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Properties
| Property Name | Value |
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100002g54.4934.mrna |
| Orig protein id | gnl|cribi|Naga_100002g54.4934 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| CM002458.1 | supercontig | CM002458.1:584366..587884 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1964 ID=rna1964|Name=rna1964|organism=Nannochloropsis gaditana|type=mRNA|length=672bp ATGGCGTCCGGTGGCATGGCAGAGCTGAGAGCTGCTGAGCAGAAGGCTGC TCAGATCGTCCAAGAGGCGCGGGCAGGTAATAATTCAGATAGTGACATGA CATGCCCGCCAATCGTTGACTTGCATCCAGTCAGTGAAAACATATCATGC GCAAACTTAATGCTGAGGTGTAGAGGCAGAGATGCATCACGGGGCCAGCG ACTCAAGGAGGCCACGGTGGAAGCGCGCCGGGTCATTGAAGGCTACCGGG ACGACAAAGAAAAACAGTTTCAAGATTTTGTGAAAACGAAATATGGAAGC AGCGGCTCACAGACGGCAGACCTAGACAGACAAACAGAGGCCGAACTTGC CAAGCTCAGCGCGGACTTCAAACACAACAAAGATGTAGTGTTGGATGTGC TTGTGGATAAAGTTACCAACGTCAAGACCTATATGACAGAGAAGAGCGCG TTTGAATTTGTCTTGCGTGATAAAGCGCCACCACTTTCGCGTGTGTCCAT GGATGGCAAGACCACCACAAATTGGAGCGCCATGGAGGAGCTGCCTGGGA TGACCAGGCGGAAATTTTCACATCATATAGGGGTGCATGCTCGGGTGATA CGGGTCAGCCAGAACAAAAAGAATTCAAGGCCGAGTTATAAGGGCACGAA TTGTGTGGGAATACAGTTGTAG back to topprotein sequence of rna1964 >rna1964-protein ID=rna1964-protein|Name=rna1964|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp MNCKSSTTILDRDDLQEQKSRRSLYELEKYTSDCKKAAPPNNALFEEATL QEKATESVEMESQTLRSQLDEESLKAGTLIYGTSVTSSSSRRHSSDVGAL VHALDASEAAKKSLEARILQEQQSAEQLRAELQQFRLKWDDALRNAVHEE ETTARSLRKQIEEQEEVVKILRHNLSNVERARDEMGVRADEAGRQGTREE LSQEEKEEIQSLRDEIEVYKAELVSFRREQLEKKRTTAMNVAVSEHHSST HEADMELPEQPADSTIQRLEDVNRLLSERVRTLEEALSQVGEMEVEKREL MRCVDALKDALEQEREGHQQHFEKTVTTLNEEISRIAAEMHQMEKAKQRV EKDQQNISMFVLRRMLMNIRTKHMLKNSRRAFYRWVASTSSMQLEQLQTI RESGSQRLEGAQGEEVRQLEAENRALLEELKTKPAILDERVFSIQDGKDR EKRWRSEGISSFAFKIIFAVLLFLALERGFVLHDGGYDLYYLDSPRVTM back to topmRNA from alignment at CM002458.1:584366..587884+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1964 ID=rna1964|Name=rna1964|organism=Nannochloropsis gaditana|type=mRNA|length=3519bp|location=Sequence derived from alignment at CM002458.1:584366..587884+ (Nannochloropsis gaditana) CTCTGGCCTCCATTTCACCACATTGATCCACAAACTCTTGACATTAAACA
GGGTATCTTTATAGACCGCCATCTGAAAGTCCGAGCGGTCTTTTCCAGCT
GCCCAACACCTCTTGCCGTCTATTTACAAGTAGCTATTGCCACATCGGAG
ACGCCCATGTCGACGGCATTCACGACGAGCAACCATAGTGCTTTCAATGA
CATGCCACCACCGCAGCCATCATCGTCCCGCACATCAAAGCAGCTTGATA
AGTATAGCAGTGATGTTCCTGTAACTTCCGCCGGAGTCAGGCTGTCGTTC
GAGTGCGAATACGACGCGGAATTGGCGCCCTCGCGCCCTCGTAACTACAT
AGAGCAACCCCTGAACCAGCTTTCACAGGCCCAGAATCCAGTAGCTAGCA
CCGATGGCGAGAACTCCAACGCCATTGACGAACTTGGGTGGGCAGAGAAT
ATCGATGAAGAGAtacggaggcggagagaggaacTGGAGCGAGTACGCGA
TGAGAGTCGAGCATCCGTTTTCTTGCTCGAAGACAAGGCCAAGGGCGGCC
TGAGTCCCGCATTCAGTCCCGCAGTGCATGAGTTTGTCTCTCTCGTCATG
GCGGGCTCAGTGCCGTCTTCTGCTTTCTCCTCAACTTACCCGGTCGCCCA
TAAAGAGGGCATGCTCGAAACTCCTAATGGGGACTACCTGCAGACCCCAT
CCCattccattttttcttctcgcgCAAAAGGCGCCCTAGGCTTTATCAAA
GATGAAGCTCTTCGATTGAGAGGTAagaaaaattgaaaattGTCGTTGCA
CGTTGAAGGACGTGATGGGGAGTGATGGGGGGAGCTTCTCTCTCGCCATA
TTCGGGCCGACCCCTCGATGAGGACGTACCAGTTCCTTTTCATGTCGGTC
TTTTTCACTCCTTTTCATTTCGTCATACCTGCTCATAAATTTTGTATCGA
ATGACAGCCGATTTGGAGCAGCAAGCAGGCCTTCTTGCGAGCGAAAGGCA
GCGTAGTGAACAGCTGCAAGAAGAGATGGCGGAGTTGACGAGGCAGCGAA
AGAGTCTGTCGCAGGAGTTGGAGGCTCGTGAACTGAAAATTGTAAATTAT
GAAGATTCTTTAGGGGAGCTGCAGACGATGGTGGCGAATGAGCGCGAAGC
GAACCAGCATCGCGAGGAAAATTTACAGGTAGATTTAGGGTGCGCGTGTG
AGAAACGACTGTCCGATACTCGCTGTAGTTCTGTGGTCTGGTGACGTTTT
GGTGGGCTTCTAATAATATTAAAATCATTGGTTACAGGCACACATAGAAG
AGCTACAGCTTGCTTTGGAACGTCACACGCAGCGGGACCATGAATTGCAA
GAGTTCCACGACCATACTGGACAGAGACGATTTGCAAGAACagaagagca
ggaggtcCTTATATGTGAGTTACAGAAATCTGTTATCGAGCTGCAGTATC
GCTTGGAAGGAGCGGAAAATGGTCAGACATCAGTAAAATAccttgaggag
gagctgaaagTCAAAAATTCTCGGATACAGGAGCTTGAAAAGTATACATC
GGATTGTAAAAAGGCCGCTCCTCCTAACAACGCTTTGTTTGAGGAGGCAA
CGCTGCAGGAAAAGGCGACGGAGTCCGTCGAAATGGAAAGTCAAACGCTT
CGAAGCCAACTAGATGAAGAATCACTGAAGGCAGGAACTTTGATTTATGG
AACTTCTGTGACTTCATCGTCTTCGCGGCGGCATTCATCGGATGTTGGTG
CTCTTGTGCATGCCTTGGATGCCTCGGAAGCCGCAAAAAAATCTTTGGAA
GCACGGATCTTGCAGGAGCAACAGTCAGCAGAGCAGCTTAGGGCGGAATT
GCAGCAATTTCGATTAAAATGGGATGATGCCTTACGCAATGCGGTACATG
AAGAGGAGACTACAGCGCGATCTTTGCGGAAACAAATCGAAGAACAGGAA
GAGGTTGTCAAAATCCTCCGTCATAATCTATCCAATGTAGAACGGGCGCG
CGACGAAATGGGAGTGAGGGCGGATGAAGCGGGCAGACAGGGCACGCGCG
AGGAGCTCTcacaggaagagaaagaggagataCAATCCCTCCGGGATGAG
ATCGAGGTTTATAAAGCGGAATTGGTTTCTTTCCGAAGGGAGCAacttga
aaagaaaagaacaACGGCTATGAATGTAGCGGTATCCGAGCACCATTCAT
CAACGCATGAAGCTGATATGGAGCTGCCTGAACAGCCCGCGGACTCAACC
ATACAGAGactggaggacgtgaataGACTTCTATCAGAGCGCGTTAGGAC
TCTGGAAGAGGCGCTGAGCCAGGTTGGCGAGGTAATGGTAGTTGACGGAT
GTGGCTGTGAGTGACTGGTTTTCCCCTTGTGTAACATCACATGATTTTCC
ATTCCGGAGTACAGATGGAGGTTGAAAAACGGGAGCTGATGCGCTGCGTG
GATGCTCTAAAAGATGCTCTagagcaggagcgggagggtCATCAACAGCA
TTTCGAAAAAACGGTATGGCGGCGAAATTAGTATGTGAACGGATTCCTAT
AACGGATTCCTACACAAATCAATCTagtctttctccctttctatCTATAT
TTTGGGTGTAATTTGTGTTATTGTCTTGGATGTAATTTGTGTGATAGTCT
TTTGCTAAAGCCAGTCATATCCTCGCGCGTGCAGGTCACTACCCTTAACG
AGGAGATAAGTCGAATCGCCGCAGAAATGCATCAAATGGAAAAAGCGAAG
CAAAGAGTTGAAAAAGACCAGCAAAACATTTCCATGTTTGTGCTTCGGAG
AATGTTGATGAATATTCGCACAAAACACATGCTCAAAAACTCGCGGCGAG
CATTTTATCGATGGGTAGCATCCACTAGCAGCATGCAGCTGGAGCAGCTA
CAGACAATTCGAGAAAGCGGAAGCCAACGCTTGGAGGGCGCTCAGGGCGA
AGAAGTGAGGCAGCTTGAGGCTGAAAACCGTGCCTTACTTGAAGAGTTAA
AGACGAAACCAGCAATCCTTGATGAAAGGGTGTTTTCGATTCAAGATGGG
AAAGACCGGGAAAAGCGCTGGCGTTCGGAAGGAATTAGCTCCTTCGCTTT
CAAAATCATTTTTGcagtccttctctttctaGCCCTGGAGCGGGGCTTTG
TATTGCATGACGGAGGGTATGATTTGTACTACTTAGATTCCCCACGCGTT
ACCATGTGAAATGCCAGAAGTGAAAAATAGTCTGCAAATGATATTCTTTT
GGCAAGAGTGCGGGTATTTTTTCATTTCTTTTGGCATGTCTTTTCATGAT
ATATTCAGGCATTAAATTCCTTCTCTAGAAGACAAGACTTACTTCACCGT
CCACCCCATTCACGCTTCTGGAAGAGATGCTGAATGTTGTTGTCCCAATT
TTCTTCCCCGTGCCCTTCATGATTTGAACATAAGACGATCTTTCGCTCAG
TCTTCAACAGATAAGTCATCCCTGCAAAACACGTGCAACACGATATACTG
GCATTTACCATGTCGACGC back to topCoding sequence (CDS) from alignment at CM002458.1:584366..587884+ >rna1964 ID=rna1964|Name=rna1964|organism=Nannochloropsis gaditana|type=CDS|length=6000bp|location=Sequence derived from alignment at CM002458.1:584366..587884+ (Nannochloropsis gaditana) ATGAATTGCAAGAGTTCCACGACCATACTGGACAGAGACGATTTGCAAGA ACagaagagcaggaggtcCTTATATGAGCTTGAAAAGTATACATCGGATT GTAAAAAGGCCGCTCCTCCTAACAACGCTTTGTTTGAGGAGGCAACGCTG CAGGAAAAGGCGACGGAGTCCGTCGAAATGGAAAGTCAAACGCTTCGAAG CCAACTAGATGAAGAATCACTGAAGGCAGGAACTTTGATTTATGGAACTT CTGTGACTTCATCGTCTTCGCGGCGGCATTCATCGGATGTTGGTGCTCTT GTGCATGCCTTGGATGCCTCGGAAGCCGCAAAAAAATCTTTGGAAGCACG GATCTTGCAGGAGCAACAGTCAGCAGAGCAGCTTAGGGCGGAATTGCAGC AATTTCGATTAAAATGGGATGATGCCTTACGCAATGCGGTACATGAAGAG GAGACTACAGCGCGATCTTTGCGGAAACAAATCGAAGAACAGGAAGAGGT TGTCAAAATCCTCCGTCATAATCTATCCAATGTAGAACGGGCGCGCGACG AAATGGGAGTGAGGGCGGATGAAGCGGGCAGACAGGGCACGCGCGAGGAG CTCTcacaggaagagaaagaggagataCAATCCCTCCGGGATGAGATCGA GGTTTATAAAGCGGAATTGGTTTCTTTCCGAAGGGAGCAacttgaaaaga aaagaacaACGGCTATGAATGTAGCGGTATCCGAGCACCATTCATCAACG CATGAAGCTGATATGGAGCTGCCTGAACAGCCCGCGGACTCAACCATACA GAGactggaggacgtgaataGACTTCTATCAGAGCGCGTTAGGACTCTGG AAGAGGCGCTGAGCCAGGTTGGCGAGATGGAGGTTGAAAAACGGGAGCTG ATGCGCTGCGTGGATGCTCTAAAAGATGCTCTagagcaggagcgggaggg tCATCAACAGCATTTCGAAAAAACGGTCACTACCCTTAACGAGGAGATAA GTCGAATCGCCGCAGAAATGCATCAAATGGAAAAAGCGAAGCAAAGAGTT GAAAAAGACCAGCAAAACATTTCCATGTTTGTGCTTCGGAGAATGTTGAT GAATATTCGCACAAAACACATGCTCAAAAACTCGCGGCGAGCATTTTATC GATGGGTAGCATCCACTAGCAGCATGCAGCTGGAGCAGCTACAGACAATT CGAGAAAGCGGAAGCCAACGCTTGGAGGGCGCTCAGGGCGAAGAAGTGAG GCAGCTTGAGGCTGAAAACCGTGCCTTACTTGAAGAGTTAAAGACGAAAC CAGCAATCCTTGATGAAAGGGTGTTTTCGATTCAAGATGGGAAAGACCGG GAAAAGCGCTGGCGTTCGGAAGGAATTAGCTCCTTCGCTTTCAAAATCAT TTTTGcagtccttctctttctaGCCCTGGAGCGGGGCTTTGTATTGCATG ACGGAGGGTATGATTTGTACTACTTAGATTCCCCACGCGTTACCATGTGA ATGAATTGCAAGAGTTCCACGACCATACTGGACAGAGACGATTTGCAAGA ACagaagagcaggaggtcCTTATATGAGCTTGAAAAGTATACATCGGATT GTAAAAAGGCCGCTCCTCCTAACAACGCTTTGTTTGAGGAGGCAACGCTG CAGGAAAAGGCGACGGAGTCCGTCGAAATGGAAAGTCAAACGCTTCGAAG CCAACTAGATGAAGAATCACTGAAGGCAGGAACTTTGATTTATGGAACTT CTGTGACTTCATCGTCTTCGCGGCGGCATTCATCGGATGTTGGTGCTCTT GTGCATGCCTTGGATGCCTCGGAAGCCGCAAAAAAATCTTTGGAAGCACG GATCTTGCAGGAGCAACAGTCAGCAGAGCAGCTTAGGGCGGAATTGCAGC AATTTCGATTAAAATGGGATGATGCCTTACGCAATGCGGTACATGAAGAG GAGACTACAGCGCGATCTTTGCGGAAACAAATCGAAGAACAGGAAGAGGT TGTCAAAATCCTCCGTCATAATCTATCCAATGTAGAACGGGCGCGCGACG AAATGGGAGTGAGGGCGGATGAAGCGGGCAGACAGGGCACGCGCGAGGAG CTCTcacaggaagagaaagaggagataCAATCCCTCCGGGATGAGATCGA GGTTTATAAAGCGGAATTGGTTTCTTTCCGAAGGGAGCAacttgaaaaga aaagaacaACGGCTATGAATGTAGCGGTATCCGAGCACCATTCATCAACG CATGAAGCTGATATGGAGCTGCCTGAACAGCCCGCGGACTCAACCATACA GAGactggaggacgtgaataGACTTCTATCAGAGCGCGTTAGGACTCTGG AAGAGGCGCTGAGCCAGGTTGGCGAGATGGAGGTTGAAAAACGGGAGCTG ATGCGCTGCGTGGATGCTCTAAAAGATGCTCTagagcaggagcgggaggg tCATCAACAGCATTTCGAAAAAACGGTCACTACCCTTAACGAGGAGATAA GTCGAATCGCCGCAGAAATGCATCAAATGGAAAAAGCGAAGCAAAGAGTT GAAAAAGACCAGCAAAACATTTCCATGTTTGTGCTTCGGAGAATGTTGAT GAATATTCGCACAAAACACATGCTCAAAAACTCGCGGCGAGCATTTTATC GATGGGTAGCATCCACTAGCAGCATGCAGCTGGAGCAGCTACAGACAATT CGAGAAAGCGGAAGCCAACGCTTGGAGGGCGCTCAGGGCGAAGAAGTGAG GCAGCTTGAGGCTGAAAACCGTGCCTTACTTGAAGAGTTAAAGACGAAAC CAGCAATCCTTGATGAAAGGGTGTTTTCGATTCAAGATGGGAAAGACCGG GAAAAGCGCTGGCGTTCGGAAGGAATTAGCTCCTTCGCTTTCAAAATCAT TTTTGcagtccttctctttctaGCCCTGGAGCGGGGCTTTGTATTGCATG ACGGAGGGTATGATTTGTACTACTTAGATTCCCCACGCGTTACCATGTGA ATGAATTGCAAGAGTTCCACGACCATACTGGACAGAGACGATTTGCAAGA ACagaagagcaggaggtcCTTATATGAGCTTGAAAAGTATACATCGGATT GTAAAAAGGCCGCTCCTCCTAACAACGCTTTGTTTGAGGAGGCAACGCTG CAGGAAAAGGCGACGGAGTCCGTCGAAATGGAAAGTCAAACGCTTCGAAG CCAACTAGATGAAGAATCACTGAAGGCAGGAACTTTGATTTATGGAACTT CTGTGACTTCATCGTCTTCGCGGCGGCATTCATCGGATGTTGGTGCTCTT GTGCATGCCTTGGATGCCTCGGAAGCCGCAAAAAAATCTTTGGAAGCACG GATCTTGCAGGAGCAACAGTCAGCAGAGCAGCTTAGGGCGGAATTGCAGC AATTTCGATTAAAATGGGATGATGCCTTACGCAATGCGGTACATGAAGAG GAGACTACAGCGCGATCTTTGCGGAAACAAATCGAAGAACAGGAAGAGGT TGTCAAAATCCTCCGTCATAATCTATCCAATGTAGAACGGGCGCGCGACG AAATGGGAGTGAGGGCGGATGAAGCGGGCAGACAGGGCACGCGCGAGGAG CTCTcacaggaagagaaagaggagataCAATCCCTCCGGGATGAGATCGA GGTTTATAAAGCGGAATTGGTTTCTTTCCGAAGGGAGCAacttgaaaaga aaagaacaACGGCTATGAATGTAGCGGTATCCGAGCACCATTCATCAACG CATGAAGCTGATATGGAGCTGCCTGAACAGCCCGCGGACTCAACCATACA GAGactggaggacgtgaataGACTTCTATCAGAGCGCGTTAGGACTCTGG AAGAGGCGCTGAGCCAGGTTGGCGAGATGGAGGTTGAAAAACGGGAGCTG ATGCGCTGCGTGGATGCTCTAAAAGATGCTCTagagcaggagcgggaggg tCATCAACAGCATTTCGAAAAAACGGTCACTACCCTTAACGAGGAGATAA GTCGAATCGCCGCAGAAATGCATCAAATGGAAAAAGCGAAGCAAAGAGTT GAAAAAGACCAGCAAAACATTTCCATGTTTGTGCTTCGGAGAATGTTGAT GAATATTCGCACAAAACACATGCTCAAAAACTCGCGGCGAGCATTTTATC GATGGGTAGCATCCACTAGCAGCATGCAGCTGGAGCAGCTACAGACAATT CGAGAAAGCGGAAGCCAACGCTTGGAGGGCGCTCAGGGCGAAGAAGTGAG GCAGCTTGAGGCTGAAAACCGTGCCTTACTTGAAGAGTTAAAGACGAAAC CAGCAATCCTTGATGAAAGGGTGTTTTCGATTCAAGATGGGAAAGACCGG GAAAAGCGCTGGCGTTCGGAAGGAATTAGCTCCTTCGCTTTCAAAATCAT TTTTGcagtccttctctttctaGCCCTGGAGCGGGGCTTTGTATTGCATG ACGGAGGGTATGATTTGTACTACTTAGATTCCCCACGCGTTACCATGTGA ATGAATTGCAAGAGTTCCACGACCATACTGGACAGAGACGATTTGCAAGA ACagaagagcaggaggtcCTTATATGAGCTTGAAAAGTATACATCGGATT GTAAAAAGGCCGCTCCTCCTAACAACGCTTTGTTTGAGGAGGCAACGCTG CAGGAAAAGGCGACGGAGTCCGTCGAAATGGAAAGTCAAACGCTTCGAAG CCAACTAGATGAAGAATCACTGAAGGCAGGAACTTTGATTTATGGAACTT CTGTGACTTCATCGTCTTCGCGGCGGCATTCATCGGATGTTGGTGCTCTT GTGCATGCCTTGGATGCCTCGGAAGCCGCAAAAAAATCTTTGGAAGCACG GATCTTGCAGGAGCAACAGTCAGCAGAGCAGCTTAGGGCGGAATTGCAGC AATTTCGATTAAAATGGGATGATGCCTTACGCAATGCGGTACATGAAGAG GAGACTACAGCGCGATCTTTGCGGAAACAAATCGAAGAACAGGAAGAGGT TGTCAAAATCCTCCGTCATAATCTATCCAATGTAGAACGGGCGCGCGACG AAATGGGAGTGAGGGCGGATGAAGCGGGCAGACAGGGCACGCGCGAGGAG CTCTcacaggaagagaaagaggagataCAATCCCTCCGGGATGAGATCGA GGTTTATAAAGCGGAATTGGTTTCTTTCCGAAGGGAGCAacttgaaaaga aaagaacaACGGCTATGAATGTAGCGGTATCCGAGCACCATTCATCAACG CATGAAGCTGATATGGAGCTGCCTGAACAGCCCGCGGACTCAACCATACA GAGactggaggacgtgaataGACTTCTATCAGAGCGCGTTAGGACTCTGG AAGAGGCGCTGAGCCAGGTTGGCGAGATGGAGGTTGAAAAACGGGAGCTG ATGCGCTGCGTGGATGCTCTAAAAGATGCTCTagagcaggagcgggaggg tCATCAACAGCATTTCGAAAAAACGGTCACTACCCTTAACGAGGAGATAA GTCGAATCGCCGCAGAAATGCATCAAATGGAAAAAGCGAAGCAAAGAGTT GAAAAAGACCAGCAAAACATTTCCATGTTTGTGCTTCGGAGAATGTTGAT GAATATTCGCACAAAACACATGCTCAAAAACTCGCGGCGAGCATTTTATC GATGGGTAGCATCCACTAGCAGCATGCAGCTGGAGCAGCTACAGACAATT CGAGAAAGCGGAAGCCAACGCTTGGAGGGCGCTCAGGGCGAAGAAGTGAG GCAGCTTGAGGCTGAAAACCGTGCCTTACTTGAAGAGTTAAAGACGAAAC CAGCAATCCTTGATGAAAGGGTGTTTTCGATTCAAGATGGGAAAGACCGG GAAAAGCGCTGGCGTTCGGAAGGAATTAGCTCCTTCGCTTTCAAAATCAT TTTTGcagtccttctctttctaGCCCTGGAGCGGGGCTTTGTATTGCATG ACGGAGGGTATGATTTGTACTACTTAGATTCCCCACGCGTTACCATGTGA back to top
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