GCCTACAAGGATGCGTGAGTCTTTTTCTGAATTACCTTCGTCCTTGGAAG
CCATAGCTAATCCTCCTGCTGCAGCACGAGACAGCGGAAGATCTCTCGTA
TAATCTTCTGCAAGACTCAGCCAGTATTTAAGAGTCTCAGGTTTCCCAAG
CTTAGCAAGCACAAGGGGATGGCTCACCATGTTGCAAAGCGCCTCGGTTG
CGGCCCGTCTTACAAGCGTTTGCTCCGAAAATTgcaaagagaagaaagat
tCTATCCCTCCATTAAGCGCTATCGAATCTATGCACTCCTTTCCATACGA
TGCGAGATTCGTTAGAGCCAGTGACGATTCGAATTGTTGTAGGGCGGTTG
CTCTGACATTGCGACATAGCGATACAAGTGCGTGTATCGGAGCCGTGCGC
TGGTGACTTGCCAGAACCTTGGGATCTGTAGTAATGAGGCACTATAATAT
GGAAAAAGCGAGAGGTTTCGCATTTATGTGGCAGGATGCAAGCAAACAAA
TGATAATGCGAATCCCATCTCTGACAGCACTTACTTTCGCCAGAGCCTGC
ACCGATTTCAGACGTGTAACTTCCAGCCCTCTATTTTCCTTAGCCAGGCC
TAGACAAGTGTTGTATCCCCCGTCCTGTATAAACTGTCCACGAAGTGCTG
GAATTGTGGCAATATTTAGGAGTGCTGTGGCAAATTGATCGAGAGTACTC
TCACTTATTTCCGTGTGTGATACTAGTCTGCGTATGATTCCGATAACATT
TCGCTGGACTAGTTCTCGAATGCGTTTCTCTACATCTTGTGCAGAGTCTA
CAGTGTCCAAGTCTTCTTCTATTGCTGTCTGTGGA

Coding sequence (CDS) from alignment at CM002458.1:595583..598167+

>rna1970 ID=rna1970|Name=rna1970|organism=Nannochloropsis gaditana|type=CDS|length=1998bp|location=Sequence derived from alignment at CM002458.1:595583..598167+ (Nannochloropsis gaditana)
ATGGAGCCTAAGAGGTCTGCCAACTCTGCAGCGGAAGCTGTGCGCGACGC
GAGTGAAGACACGTTATCCATCCCCGCACCGCCGTCAGCCTCGgctccgt
cctcttcaaCACCAGTTAAGGGCGGCAACCTCTTCTTATTTCGAAAACCG
TCTCGCGTGAAAGATGTTTCTAAAAGCGTAGCGAAAAAGTTGTGGCGACA
AGAGATGTGGAAGGTGAAAAAAGCGACCAAGAAAGCAGCCAAGAGGGCTG
CACGACAGGAGACGAACAGGcagagtggggaggttggtcaGGACGACAAT
CTCAACTTACAGGCTGCAACCTCAGAAAGCAAGAACGATCAACTACTGCG
AAAGCAGCGCAGAGAACAACGAAAAAATCAAAGACATGAAGCACAGATGG
CGTTTCTGCGGCGGTGTGAGGAAGGTGCGCGCGTGGTAATTGACTGCGGC
TTCGATAGTCATATGACTGAGAAGGAACTGAAGTCTCTGGGACAGCAACT
TATGTACGTCTACGCCTCAAACAAGCGTGCTCTTGCTCCTTGCACCGTGC
ATATTGCTGAACTTGGAGCTGGCATACAACAACGACTTTCGTGTGTAGCT
GGAGTGCAGAATTGGCAAGGGTTTAATCGAGAGACACGGCCCTTTATGGA
GACGTACGCAGCAGAGAGAGACAAGCTCGTTTACTTGACTTCGGACTCGC
CCAACGTCCTCACACAATTAGACCCTGGGCTGATCTACGTGATTGGAGGT
ATAGTGGATCGAAACCGCCTCAAACATGCTACTTACAATAAAGCGCTTGC
ACAGGGTATCGCCACAGCCCGGTTCCCGTTGCGAGAACACGTGCAGCTGG
GGTCAAGCCCGGTCCTGGCTGTCAACCACGTATTCGATATCCTGCTGGAA
TTTCAATACACGAATGATTGGCGCGCTACTTTCGCGAAAGTTTTACCCAA
CAGAAAGTCTGTAAAAGTAAATGAACCAGCAGTCAACAAAGACAGCTAAA
TGGAGCCTAAGAGGTCTGCCAACTCTGCAGCGGAAGCTGTGCGCGACGCG
AGTGAAGACACGTTATCCATCCCCGCACCGCCGTCAGCCTCGgctccgtc
ctcttcaaCACCAGTTAAGGGCGGCAACCTCTTCTTATTTCGAAAACCGT
CTCGCGTGAAAGATGTTTCTAAAAGCGTAGCGAAAAAGTTGTGGCGACAA
GAGATGTGGAAGGTGAAAAAAGCGACCAAGAAAGCAGCCAAGAGGGCTGC
ACGACAGGAGACGAACAGGcagagtggggaggttggtcaGGACGACAATC
TCAACTTACAGGCTGCAACCTCAGAAAGCAAGAACGATCAACTACTGCGA
AAGCAGCGCAGAGAACAACGAAAAAATCAAAGACATGAAGCACAGATGGC
GTTTCTGCGGCGGTGTGAGGAAGGTGCGCGCGTGGTAATTGACTGCGGCT
TCGATAGTCATATGACTGAGAAGGAACTGAAGTCTCTGGGACAGCAACTT
ATGTACGTCTACGCCTCAAACAAGCGTGCTCTTGCTCCTTGCACCGTGCA
TATTGCTGAACTTGGAGCTGGCATACAACAACGACTTTCGTGTGTAGCTG
GAGTGCAGAATTGGCAAGGGTTTAATCGAGAGACACGGCCCTTTATGGAG
ACGTACGCAGCAGAGAGAGACAAGCTCGTTTACTTGACTTCGGACTCGCC
CAACGTCCTCACACAATTAGACCCTGGGCTGATCTACGTGATTGGAGGTA
TAGTGGATCGAAACCGCCTCAAACATGCTACTTACAATAAAGCGCTTGCA
CAGGGTATCGCCACAGCCCGGTTCCCGTTGCGAGAACACGTGCAGCTGGG
GTCAAGCCCGGTCCTGGCTGTCAACCACGTATTCGATATCCTGCTGGAAT
TTCAATACACGAATGATTGGCGCGCTACTTTCGCGAAAGTTTTACCCAAC
AGAAAGTCTGTAAAAGTAAATGAACCAGCAGTCAACAAAGACAGCTAA

Synonyms

Publications