rna194, rna194 (mRNA) Nannochloropsis gaditana

Overview
Namerna194
Unique Namerna194
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1343
Alignment locationCM002455.1:507286..509197 -

Link to JBrowse

Properties
Property NameValue
Productqa- syp4 tlg2p syntaxin 16-type
Orig transcript idgnl|cribi|Naga_100013g23.9814.mrna
Orig protein idgnl|cribi|Naga_100013g23.9814
GeneSNR4
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:507286..509197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNR4gene185Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna194rna194-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30526.1cds194Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna194 ID=rna194|Name=rna194|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp
GTGCACTCACACGCTGAAGACCTTTGTCTGCCTCATGTGGCATGCTCAGA
CTTTTGACTAACTTTCTTTTGCACTTGCGTTCCGTGCTACACAGATTCGC
GGTATAGCGACGCTTGGGCCGAAGTAAGGCCGGGACTTGACGGCAAGGGT
CCTCCCCTCATCTTCCGCCCGCTTTTACACATGGCCTCATCCGTCGTGCC
TGTGAGGCCACCTACTGTGGTTCGGCGGGAGTCTGTAACGTGGCCTACCG
ATGATCCACCACCTCAGTTGAAAAGTTACGGGTCCTTCTCTTCAAACTGG
CGAAGTCAGGCGTCTACGCTGCTCCCATCATCACAGTCGACAAACGCGGG
GAATTTTGTCCACAGTCCCCGTACTGAACGCCGCCTACAATGGCGTGCTT
TATTGCTGGCAGTTTCTACCGTACTACTCACAGCATGTTTCCTTGTAGTC
GTAATCTTAGTCACTGGTCGCACTTTGGCCAGTCCGCACGAAACCAGCCC
CGGCAAGGACGGGCCACTGAAGACCTTTCCATCCTTGTCCCCGAAAGACA
GCTTTAAAGCGGAGGACGAACAGCCGTATCTTCTTGCTGTAGATACCGTC
AGCAATGTTAAGGGGGGCGCTACTGATGCTTTTCCTGGCGCGTATTTAGC
AAAAGCTTCCTCGCACGCTAATCCGAGTCCTGGCTACCCATCAAGCGCCC
CAGAGGATCCTAATATCAAAATTCCCGTGACCATGGGATGCCTTGAAGCT
ATGTGTGAAAGTTGGATGGCAGCTTTGGGTCAGCATCACGGGGACGGGGC
AAATCTGACCCTGCTCGATTGTATACAGCGCACAGGTATGTCCGCTGATG
GCACCCGGGCATGCTTTGCTATGTCGCATGTCACGGACTCGGCCGAGCGC
GTGGGATTGTACCAGTGTGCAGTTTGCGAGGGGTGCCTCGCTCCGCAGAG
CAAAGAAGAGAAAGCCGCGCTCTGCCAGACTGGTTCCGGCAAAGGAAAGA
CATCCGCCAAGCGATCGGCGCCCTCGTCGCATGCTTCCACGCCTTCGGCA
AGTGCATGGGACCGCTATGTTCCCAAGGGCTTCGCGCCTTAAGAAGGTCA
ATAAGATCAACAGGAAATTATTCCTGGTGGGAAGCTGACTGTCTTGTCGG
TCGATTTTGATAGCATGAGTTCCACGGGGGAAAGAGAAAACGCTCACAAA
GTCAAATTTACTAGAGAGTTGGCATCCTTACGGATATGCCGCGTGTATAG
ACTGACAACATATGAGTATACCATGTTTAAAGTAAAGGCAATAGCCGACG
TTTCTGACGCTGGAGCCAGTAGAAGTACTTTTTGTTGCTTGCC
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protein sequence of rna194

>rna194-protein ID=rna194-protein|Name=rna194|organism=Nannochloropsis gaditana|type=polypeptide|length=313bp
MATRDLTRKYVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDASQDSNTGWA
AARMQLPPAWVDLVDRVDTLTAQIEAKMKELEALHRKRLLVGFDDSEAAR
ERDIDFITQEITGMLREAESALKQLGGGGADGGGGTEKLVTRNVQKSMAK
RIQALSIEFRASQKHYMAQLKAQKSGAAPLFDFLAAGHDTLETERRAREE
NGMEGGFTPEQLAVLEEQEVTTAERDREIQHIARSIEELSQIFRELAVLV
IDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLCS
IFVMVLILIIKHR
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mRNA from alignment at CM002455.1:507286..509197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna194 ID=rna194|Name=rna194|organism=Nannochloropsis gaditana|type=mRNA|length=1912bp|location=Sequence derived from alignment at CM002455.1:507286..509197- (Nannochloropsis gaditana)
GATACAATTTGAGGAAAGGAAACACTCGTCACAGGTATGGAAACCAATTT
TCCCCTTTAAATTTCGTCCTCGATTACGAAGAGTCAAAAATGACCCGCGT
TGAATTTGCGAACCAAGAATGGGGGGCTGCCTGACTTGCTGCCTCGTGCT
CTCCCTCTCGCTGCCTCGCGCGAAGTCTCGCGTTCGATTATGTCACCATG
TTCCTGGAACCCCTCAATACCCTCTGCCTTTGCTCATGCCCAGCACTAAG
AGAGGGAGCCTTTTGCAATCAAGCTGGCCTGTGGGCCGCGGGCGTGGCGG
AGGAATATCACGAGGAAAAGGCGAGACGCAGCTTAGGAGGGCGTGACGGC
TACCTCCGGTCTTGTTCCACCTTCCTTGGCACCGCTTTCCCTCTCCTTTC
CTCTTCAACAAAGCACGGCCTCCTCCTCCGTTGTCACGACGGAACCACGC
AGCACGTATGGCGACGCGGGATTTGACACGGAAGTACGTCGACTACAGGA
CAACGGCCAAGGTAAGATGGCGGAAAGACTGGGGCCGAAGCGGAGCTCAG
GAAGGTGGGGATAGCAAATTAGACACTGGGTGAGCAAAAATATGGAGCAG
CAAAGCGCATCGGATGGCATGTCATGTGTACAGAAACATAGTGTAGGGAT
GAACAGGGCAGCCCAAACCGCTACGTAAATTCCCTGTTGATCGGACCACT
GAGACGTTATGACCTCTACTGTATATGACGACTCAGCGATTTCACAGACT
TTTCTCTCGAAATATCATAGCTCAAACTACACTTCGTACACATATACAAT
AAGATAATAGGTCGCAATTCTCTCTCCCCCCTCAGCGGCTACACGATGGA
CAGTGGCCTCTTGGAGGACGCTTCGCAAGACAGTAACACAGGGTGGGCGG
CCGCACGCATGCAATTACCGCCAGCATGGGTTGATTTAGTGGACCGTGTG
GATACATTGACGGCCCAAATAGAGGCCAAAATGAAGGAGTTGGAGGCTCT
GCATCGAAAGCGATTGTTGGTGGGGTTCGACGACAGCGAGGCGGCGCGCG
AGCGGGACATCGACTTCATAACGCAGGAGATCACGGGGATGCTCCGGGAG
GCGGAGTCGGCGCTCAAGCAGCTGGGGGGGGGAGGGGCAGATGGAGGAGG
AGGGACGGAAAAGCTTGTGACACGGAATGTACAAAAATCCATGGCAAAAC
GAATTCAGGCGTTGTCGATCGAATTTCGGGCCTCGCAGAAGCATTACATG
GCTCAATTAAAAGCACAGAAGTCGGGCGCCGCTCCACTCTTCGACTTCCT
TGCTGCCGGCCATGATACTTTGGAGACGGAGCGACGCGCGCGGGAAGAAA
ACGGGATGGAGGGTGGGTTCACGCCGGAGCAACTGGCAGTTTTGGAGGAG
CAGGAGGTGACTACGGCGGAGAGGGACCGGGAGATCCAGCACATCGCCCG
GTCCATCGAGGAGCTCTCGCAGATATTCAGGGAGCTGGCCGTGTTGGTCA
TCGACCAGGGGACCGTGCTCGATCGGATCGACTTCAACATGGAGCAGGTG
GTGGAGCACACAAAGGAGGGGGTGCACCAGCTGGTCAGGGCCGAGGAGAA
CCAAAAGTCGGCCAAGGCGACGCGATGTATCGTCTGCTTGCTCTGCTCCA
TTTTTGTCATGGTCCTCATTCTTATCATCAAACATCGGTGACTTCTGCCC
AAAGGCCCCAGACATTTTCCCCCGAAAGGGCACATGTAGCCTATGGTAAA
CTGCTTTCATCTTCCACCTTCCCCAGTTCTTGAATCGAACCTTTAAGATG
AGAACGCCATGACAAATGAGTGTCGAACTGTTTGTCAAGGTCTCCCGGAG
ACCTTCATTTTTTGGCAAGCAACAAAAAGTACTTCTACTGGCTCCAGCGT
CAGAAACGTCGG
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Coding sequence (CDS) from alignment at CM002455.1:507286..509197-

>rna194 ID=rna194|Name=rna194|organism=Nannochloropsis gaditana|type=CDS|length=1884bp|location=Sequence derived from alignment at CM002455.1:507286..509197- (Nannochloropsis gaditana)
ATAATAGGTCGCAATTCTCTCTCCCCCCTCAGCGGCTACACGATGGACAG
TGGCCTCTTGGAGGACGCTTCGCAAGACAGTAACACAGGGTGGGCGGCCG
CACGCATGCAATTACCGCCAGCATGGGTTGATTTAGTGGACCGTGTGGAT
ACATTGACGGCCCAAATAGAGGCCAAAATGAAGGAGTTGGAGGCTCTGCA
TCGAAAGCGATTGTTGGTGGGGTTCGACGACAGCGAGGCGGCGCGCGAGC
GGGACATCGACTTCATAACGCAGGAGATCACGGGGATGCTCCGGGAGGCG
GAGTCGGCGCTCAAGCAGCTGGGGGGGGGAGGGGCAGATGGAGGAGGAGG
GACGGAAAAGCTTGTGACACGGAATGTACAAAAATCCATGGCAAAACGAA
TTCAGGCGTTGTCGATCGAATTTCGGGCCTCGCAGAAGCATTACATGGCT
CAATTAAAAGCACAGAAGTCGGGCGCCGCTCCACTCTTCGACTTCCTTGC
TGCCGGCCATGATACTTTGGAGACGGAGCGACGCGCGCGGGAAGAAAACG
GGATGGAGGGTGGGTTCACGCCGGAGCAACTGGCAGTTTTGGAGGAGCAG
GAGGTGACTACGGCGGAGAGGGACCGGGAGATCCAGCACATCGCCCGGTC
CATCGAGGAGCTCTCGCAGATATTCAGGGAGCTGGCCGTGTTGGTCATCG
ACCAGGGGACCGTGCTCGATCGGATCGACTTCAACATGGAGCAGGTGGTG
GAGCACACAAAGGAGGGGGTGCACCAGCTGGTCAGGGCCGAGGAGAACCA
AAAGTCGGCCAAGGCGACGCGATGTATCGTCTGCTTGCTCTGCTCCATTT
TTGTCATGGTCCTCATTCTTATCATCAAACATCGGTGAATGGCGACGCGG
GATTTGACACGGAAGTACGTCGACTACAGGACAACGGCCAAGATAATAGG
TCGCAATTCTCTCTCCCCCCTCAGCGGCTACACGATGGACAGTGGCCTCT
TGGAGGACGCTTCGCAAGACAGTAACACAGGGTGGGCGGCCGCACGCATG
CAATTACCGCCAGCATGGGTTGATTTAGTGGACCGTGTGGATACATTGAC
GGCCCAAATAGAGGCCAAAATGAAGGAGTTGGAGGCTCTGCATCGAAAGC
GATTGTTGGTGGGGTTCGACGACAGCGAGGCGGCGCGCGAGCGGGACATC
GACTTCATAACGCAGGAGATCACGGGGATGCTCCGGGAGGCGGAGTCGGC
GCTCAAGCAGCTGGGGGGGGGAGGGGCAGATGGAGGAGGAGGGACGGAAA
AGCTTGTGACACGGAATGTACAAAAATCCATGGCAAAACGAATTCAGGCG
TTGTCGATCGAATTTCGGGCCTCGCAGAAGCATTACATGGCTCAATTAAA
AGCACAGAAGTCGGGCGCCGCTCCACTCTTCGACTTCCTTGCTGCCGGCC
ATGATACTTTGGAGACGGAGCGACGCGCGCGGGAAGAAAACGGGATGGAG
GGTGGGTTCACGCCGGAGCAACTGGCAGTTTTGGAGGAGCAGGAGGTGAC
TACGGCGGAGAGGGACCGGGAGATCCAGCACATCGCCCGGTCCATCGAGG
AGCTCTCGCAGATATTCAGGGAGCTGGCCGTGTTGGTCATCGACCAGGGG
ACCGTGCTCGATCGGATCGACTTCAACATGGAGCAGGTGGTGGAGCACAC
AAAGGAGGGGGTGCACCAGCTGGTCAGGGCCGAGGAGAACCAAAAGTCGG
CCAAGGCGACGCGATGTATCGTCTGCTTGCTCTGCTCCATTTTTGTCATG
GTCCTCATTCTTATCATCAAACATCGGTGAATGGCGACGCGGGATTTGAC
ACGGAAGTACGTCGACTACAGGACAACGGCCAAG
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Synonyms
Publications