rna1929, rna1929 (mRNA) Nannochloropsis gaditana

Overview
Namerna1929
Unique Namerna1929
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3171
Alignment locationCM002458.1:487486..488773 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g90.4905.mrna
Orig protein idgnl|cribi|Naga_100002g90.4905
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:487486..488773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g90gene1842Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1929rna1929-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28786.1cds1924Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1929 ID=rna1929|Name=rna1929|organism=Nannochloropsis gaditana|type=mRNA|length=3171bp
ACAATCCATCGTCCGCCCCTTTCACAGCATCATCCAAAAGCCAGGGAGTC
AAATTCAGGATAAAGAGCGGCCTGAAGGGACTCGTGCCTAGTGCTCTGAT
CTTCTCCTGCTCGTGCTTCGACACAGGCAACTGCGGTATTTTCAAAGAAA
AGTACAGCTCTGAACAGCAACGCGTATTCTGAGAGTTGCGGCGTCCTTTC
ATACTTTGTACTTAGCGAGCATCGCAGGGCTCAGTTTATGGCAACGTGGA
AAGAGTGCATCGCGAGTGTCTTGATCTCGCCGATCCATCGCCCAGGTACT
AACTACCCCAGGTACAAGCTCGCTCCCACCTCCTAGCAGAAGTTGCCTTT
TTCCCTTCTTGCGCTCCTCGCGCACAGGGGCCGCAAAACTTCCGGGACGC
ACGGCGCACACATGCTTTATTCAAAGCTCGAAGCTTTACAAAGTTTTGAA
AGCAGCAGTGTTATGCGTCTGTAAGCAAATATGTATTACAAACGTGAGCA
TACGTAATCGAATATGACAGTTGCACTCTATAATGTACACGTCTCGTCAG
TTTCTACATTATACACAACGCGGACATAACTGGCTTGCGAGAGGGCAACA
TTCCTACTTCATGCCTGATGCAGGGATCATAGACCTTTGCTGGGATGAAA
CGCAGGAGAGACCATCACAAGAGGAAGAAGAGCGCTTCTCGCGGGTTCCA
GGACATCATGAGCCGTCGACTGAAACCATTAGTCATGCCATATCATCATC
ATCCAAAGTGACTCGCACATTGCCGAAGGATGCATTGTCGCAATCCAGCG
TGCATGCAAGTGGAGCTGCAAGTACGAGCGCAAATGACGCCAAATCTGTA
GACCTTTTGAAAGCAACTGGGGAGCTTTCAGAAGAGCAAAAAGGCATTCT
TCGTTCTGTAATGGAGGGTCACAACGTATACTACAGTGGCCGTGCCGGAT
CTGGGAAGACTCACCTCCTGCGGGCCATCATAGATCGAGCACCTGCAGGC
AAGACATTCGTTACAGCTTCCACGGGCATTGCGGCCGTGAATGTGGGCGG
AACCACACTCCACTCGTTCGCTGGCATCGGTCTGGGCGACGACCCTCTTG
AGGTTTTGAAGGAGCGCGCGGGGAAAAACCGTACCGCGGCAGCGAACTGG
GCGGCCGTGGAGGTCTTGATTGTGGACGAGGTCAGCATGCTGCACGGCTC
CCTGCTCAGCAAGCTGAACGAGATCGCCAAACACGTCAAGAACCAGCCCC
ACCGGCCATTCGGAGGGGTCCAGCTCATTTTTACAGGCGACTTCTTCCAG
CTTCCCCCCGTCAGCCGGGGCCGCCGGGCGGGAGACCACGACTATGCCTT
CTTGCATCCCGTCTGGAAGGAACTTTTTGGGCCTGAATCCTGCTATGAGC
TCACTCGTGTCTTTCGCCAGGCTGAGAAGCCCCTGGTCGCCCTCTTGAAT
GACGTTCGCTACGGGCGGGCCTCGGCTGAAAGCATCGCATTGCTCCAGGA
GCTGTCGCGAGATTTGAAGCCCCCCCCGGGGATAGAGCCGACCTTGCTCT
TTGCGACGAACAACCGCGTGGACGAGATGAACCAACAGAAGCTTGGGTTG
TTGGCGGGCGCGGAAGATCACGTTTTTCAGGCGACGGACTCGGGCGTGGA
GCCCTTTCTGGGCCAGCTGCGAAAGAATTGTCTGGCGGAGTCCAGACTCA
GGCTGCGAACAGGCGCGCAGGTGATGCTCTTGAAGAACGTGAACGCAAAC
CTCGGGCTTGTAAACGGCGCGAAAGGACGGGTCACGTCCTTCACCAACGA
CGAGGAGCATTTGCCCATCGTGGAGTTCGCCTCCGGGATGCAGTACAGCA
TCGCGCAAGAGGAATGGGCGATCGAAGTGAGCGAGCGGGGACGCACCGTC
AAGAAAGCGGTGCGGTTGCAAGTCCCGCTCAAACTGGGGTGGGCGATCAC
CATCCACAAGAGCCAGGGCATGGGCCTGGAGTGGCTGGAGTGCAAACTGG
ACGACGTGTTTGAGGACGGACAGGCCTACGTGGCACTCTCCCGGGCAGTC
AAACTTGAGGGGCTCCGGGTCCTGACATTCCGACAGGACCGTTTCCGCGT
CTCTCCCCACGTTGTCTCTTTCTACGACAGTCAGATAAAGGGAAAGACGC
GCCGAGAACCCGGTGAGGAGTCATCCTGGCTCTCAAGCCTTGCCCCCAAC
TGGCTGCCGGAACATCGTAAGTACAGAGAAAACCCCGGCGGGGTTGTTGG
TTCAATGACAGGAAGAAGCTCTGGTCGTCATGAGGAGCATGGGGCATGGA
CTGGGAAGCGGGAGGGGCCTTATTCTTCCTGGAATTCGGGAAGTGTCACA
AATTCACTCAAACGCAACCGTGTCGGGGGGGGAGGAGAGTGGATCCCGCG
AGGAGGAGGAAGGAACGTTTTGCCTCCCCCTTCGCCGCCACCTCCAGCCA
CGTCACCGCCCGCACCCTCTCCTCTGGGACCAGCTAACGGGTCTGCGCTC
CCAGGACGGAAACAAACGGTGCCGCCCTACCGGCCGTTTTCCGCTCCTCT
CGCGCCTTCGGCAGGACCGTATCGTTCGCAGAAGTATCAACACCAGCAAC
ACGAGCAACGGCGACAGCAGCTGCTGCCTGGAGGGCAGCATCTTCCGCGC
ACCACGTTCAGGACTGCTTCTGATGGCGCACGGCTGGTCTCATCGGTTAA
CAACGACACGGACGCCGAAAACGGTAGCGACAGACAAGACGCATATGGCT
CCAAGGGCAACAGTAGCAAGACGAACATGGCGACTAGCAAGACTGGAGCT
AGCTACGTCAACAATAGGGGGGGCGCCTGGGGCAGCTACGAGCAGCGGAG
GAATGTCCCGGCTTACACGTCACGGCCGAGTGGGCAAGGCAGTGTCAGGA
ACTACTTCTCCACGAAGAAATGAGAAATGGGTCGGAAGCATGAATACGAG
CACGGGCTGATGATGGGCATTCTCGTTAGACAATCTATCGTCTACCCCTT
TCACAGCATCATCCAAAAGCCAACCATGGAGTCAAATTCAGGATAATTAG
CGGCCTGAAGGGACTCGTGTCTAGTGCTCTGATCTTCTCCTGCTCGTGCT
TCCGACACAGGCAACTGCGGTATCTTCAAAGAAAAGTACAAAACGCGTAT
CATGAGTGCAGCGTCCTCTCA
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protein sequence of rna1929

>rna1929-protein ID=rna1929-protein|Name=rna1929|organism=Nannochloropsis gaditana|type=polypeptide|length=97bp
MDCLTRKPMCLFPTSVQNCKRPKSAVRKLLPSGGQMPIETGNRHRLGLKM
PYLRPKTPSTIKSVVWGRASLEDSLKAEGTSEIDGAGVYTEALSFSN
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mRNA from alignment at CM002458.1:487486..488773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1929 ID=rna1929|Name=rna1929|organism=Nannochloropsis gaditana|type=mRNA|length=1288bp|location=Sequence derived from alignment at CM002458.1:487486..488773+ (Nannochloropsis gaditana)
GGCGAGATCAAGACACTCGCGATGCACTCTTTCCACGTTGCCATAAACTG
AGCCCTGCGATGCTCGCTAAGTACAAAGTATGAAAGGACGCCGCAACTCT
CAGAATACGCGTTGCTGTTCAGAGCTGTACTTTTCTTTGAAAATACCGCA
GTTGCCTGTGTCGAAGCACGAGCAGGAGAAGATCAGAGCACTAGGCACGA
GTCCCTTCAGGCCGCTCTTTATCCTGAATTTGACTCCCTGGCTTTTGGAT
GATGCTGTGAAAGGGGCGGACGATGGATTGTCTAACGAGAAAGCCCATGT
GCCTGTTCCCAACGTCCGTCCAAAACTGCAAACGGCCTAAGTCAGCAGTG
CGTAAATTGCTCCCGTCAGGAGGGCAGATGCCGATTGAGACGGGCAACCG
CCACCGCCTGGGTTTGAAGATGCCATATTTGCGCCCGAAGACGCCTTCAA
CAATTAAGAGTGTCGTCTGGGGTCGCGCCTCGTTGGAAGACTCATTGAAA
GCCGAAGGCACGTCGGAAATAGACGGTGCAGGCGTATACACCGAAGCTCT
CAGCTTCTCTAATTGATCTTTGAAGACCAGAGCATTTGGCACTCTACATG
CTTTTGAATTTGCATAGGAAGGCAAAAATCTCAGGAGAGCGGATGGTTGC
CCAAGAAGGAGCGTTCAAGACGCTGCTCGCCTCAGGACTTGTGTAGTTTG
CGACAGGCGCTGGCGCCGGGTCATTTCCTTTTAATTTCCGAAGTCTGGAC
ATTCAATGAGTGTATTGTGTGGTCGTTGGCTTTGAAATAGAGTAGGAGAA
AGGCGAATTTTGTCATCTGAGACTCTTGAAAGTGCGTTTTATCAGTAGTA
GGAAACTGATTATCATGTATTGATAGCGGAGAGCATCTATCATACGCATT
AGGAAGAGCACTATACAGGTGGCCTCAGAGGACGTGTGAAAGCAGCTTTT
AACATcaaaggaggagcgagaaaCGCAAGAGGAAAGTATAAGTTCCGAAA
CGGATGCTTAATCGGATTTGCTCAGTTCATTTTGCAAACGAGAGTCTTTG
TTTCAGAGAGGCTTGACCCAAAGCTTTTTCACCGCCTTGTGTATATAAGC
ACACTAGCACCCTACCTGTACTATTCCATTTGCAATGCTTTGTTTTTAAT
GCTCAATGAGCAAATGAAAAACGTAACGCAAAGTCGGCTGGACACTTTTG
ATAGTGTAGTAGGCAAATGGTGCCAAGATGGCTCCGAATAGTATGTCTTC
GAGATTGTGTAGgtttaaaaaagaaaattatCACATGG
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Coding sequence (CDS) from alignment at CM002458.1:487486..488773+

>rna1929 ID=rna1929|Name=rna1929|organism=Nannochloropsis gaditana|type=CDS|length=294bp|location=Sequence derived from alignment at CM002458.1:487486..488773+ (Nannochloropsis gaditana)
ATGGATTGTCTAACGAGAAAGCCCATGTGCCTGTTCCCAACGTCCGTCCA
AAACTGCAAACGGCCTAAGTCAGCAGTGCGTAAATTGCTCCCGTCAGGAG
GGCAGATGCCGATTGAGACGGGCAACCGCCACCGCCTGGGTTTGAAGATG
CCATATTTGCGCCCGAAGACGCCTTCAACAATTAAGAGTGTCGTCTGGGG
TCGCGCCTCGTTGGAAGACTCATTGAAAGCCGAAGGCACGTCGGAAATAG
ACGGTGCAGGCGTATACACCGAAGCTCTCAGCTTCTCTAATTGA
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Synonyms
Publications