rna1941, rna1941 (mRNA) Nannochloropsis gaditana

Overview
Namerna1941
Unique Namerna1941
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1761
Alignment locationCM002458.1:523705..524749 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g78.4907.mrna
Orig protein idgnl|cribi|Naga_100002g78.4907
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:523705..524749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g78gene1854Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1941rna1941-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28788.1cds1936Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1941 ID=rna1941|Name=rna1941|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp
ATGTTGGGCGGATGGGCTAAACCTTGCTCTGTGTATGTTATAATTTGCCA
CACCAATGCACGATCAGCTCTTCTTGCCGCTACACGTCCATGCTTGGAAT
CTCCTATTGCATTTATGCGTGAGGCGCGAGAGGAGAGGGTATTACTGTCA
TTGACACTCCCTCGGGTTTTGGCCGCTAGGCAGGCAGGAGGCGCGAGGCG
GGCTTCCGCGAAGTTCAAGCGCGGCCTGGGGACATACGGGCGGCATTCTT
TTTCCTTTTCTCACCCGTCAAAAGGTTTATTCCGCCCGAACATCTTCACA
CGACTCAGACAGTGTGACAAGTATCATACTATCCTCTTAATGGAGAATGG
TGATGCCTTCATAGATTTGATCTCTAAAAAGAGGGTACAATTAGTTATTA
AGGGAGGTGATCCCTGCATCGAGGTCGGTGGAGGATTGCAGGTAAGCTTA
TATGACGTAATTGGGTCTGCAGTGATCGAGACTCAACAGTCGGAAGGCAC
AAAGCTGCTGGTCTATGCATACCCTCGGAGTGTTGGAAGACAGTATCCTT
GCGGTAAAGTTTACCCAATTGCAAAGCGTCGACCTCAGTATCTCCACTTC
ATGACGCCAAAGGCCCAACTGGCCAAGCGATGGGACCAGAGGATTAAAGA
ATTGGCTTGGAGAGAGTCATGGCTAAGCAGGCAGGACGGCCTCGATGGGA
CTCACAAGTCAAAGCGATGGCGACAAAGACGACTGCTTGTCGTGCTTAAT
CCTGCTGCAGGACGAGGACAATCGCAGGCCGTGTACACATCCGTGGTGGC
ACCCATGCTGGAGCAGGCGGGCGTGGCGCACGAGCTGGTGGTGACGCGCA
AGGCGCAAGAGGCAAAGAGCTTGATGCACAATTTGAACACTGAGGCGTGG
GACTGTGTAGTAGCTATTGGTGGTGATGGGCTTCTGAGTGAAATAGTGCA
GGGCTTGTATTCGCAAGACCCCGTTTCCTGTCACCCTCTTACGAGACTTC
CTCTGGCCATTGTCCCCAGTGGCACTGGAAATGGAATGGCAGCATCTTTC
CTGTATCAACAAGCGGAAGTCCCTTGTCCAATAAATGCCATGTTCTTGAT
TCTCAAAGCCAAGTCAACCGTACCCGCTGACCTGTCCCTGGTCGAGGCAA
GCGACGGCCAACGTATGAGTTTCCTAGCCCTCTCCTTCGGACTCGTCGCT
GACGTGGACCTGGAGTCGGAAGTAATCCGTTGGGCTGGCTCATTCCGGAT
GGATCTTTTTGCTTTGTACGCAATCCTCCGACTGCGCAGCTACCGAGCTC
GTCTCAGCTACCTTCCCAGCAAAGAGGGGCCTCCACCGCGGGCCGCCGCC
CTTCCACCGTTGAGGGCCCGGCTACCAGATGCATCAGGCTGGGTCCACAT
GGAGCACGACTTTTTGATGGTTTTGATCTCGCACGTGAGTCACATCGCCG
AAAGTGCACATTCCAACCCAGGGAAGAGAATGGGGGACGGCACTCTTCAG
ATCCTGGTGCTACGTCGACAGCCCTCGCTTTCGCGGCTGCGCCTGATTTC
TCTCTTTCTTGCCTTGGAGCGAGGTTATCATGTCACGGCAGACGAGGTCG
AAATCTACAATGCTGTGGCGTACAGGCTGGAGAGTCTCACGGAACGAGGA
GTATACACACTTGACGGGGAAGCCGTCCCTTGTGGAAGCATCCAAGGCCG
GATTCTTCCTCAAGCGATGCGGATTCTTGGGAGCGCCGTGTTAGAAAGGC
AAGAAAAATGA
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protein sequence of rna1941

>rna1941-protein ID=rna1941-protein|Name=rna1941|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MLRMPLRGMVFHSNGRRGAVQLEIVSLFPLASALFCCMEKARSAVYSAIQ
PLARAEDGKQSAEEHVSTSSETAKERTARDPKVTALGTWSCAYCSLTNEE
PHVSFLQQGGVVSCSVCLMVRGEEAWLCPFCAYMNANLKAKSCKICGSMA
FGGKMSNSCGGSRSEVIARDYKRRKRSHTKSKSSATSAPGRCRSGSEPHG
ESVPMLPARDSEALALSKPLRKNLLAGNEDLIQKGQSAVFAHQLKTMHVL
VRVLLAFPVFCDSVAEKHDGQR
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mRNA from alignment at CM002458.1:523705..524749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1941 ID=rna1941|Name=rna1941|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp|location=Sequence derived from alignment at CM002458.1:523705..524749- (Nannochloropsis gaditana)
ATGCTGAGAATGCCACTGCGTGGAATGGTATTTCATTCTAACGGAAGGCG
GGGTGCTGTCCAATTAGAAATCGTATCTCTTTTTCCTCTTGCTTCTGCAT
TATTTTGTTGGTACGAAAGATGACGTAATGATAGCTACTTGATTAACAAG
AAAATGACGAGAAGAAGGGTTTTCTCTTTGCTTTGTATTGTGACTAGGTT
GAAATGCACCGTGCTATCGTATTTCCGAGACTCTCGCTGCTTCAACCCTC
ACATGGTGCTTCGATGCGGCAGCACAACTGCATCACAGACTTTCACTGAG
TTCTCGATTCACAATTTTCATTCTTTGCCTTATCAGTATGGAAAAGGCTC
GCAGCGCAGTATACTCTGCAATTCAGCCCCTTGCACGCGCAGAGGACGGC
AAACAGTCGGCCGAGGAGCATGTAAGTACTTCATCTGAGACAGCAAAGGA
GCGGACGGCGCGGGATCCCAAGGTCACAGCCCTTGGGACGTGGTCATGCG
CATATTGCAGCTTGACTAACGAGGAGCCACATGTTTCCTTCCTGCAACAA
GGAGGAGTCGTTTCCTGTAGCGTGTGCCTCATGGTGCGCGGAGAAGAGGC
GTGGCTTTGTCCCTTTTGCGCGTATATGAACGCCAATCTCAAAGCCAAAT
CCTGCAAAATCTGCGGTTCGATGGCATTTGGGGGCAAAATGAGTAATAGC
TGTGGTGGCAGTCGTAGTGAAGTCATTGCACGCGACTACAAAAGGCGGAA
GCGGTCGCATACCAAGAGTAAATCGTCAGCAACTTCAGCGCCCGGACGCT
GCCGGAGCGGAAGCGAGCCTCACGGAGAAAGCGTTCCAATGTTGCCGGCA
AGAGATTCTGAAGCATTGGCGTTGTCAAAACCGTTGAGAAAAAATCTCCT
GGCAGGAAACGAAGACCTTATTCAAAAGGGACAAAGTGCAGTCTTCGCCC
ACCAGCTGAAAACAATGCATGTACTGGTTCGAGTGCTACTTGCATTTCCA
GTCTTTTGTGACTCGGTTGCCGAGAAACATGACGGCCAAAGATAG
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Coding sequence (CDS) from alignment at CM002458.1:523705..524749-

>rna1941 ID=rna1941|Name=rna1941|organism=Nannochloropsis gaditana|type=CDS|length=1638bp|location=Sequence derived from alignment at CM002458.1:523705..524749- (Nannochloropsis gaditana)
TATGGAAAAGGCTCGCAGCGCAGTATACTCTGCAATTCAGCCCCTTGCAC
GCGCAGAGGACGGCAAACAGTCGGCCGAGGAGCATGTAAGTACTTCATCT
GAGACAGCAAAGGAGCGGACGGCGCGGGATCCCAAGGTCACAGCCCTTGG
GACGTGGTCATGCGCATATTGCAGCTTGACTAACGAGGAGCCACATGTTT
CCTTCCTGCAACAAGGAGGAGTCGTTTCCTGTAGCGTGTGCCTCATGGTG
CGCGGAGAAGAGGCGTGGCTTTGTCCCTTTTGCGCGTATATGAACGCCAA
TCTCAAAGCCAAATCCTGCAAAATCTGCGGTTCGATGGCATTTGGGGGCA
AAATGAGTAATAGCTGTGGTGGCAGTCGTAGTGAAGTCATTGCACGCGAC
TACAAAAGGCGGAAGCGGTCGCATACCAAGAGTAAATCGTCAGCAACTTC
AGCGCCCGGACGCTGCCGGAGCGGAAGCGAGCCTCACGGAGAAAGCGTTC
CAATGTTGCCGGCAAGAGATTCTGAAGCATTGGCGTTGTCAAAACCGTTG
AGAAAAAATCTCCTGGCAGGAAACGAAGACCTTATTCAAAAGGGACAAAG
TGCAGTCTTCGCCCACCAGCTGAAAACAATGCATGTACTGGTTCGAGTGC
TACTTGCATTTCCAGTCTTTTGTGACTCGGTTGCCGAGAAACATGACGGC
CAAAGATAGATGCTGAGAATGCCACTGCGTGGAATGGTATTTCATTCTAA
CGGAAGGCGGGGTGCTGTCCAATTAGAAATCGTATCTCTTTTTCCTCTTG
CTTCTGCATTATTTTGTTGTATGGAAAAGGCTCGCAGCGCAGTATACTCT
GCAATTCAGCCCCTTGCACGCGCAGAGGACGGCAAACAGTCGGCCGAGGA
GCATGTAAGTACTTCATCTGAGACAGCAAAGGAGCGGACGGCGCGGGATC
CCAAGGTCACAGCCCTTGGGACGTGGTCATGCGCATATTGCAGCTTGACT
AACGAGGAGCCACATGTTTCCTTCCTGCAACAAGGAGGAGTCGTTTCCTG
TAGCGTGTGCCTCATGGTGCGCGGAGAAGAGGCGTGGCTTTGTCCCTTTT
GCGCGTATATGAACGCCAATCTCAAAGCCAAATCCTGCAAAATCTGCGGT
TCGATGGCATTTGGGGGCAAAATGAGTAATAGCTGTGGTGGCAGTCGTAG
TGAAGTCATTGCACGCGACTACAAAAGGCGGAAGCGGTCGCATACCAAGA
GTAAATCGTCAGCAACTTCAGCGCCCGGACGCTGCCGGAGCGGAAGCGAG
CCTCACGGAGAAAGCGTTCCAATGTTGCCGGCAAGAGATTCTGAAGCATT
GGCGTTGTCAAAACCGTTGAGAAAAAATCTCCTGGCAGGAAACGAAGACC
TTATTCAAAAGGGACAAAGTGCAGTCTTCGCCCACCAGCTGAAAACAATG
CATGTACTGGTTCGAGTGCTACTTGCATTTCCAGTCTTTTGTGACTCGGT
TGCCGAGAAACATGACGGCCAAAGATAGATGCTGAGAATGCCACTGCGTG
GAATGGTATTTCATTCTAACGGAAGGCGGGGTGCTGTCCAATTAGAAATC
GTATCTCTTTTTCCTCTTGCTTCTGCATTATTTTGTTG
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Synonyms
Publications