rna195, rna195 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna195
Unique Name	rna195
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1620
Alignment location	CM002455.1:509175..512803 +

Link to JBrowse

Properties


Property Name	Value
Product	molybdenum cofactor sulfurase
Orig transcript id	gnl\|cribi\|Naga_100013g22.9792.mrna
Orig protein id	gnl\|cribi\|Naga_100013g22.9792
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:509175..512803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g22	gene186	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna195	rna195-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30504.1	cds195	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:509175..512803+
coding sequence from alignment at CM002455.1:509175..512803+

mRNA sequence

>rna195 ID=rna195|Name=rna195|organism=Nannochloropsis gaditana|type=mRNA|length=1620bp
GATACAATTTGAGGAAAGGAAACACTCGTCACAGGTATGGAAACCAATTT
TCCCCTTTAAATTTCGTCCTCGATTACGAAGAGTCAAAAATGACCCGCGT
TGAATTTGCGAACCAAGAATGGGGGGCTGCCTGACTTGCTGCCTCGTGCT
CTCCCTCTCGCTGCCTCGCGCGAAGTCTCGCGTTCGATTATGTCACCATG
TTCCTGGAACCCCTCAATACCCTCTGCCTTTGCTCATGCCCAGCACTAAG
AGAGGGAGCCTTTTGCAATCAAGCTGGCCTGTGGGCCGCGGGCGTGGCGG
AGGAATATCACGAGGAAAAGGCGAGACGCAGCTTAGGAGGGCGTGACGGC
TACCTCCGGTCTTGTTCCACCTTCCTTGGCACCGCTTTCCCTCTCCTTTC
CTCTTCAACAAAGCACGGCCTCCTCCTCCGTTGTCACGACGGAACCACGC
AGCACGTATGGCGACGCGGGATTTGACACGGAAGTACGTCGACTACAGGA
CAACGGCCAAGATAATAGGTCGCAATTCTCTCTCCCCCCTCAGCGGCTAC
ACGATGGACAGTGGCCTCTTGGAGGACGCTTCGCAAGACAGTAACACAGG
GTGGGCGGCCGCACGCATGCAATTACCGCCAGCATGGGTTGATTTAGTGG
ACCGTGTGGATACATTGACGGCCCAAATAGAGGCCAAAATGAAGGAGTTG
GAGGCTCTGCATCGAAAGCGATTGTTGGTGGGGTTCGACGACAGCGAGGC
GGCGCGCGAGCGGGACATCGACTTCATAACGCAGGAGATCACGGGGATGC
TCCGGGAGGCGGAGTCGGCGCTCAAGCAGCTGGGGGGGGGAGGGGCAGAT
GGAGGAGGAGGGACGGAAAAGCTTGTGACACGGAATGTACAAAAATCCAT
GGCAAAACGAATTCAGGCGTTGTCGATCGAATTTCGGGCCTCGCAGAAGC
ATTACATGGCTCAATTAAAAGCACAGAAGTCGGGCGCCGCTCCACTCTTC
GACTTCCTTGCTGCCGGCCATGATACTTTGGAGACGGAGCGACGCGCGCG
GGAAGAAAACGGGATGGAGGGTGGGTTCACGCCGGAGCAACTGGCAGTTT
TGGAGGAGCAGGAGGTGACTACGGCGGAGAGGGACCGGGAGATCCAGCAC
ATCGCCCGGTCCATCGAGGAGCTCTCGCAGATATTCAGGGAGCTGGCCGT
GTTGGTCATCGACCAGGGGACCGTGCTCGATCGGATCGACTTCAACATGG
AGCAGGTGGTGGAGCACACAAAGGAGGGGGTGCACCAGCTGGTCAGGGCC
GAGGAGAACCAAAAGTCGGCCAAGGCGACGCGATGTATCGTCTGCTTGCT
CTGCTCCATTTTTGTCATGGTCCTCATTCTTATCATCAAACATCGGTGAC
TTCTGCCCAAAGGCCCCAGACATTTTCCCCCGAAAGGGCACATGTAGCCT
ATGGTAAACTGCTTTCATCTTCCACCTTCCCCAGTTCTTGAATCGAACCT
TTAAGATGAGAACGCCATGACAAATGAGTGTCGAACTGTTTGTCAAGGTC
TCCCGGAGACCTTCATTTTTTGGCAAGCAACAAAAAGTACTTCTACTGGC
TCCAGCGTCAGAAACGTCGG

protein sequence of rna195

>rna195-protein ID=rna195-protein|Name=rna195|organism=Nannochloropsis gaditana|type=polypeptide|length=1039bp
MHHRQHHPTHASLINRSTWDDKKQEMAAIPDPSVTSIHPSAARLSKAAFL
DVYAAYGYREITQDNGGSAAPCAFNIEKQAEPGKFQESARTTLCRDVEPN
PGSSLCSKPTHGKLIVGALEHARQDSATPTPCSDAELVPVDTLRRQEFPA
LYHPRENPQGAIYLDHAGATLYAQSQIARCHSHLQESIFGNPHSKGPVAS
ATADLVEEARSSVLAHFHAPPEDWTVVFTSGATAALKMAAELFPWRGHGT
SRLIYAHNAHTSVLGMREIALEAGAGFACLPPSVQYGEKADVALAAALHE
AMHQTGSSSPFPRHENGVSTEDGPTETFPETEHLLVFPAECNFSGRTLDW
ARLRQALARLRTTDAEQRVSVLLDAAKYVGTSPLDLGSFQEGEVDMLSLS
FYKLFGYPTGLGCLLVRSSLARRWLSETRGSSAAPHIPLNTHSCHVRRRY
FGGGTVLAAVPETDYRLLRPEPARRLADGTEDFLGIISLREGFRFLDEVL
GGIERVRAHTWALTRFCYEQLSSLRHANGQHVCVMYSLPPASPARQGPVV
TFNVRRADGSIAGYSEVEKIATLHGIQLRTGCFCNPGACQEALGLSVEDV
QAQLNAGHVCWDDNDLIEGRPTGAVRVSFGYMSTWEDVTAFLHVIDKYFV
SKTAKAEAADASTPPFLALSLDKKEPLGSPSTLTLRLGSIFLYPIKSCAA
MSVEAWPVGPTGLLFDREWALVDGHGQALRLNKVAQMRFIRPHVDLERQE
LVVAAPGMPDLVLSVRLVPTPDHVRDVSVCGEACQGLGYQDAAGIDAWFT
RFLKRSCSLVRACPYSQKRRSRAVVETHRTDPVATTTGDRAERKEINFTN
EAQFLLISSASVAHLNDLIAQQVDLDYALCYEGVRSDRCYVTLENFRPNL
VIDGGVAHQEDLWKSVDVLPGDRDEGGGQRREVGFREMGVRLKVTGPCAR
CSMVNIDHRCDLSASKKGLDPAMTSDVEKVLPAQVAPVLKMLASYRREKA
NIYFGQFLAFDDLVGRGFQGWLRTGAVVQAQRRSGEGAT

mRNA from alignment at CM002455.1:509175..512803+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna195 ID=rna195|Name=rna195|organism=Nannochloropsis gaditana|type=mRNA|length=3629bp|location=Sequence derived from alignment at CM002455.1:509175..512803+ (Nannochloropsis gaditana)
GTTTCCTTTCCTCAAATTGTATCATCGTTCTGTACATGCATCACAGGCAA
CATCACCCCACACATGCGTCGCTTATAAATCGCAGCACATGGGATGACAA
AAAACAGGAAATGGCTGCCATCCCAGATCCTTCAGTGACCTCTATTCATC
CGAGTGCAGCTCGTTTGAGCAAAGCAGCGTTCCTGGACGTGTACGCTGCA
TACGGATATCGAGAGATCACCCAGGACAATGGCGGCAGTGCCGCCCCATG
CGCCTTCAACATCGAAAAGCAGGCGGAACCGGGGAAGTTTCAGGAGTCTG
CGAGGACGACACTTTGCAGGGACGTTGAACCAAATCCTGGCTCCAGCTTA
TGTAGTAAGCCCACACACGGAAAGCTGATTGTGGGCGCGCTTGAGCACGC
CCGGCAGGACTCCGCAACCCCTACTCCTTGTTCAGATGCGGAGCTCGTAC
CCGTCGACACGTTACGACGGCAAGAATTTCCTGCCCTTTATCATCCTCGT
GAAAATCCTCAGGGCGCTATTTATCTGGATCATGCTGGAGCCACATTGTA
CGCTCAATCGCAGATAGCCCGTTGTCATTCCCACTTGCAAGAAAGCATAT
TTGGTAACCCACATAGCAAGGGGCCCGTGGCAAGTGCCACTGCAGATtta
gtggaggaggcgcgcaGCTCTGTGCTTGCCCATTTTCACGCCCCTCCTGA
GGACTGGACCGTGGTCTTCACATCAGGCGCCACAGCAGCACTCAAGATGG
CCGCCGAGCTCTTCCCCTGGCGCGGACACGGGACAAGTCGGTTGATCTAC
GCGCACAACGCCCACACCAGTGTCTTGGGTATGCGGGAAATAGCGCTGGA
GGCTGGAGCGGGTTTTGCCTGTTTGCCACCCTCTGTCCAGTACGGAGAGA
AGGCCGATGTGGCCCTGGCGGCTGCTCTGCACGAAGCAATGCACCAGAct
ggctcctcttccccattcccccGTCACGAGAATGGCGTCAGCACAGAAGA
CGGACCCACCGAGACGTTTCCCGAGACAGAGCATTTGCTGGTGTTCCCTG
CCGAGTGCAACTTCTCCGGGCGGACGCTGGACTGGGCACGTTTGcggcag
gccctggcgcgGCTTCGGACCACCGACGCAGAGCAGCGCGTGAGCGTGCT
ACTGGACGCCGCAAAGTATGTGGGTACAAGCCCTCTGGACCTGGGCTCGT
TccaagaaggggaggtggacatgCTTTCTCTGAGCTTTTATAAATTATTC
GGGTACCCCACCGGGCTGGGCTGCCTCTTGGTGCGGTCGtccctcgcccg
ccgctGGCTCTCGGAGACCCGGGGGAGTTCCGCTGCCCCGCACATTCCTC
TCAACACCCACTCTTGCCATGTGCGCCGCCGGTATTTTGGTGGTGGGACC
GTGTTGGCTGCCGTACCCGAAACGGATTATCGACTCTTGCGGCCTGAGCC
AGCCAGGCGCTTGGCGGACGGCACGGAGGATTTCTTGGGCATTATTTCCC
TGAGAGAAGGGTTTCGTTTTCTCGACGAAGTCCTCGGGGGAATAGAACGC
GTCAGGGCACACACGTGGGCGCTGACGCGGTTCTGCTACGAGCAGCTCTC
AAGCCTTCGACATGCCAACGGGCAGCACGTGTGCGTCATGTACAGCTTGC
CTCCCGCCAGTCCTGCGCGGCAAGGACCAGTAGTCACGTTCAATGTGCGA
AGGGCAGACGGATCGATTGCCGGGTActcggaggtggagaaaatCGCGAC
CTTGCATGGCATACAGCTTCGCACGGGCTGCTTTTGCAATCCGGGGGCTT
GTCAGGAGGCTCTCGGGCTGtccgtggaggacgtgcaagCGCAGCTGAAC
GCTGGGCATGTGTGTTGGGACGACAACGACTTGATAGAGGGAAGACCCAC
GGGGGCGGTGCGCGTCTCTTTTGGCTACATGTCGACCTGGGAAGACGTGA
CTGCATTTTTGCATGTAATCGACAAGTATTTTGTGAGCAAaacggccaag
gcggaggcagcggacGCGTCGAcaccccctttccttgcacTATCGTTGGA
TAAAAAGGAACCCCTTGGGTCTCCCTCGACCTTAACACTGCGCCTTGGCA
GTATCTTTTTGTACCCCATCAAATCGTGCGCGGCAATGTCTGTTGAAGCA
TGGCCAGTCGGTCCCACGGGATTGCTTTTCGACCGAGAATGGGCCCTGGT
GGACGGGCACGGCCAGGCACTGCGTCTGAACAAGGTAGCCCAGATGCGGT
TCATAAGACCCCACGTTGATCTCGAGAGACAAGAGCTAGTGGTAGCGGCA
CCAGGGATGCCGGATCTTGTTCTCAGTGTCCGCCTTGTGCCCACTCCTGA
CCATGTCCGGGATGTGAGTGTATGTGGGGAGGCATGCCAAGGATTGGGCT
ATCAAGACGCTGCGGGCATAGACGCTTGGTTCACGAGGTTTCTCAAGCGA
AGTTGTAGCTTGGTGCGAGCGTGTCCGTACTCCCAGAAGCGCCGGTCCCG
AGCGGTTGTGGAGACTCACAGAACAGATCCTGTCGCGACGACGACAGGAG
ACAGGGCAGAGCGGAAGGAGATCAATTTCACCAACGAGGCCCAGTTTCTG
CTCATCTCCTCAGCATCGGTGGCCCATCTAAATGATCTCATTGCTCAGCA
AGTCGATTTGGACTACGCTCTCTGTTATGAGGGTGTGCGAAGCGACCGCT
GTTATGTGACATTAGAAAACTTCAGGCCCAATTTGGTGATTGACGGCGGT
GTGGCTCACCAAGAGGACTTATGGAAAAGCGTTGATGTCCTCCCCGGAGA
TAGAGATGAGGGTGGAGGCcaaagaagggaggtcgGTTTTAGAGAGATGG
GCGTGAGGCTTAAAGTAACGGGCCCTTGCGCGAGGTGTTCCATGGTAAAC
ATTGATCATCGTTGCGATCTGTCCGCGTCAAAGAAGGGCTTGGACCCGGC
GATGACGTCAGACGTCGAAAAAGTACTTCCGGCACAGGTAGCCCCCGTAC
TTAAAATGCTGGCTTCCTATCGGCGAGAAAAGGCGAACATTTACTTCGGG
CAGTTTTTAGCCTTTGATGACCTGGTTGGGAGAGGCTTTCAAGGATGGCT
ACGGACAGGAGCTGTTGTACAGGCCCAGCGGCGGTCCGGTGAGGGAGCAA
CATAAATGCGAAGAAATGTATCATTCAAAATAAGATGGCAAATGCATGCG
TAAATGTTCCTGGTGAGAATCACGTTTAGCTCTTAATTTGTGTACATGCG
AGAAACGAGGGGAGAAAGTCAGTCACATCGACAACAAGCTCTCATGCTAA
GTCTAAATTAGTGTATGCAACCGGCCACTCTCGGACGAAATTCGCTCCTG
ACGCGTAGAAATTTTTGCCTGGGGACTGCAAGGCATATTTGAACTTTTCA
AGATAATAGAACCCTGGATTCCTTCCAAGATAACCCCTCATACGTGTGAT
GAAGGCGGTAAACGTGGAAAAGTAGGTGCCCACGAACGTACGCGCCCCTG
AGGCGATTATTTGCTCTACCATACCCGTAAGGTTGGGATCCATATCTTCC
AATCCAGCCGCCTTGTAAAAGTCTTCGTAAAACCGGAGACGGTACAGATC
ACGTACAGGGTCGAAAAGCGTTGAGTTCT

Coding sequence (CDS) from alignment at CM002455.1:509175..512803+

>rna195 ID=rna195|Name=rna195|organism=Nannochloropsis gaditana|type=CDS|length=3120bp|location=Sequence derived from alignment at CM002455.1:509175..512803+ (Nannochloropsis gaditana)
ATGCATCACAGGCAACATCACCCCACACATGCGTCGCTTATAAATCGCAG
CACATGGGATGACAAAAAACAGGAAATGGCTGCCATCCCAGATCCTTCAG
TGACCTCTATTCATCCGAGTGCAGCTCGTTTGAGCAAAGCAGCGTTCCTG
GACGTGTACGCTGCATACGGATATCGAGAGATCACCCAGGACAATGGCGG
CAGTGCCGCCCCATGCGCCTTCAACATCGAAAAGCAGGCGGAACCGGGGA
AGTTTCAGGAGTCTGCGAGGACGACACTTTGCAGGGACGTTGAACCAAAT
CCTGGCTCCAGCTTATGTAGTAAGCCCACACACGGAAAGCTGATTGTGGG
CGCGCTTGAGCACGCCCGGCAGGACTCCGCAACCCCTACTCCTTGTTCAG
ATGCGGAGCTCGTACCCGTCGACACGTTACGACGGCAAGAATTTCCTGCC
CTTTATCATCCTCGTGAAAATCCTCAGGGCGCTATTTATCTGGATCATGC
TGGAGCCACATTGTACGCTCAATCGCAGATAGCCCGTTGTCATTCCCACT
TGCAAGAAAGCATATTTGGTAACCCACATAGCAAGGGGCCCGTGGCAAGT
GCCACTGCAGATttagtggaggaggcgcgcaGCTCTGTGCTTGCCCATTT
TCACGCCCCTCCTGAGGACTGGACCGTGGTCTTCACATCAGGCGCCACAG
CAGCACTCAAGATGGCCGCCGAGCTCTTCCCCTGGCGCGGACACGGGACA
AGTCGGTTGATCTACGCGCACAACGCCCACACCAGTGTCTTGGGTATGCG
GGAAATAGCGCTGGAGGCTGGAGCGGGTTTTGCCTGTTTGCCACCCTCTG
TCCAGTACGGAGAGAAGGCCGATGTGGCCCTGGCGGCTGCTCTGCACGAA
GCAATGCACCAGActggctcctcttccccattcccccGTCACGAGAATGG
CGTCAGCACAGAAGACGGACCCACCGAGACGTTTCCCGAGACAGAGCATT
TGCTGGTGTTCCCTGCCGAGTGCAACTTCTCCGGGCGGACGCTGGACTGG
GCACGTTTGcggcaggccctggcgcgGCTTCGGACCACCGACGCAGAGCA
GCGCGTGAGCGTGCTACTGGACGCCGCAAAGTATGTGGGTACAAGCCCTC
TGGACCTGGGCTCGTTccaagaaggggaggtggacatgCTTTCTCTGAGC
TTTTATAAATTATTCGGGTACCCCACCGGGCTGGGCTGCCTCTTGGTGCG
GTCGtccctcgcccgccgctGGCTCTCGGAGACCCGGGGGAGTTCCGCTG
CCCCGCACATTCCTCTCAACACCCACTCTTGCCATGTGCGCCGCCGGTAT
TTTGGTGGTGGGACCGTGTTGGCTGCCGTACCCGAAACGGATTATCGACT
CTTGCGGCCTGAGCCAGCCAGGCGCTTGGCGGACGGCACGGAGGATTTCT
TGGGCATTATTTCCCTGAGAGAAGGGTTTCGTTTTCTCGACGAAGTCCTC
GGGGGAATAGAACGCGTCAGGGCACACACGTGGGCGCTGACGCGGTTCTG
CTACGAGCAGCTCTCAAGCCTTCGACATGCCAACGGGCAGCACGTGTGCG
TCATGTACAGCTTGCCTCCCGCCAGTCCTGCGCGGCAAGGACCAGTAGTC
ACGTTCAATGTGCGAAGGGCAGACGGATCGATTGCCGGGTActcggaggt
ggagaaaatCGCGACCTTGCATGGCATACAGCTTCGCACGGGCTGCTTTT
GCAATCCGGGGGCTTGTCAGGAGGCTCTCGGGCTGtccgtggaggacgtg
caagCGCAGCTGAACGCTGGGCATGTGTGTTGGGACGACAACGACTTGAT
AGAGGGAAGACCCACGGGGGCGGTGCGCGTCTCTTTTGGCTACATGTCGA
CCTGGGAAGACGTGACTGCATTTTTGCATGTAATCGACAAGTATTTTGTG
AGCAAaacggccaaggcggaggcagcggacGCGTCGAcaccccctttcct
tgcacTATCGTTGGATAAAAAGGAACCCCTTGGGTCTCCCTCGACCTTAA
CACTGCGCCTTGGCAGTATCTTTTTGTACCCCATCAAATCGTGCGCGGCA
ATGTCTGTTGAAGCATGGCCAGTCGGTCCCACGGGATTGCTTTTCGACCG
AGAATGGGCCCTGGTGGACGGGCACGGCCAGGCACTGCGTCTGAACAAGG
TAGCCCAGATGCGGTTCATAAGACCCCACGTTGATCTCGAGAGACAAGAG
CTAGTGGTAGCGGCACCAGGGATGCCGGATCTTGTTCTCAGTGTCCGCCT
TGTGCCCACTCCTGACCATGTCCGGGATGTGAGTGTATGTGGGGAGGCAT
GCCAAGGATTGGGCTATCAAGACGCTGCGGGCATAGACGCTTGGTTCACG
AGGTTTCTCAAGCGAAGTTGTAGCTTGGTGCGAGCGTGTCCGTACTCCCA
GAAGCGCCGGTCCCGAGCGGTTGTGGAGACTCACAGAACAGATCCTGTCG
CGACGACGACAGGAGACAGGGCAGAGCGGAAGGAGATCAATTTCACCAAC
GAGGCCCAGTTTCTGCTCATCTCCTCAGCATCGGTGGCCCATCTAAATGA
TCTCATTGCTCAGCAAGTCGATTTGGACTACGCTCTCTGTTATGAGGGTG
TGCGAAGCGACCGCTGTTATGTGACATTAGAAAACTTCAGGCCCAATTTG
GTGATTGACGGCGGTGTGGCTCACCAAGAGGACTTATGGAAAAGCGTTGA
TGTCCTCCCCGGAGATAGAGATGAGGGTGGAGGCcaaagaagggaggtcg
GTTTTAGAGAGATGGGCGTGAGGCTTAAAGTAACGGGCCCTTGCGCGAGG
TGTTCCATGGTAAACATTGATCATCGTTGCGATCTGTCCGCGTCAAAGAA
GGGCTTGGACCCGGCGATGACGTCAGACGTCGAAAAAGTACTTCCGGCAC
AGGTAGCCCCCGTACTTAAAATGCTGGCTTCCTATCGGCGAGAAAAGGCG
AACATTTACTTCGGGCAGTTTTTAGCCTTTGATGACCTGGTTGGGAGAGG
CTTTCAAGGATGGCTACGGACAGGAGCTGTTGTACAGGCCCAGCGGCGGT
CCGGTGAGGGAGCAACATAA

Synonyms

Publications