rna1918, rna1918 (mRNA) Nannochloropsis gaditana

Overview
Namerna1918
Unique Namerna1918
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1770
Alignment locationCM002458.1:464132..465982 -

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Properties
Property NameValue
Productcystathionine gamma-lyase
Orig transcript idgnl|cribi|Naga_100002g102.4792.mrna
Orig protein idgnl|cribi|Naga_100002g102.4792
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:464132..465982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g102gene1831Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28673.1cds1913Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1918rna1918-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1918 ID=rna1918|Name=rna1918|organism=Nannochloropsis gaditana|type=mRNA|length=1770bp
ATCTTAGGCGTCAAAATAAGATCCTAGTGCTGATCCGTCGGTATGAGAAT
GAATCTCTGGATTTCTTACTGAACACACTTGCCTCCTGACCATGTAAATT
AGGTTGCTCTGCCTTGGGCTTTTGGACATCTCTTCCCTTGTCAATTTTCC
CAGAATATTCCCATGGCCGAAGATGATGATGATCCTTATTTAGCTGAGCT
ACTAGATATATCTGATGCAGAAGAAGGAAAAGCCTTTGCGCAAAGGGGCT
CAATTGCGACTGCCGCAGGCACGAGTACTGCCGCTCTCCTCGCGGCGAAT
ACCACCAGAAATGCATCAAATTCCCCCTCCCCGTCGACAGGAAAATCAAA
TGTGACATATCAAGCTTCTGACACACACCGGGAAACACTTAAACTTTTGT
CGCAGCTCAGTCCTGCGGGTGCTAAAGCTCCAAGTGCTGTGGACGTGCGG
AAAGCATTTCGTGCCCTGTATCCCCCTTTCCAGACAAACGGAGCCAATGA
GGGTGTCAAGAGCAACGCCAAGTCTAGCACATCCATGGTAGCGACGATCG
AAAAACGTGAATGCCCGTGCGTCGCACAGCTCGATGTGATACAGGAAGAG
TTGGAGGTGCATTTGGATGCGGTGGATTTGTTCGACCTCAGAGACGTCAT
TAAGGAGGAGATAGATGCCTGGCAGGCGGGAAAACGGAAGGCCCTGGCGG
AGATGGCAGGATATGGAAAATCTGAGAAGGCAACGTGTGAAGAAGCCGAA
CAATTCACTGGCGACCTGGACAGGAAGGGAGGTACGTCGAAGGGGTCAGA
GAAGCACGTGGGAGAGGACGTAGAAGAGCCCGAGGGGCCCGTGTCCCAAG
CGTCCCTCCTCGACGGGGGGGCTCAAGCTTCGCAGGCGTCTCAAGATACG
GCGAACGGCGAGCTCAAAAGCGGTGACGTCTTGAAAAAACGAAAGCGCGG
CTCCCTGGCAGGGGGCGGTCGCGCGACCTTGCCCTTGATGGTGCTCAAGT
CGGCACGGGGCGGGGGGGGTGCATCCCGTTCCCTATTAATAGAGCTGGAC
GAGCGCGATAAAGCCCAAGATCTGACCGGGGACAGCGGGGCGGTAGGACG
GGTGCACGTGAAGAAGGACAGGGGGGTGGTGCTCGATCTGAAGGGGCATC
AGTACCTGGCGGAGCTCTGCCGGTGCCCGACCATGCTCCTCGTGAGCTTG
GGGGAGGAGGAGGCCAAGGTAGAGGACGTGGTGGATACCTTGTGCGTCCT
CACGCATCATCACGACGAGCTCGAGGCGATGGGGGGGAAGGTGCTGCGGC
GGGGAGAGGAGGAGGAGGAGTCTGTTGGGGGGGAGGAATCGGACTACGGC
CTCATGGGGAGTGAGGGCGAGGGAGCCAGAGCCGGTAAACGCATGAAGGC
GATGAAAAGGACCGTGAGCAAACGCGGTAGCACCGGAGTCGGAGTAAGGC
AGGCAAAGAGAAAGAGCCAGGGGGCCGCTCGAAAGGGCGGTGCGTCCTCA
GCAGGAGCCCCCAAGAGGACGGGGATGCATGCGAAGAAACAGGGCCCGAA
AAGGGTATCCTTGCGCGCGCTTAAGCGGCCAAAGCCAAGGAAGGGCTCAG
ATGTAGACGAGGAGGAGGAAGAGGAGAGCTTTTCAGACGATGACGACGAT
AGTGATTTCAGCGTGTAACATTGCAAAGTACGCATAAGCCCTGTAAAGCA
CAGCACGTCATGCAACGTTTTATTTGATTCCATGCAAGATGACATTCACA
AGCCGCACAAACACCCCTCC
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protein sequence of rna1918

>rna1918-protein ID=rna1918-protein|Name=rna1918|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MDSPFIRTCPVYPPRQMSHGKKKEAYSDRGFGTIAIHAGQEPDPGTGAVV
PAISLATTFSQVSPGVKHGTDLPNSFGKGFEYSRTGNPTRGAFERAMAAV
EHGQFAVSFASGLAATSAIVHLLETGQHVVIVDDVYGGTQRYFRMVVKPT
YDIDFTFVDFNDPSALDAAFQPGRTRLVWLETPTNPTLKVSDVAATAALA
KKHGALFVADNTFLSPYFQNPLDLGADMVVHSVTKYIGGHSDVVGGVVVT
NLPEVHEKLRFIQNSVGAVPSPFDAYMALRGLKTLHVRMEAAARNALAIA
RHLEQHAGVARVLYPGLPSHPQYALAQKQQHGSGAMITFYVRGALHNARR
FLETLQVFILAESLGAVESLAESPAIMTHASVPAEVRRTLGIDDTLVRLS
VGIESLPDLIEDLDRALEAAGAATA
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mRNA from alignment at CM002458.1:464132..465982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1918 ID=rna1918|Name=rna1918|organism=Nannochloropsis gaditana|type=mRNA|length=1851bp|location=Sequence derived from alignment at CM002458.1:464132..465982- (Nannochloropsis gaditana)
TCAAGCGTTGCGCGTCGCCGTCGGAGCGATTTTTGCATGCAGGCCCGCGG
GGAGGGCAAGAACGAAGCTACGCAAATGTTGTCACAAGGTTTCGGCAAAA
TAAATACTTGGAGAAGATGGGCTACGCATAGTCCCGCAATAGAGATGGGG
CGATAAATGGTTTTACAGTCTGCTATTCTTCACAAGGATATTTTTTGAGC
GCATGCCGCCGGATTTCAGGCCGCGCGTGCGTCGTCTCGCTGCTTCTACA
CTTCCACCTCGCTAGCTGGAGGGACACAAAGTATTTTGAGTGAGACGCAA
CGACGGTGTGATGCCGGTCAACCTCGAACGACCTCTTTTCTGACGCCAAC
TTCTGCTTGAAGAGCTGCTTCTGGAGGTCATGGACTCACCCTTCATTCGG
ACATGCCCCGTGTACCCTCCCCGCCAGATGAGTCACGGAAAGAAGAAGGA
AGCGTATTCAGACCGCGGGTTCGGAACAATAGCTATCCATGCCGGCCAAG
AGCCAGACCCGGGGACAGGAGCTGTAGTACCTGCTATTTCGTTAGCCACG
ACATTTTCGCAAGTTAGCCCAGGCGTGAAGCACGGCACAGATTTGCCCAA
CAGCTTTGGAAAAGGCTTCGAGTATTCCCGCACAGGCAATCCAACAAGAG
GCGCCTTCGAGCGGGCCATGGCTGCGGTGGAGCATGGCCAATTTGCCGTG
TCATTTGCCTCGGGTTTGGCAGCAACTTCCGCCATTGTCCATTTGCTTGA
GACGGGGCAGCATGTGGTCATCGTCGATGACGTGTACGGAGGCACCCAAC
GATACTTTCGTATGGTAGTCAAGCCCACGTACGACATCGATTTCACTTTC
GTGGACTTCAACGACCCCTCAGCGCTTGACGCAGCCTTTCAGCCGGGCAG
GACGAGGCTGGTATGGCTGGAGACTCCGACGAACCCTACCCTGAAGGTGT
CCGATGTGGCGGCCACGGCGGCCCTGGCCAAGAAGCACGGGGCCCTTTTC
GTCGCAGACAACACCTTTCTGTCCCCGTATTTCCAAAACCCCCTCGATCT
GGGGGCCGACATGGTCGTGCACAGCGTCACCAAATATATCGGCGGGCATT
CGGACGTGGTGGGCGGGGTCGTGGTCACCAACCTCCCGGAGGTGCACGAG
AAGCTCCGATTCATCCAGAATTCTGTCGGGGCGGTCCCTTCCCCCTTCGA
TGCGTACATGGCCCTCCGAGGGCTCAAAACCTTGCACGTTCGCATGGAGG
CCGCCGCCCGTAACGCGCTGGCCATCGCCCGGCACTTGGAGCAGCACGCG
GGCGTGGCCAGGGTCCTGTACCCCGGCCTGCCCTCCCATCCCCAGTACGC
GCTCGCCCAGAAGCAGCAGCACGGATCAGGGGCAATGATCACTTTCTATG
TGCGGGGAGCATTACACAACGCGCGCCGTTTTTTGGAGACGCTGCAGGTG
TTCATCCTGGCCGAGAGCCTGGGGGCCGTCGAGTCGCTGGCCGAGTCCCC
GGCCATCATGACCCACGCTTCCGTGCCCGCCGAGGTCAGGCGCACGCTGG
GAATCGACGACACGCTTGTCCGCCTGTCTGTGGGCATCGAGTCCTTGCCG
GATTTGATCGAGGACTTGGACAGGGCCTTGGAGGCTGCGGGGGCGGCGAC
CGCCTAGGGGGGTCGGATGGGACAGAGGCAGTGCCGGGACACAGGAGAGG
GAGGGGTGTTTGTGCGGCTTGTGAATGTCATCTTGCATGGAATCAAATAA
AACGTTGCATGACGTGCTGTGCTTTACAGGGCTTATGCGTACTTTGCAAT
GTTACACGCTGAAATCACTATCGTCGTCATCGTCTGAAAAGCTCTCCTCT
T
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Coding sequence (CDS) from alignment at CM002458.1:464132..465982-

>rna1918 ID=rna1918|Name=rna1918|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002458.1:464132..465982- (Nannochloropsis gaditana)
ATGGACTCACCCTTCATTCGGACATGCCCCGTGTACCCTCCCCGCCAGAT
GAGTCACGGAAAGAAGAAGGAAGCGTATTCAGACCGCGGGTTCGGAACAA
TAGCTATCCATGCCGGCCAAGAGCCAGACCCGGGGACAGGAGCTGTAGTA
CCTGCTATTTCGTTAGCCACGACATTTTCGCAAGTTAGCCCAGGCGTGAA
GCACGGCACAGATTTGCCCAACAGCTTTGGAAAAGGCTTCGAGTATTCCC
GCACAGGCAATCCAACAAGAGGCGCCTTCGAGCGGGCCATGGCTGCGGTG
GAGCATGGCCAATTTGCCGTGTCATTTGCCTCGGGTTTGGCAGCAACTTC
CGCCATTGTCCATTTGCTTGAGACGGGGCAGCATGTGGTCATCGTCGATG
ACGTGTACGGAGGCACCCAACGATACTTTCGTATGGTAGTCAAGCCCACG
TACGACATCGATTTCACTTTCGTGGACTTCAACGACCCCTCAGCGCTTGA
CGCAGCCTTTCAGCCGGGCAGGACGAGGCTGGTATGGCTGGAGACTCCGA
CGAACCCTACCCTGAAGGTGTCCGATGTGGCGGCCACGGCGGCCCTGGCC
AAGAAGCACGGGGCCCTTTTCGTCGCAGACAACACCTTTCTGTCCCCGTA
TTTCCAAAACCCCCTCGATCTGGGGGCCGACATGGTCGTGCACAGCGTCA
CCAAATATATCGGCGGGCATTCGGACGTGGTGGGCGGGGTCGTGGTCACC
AACCTCCCGGAGGTGCACGAGAAGCTCCGATTCATCCAGAATTCTGTCGG
GGCGGTCCCTTCCCCCTTCGATGCGTACATGGCCCTCCGAGGGCTCAAAA
CCTTGCACGTTCGCATGGAGGCCGCCGCCCGTAACGCGCTGGCCATCGCC
CGGCACTTGGAGCAGCACGCGGGCGTGGCCAGGGTCCTGTACCCCGGCCT
GCCCTCCCATCCCCAGTACGCGCTCGCCCAGAAGCAGCAGCACGGATCAG
GGGCAATGATCACTTTCTATGTGCGGGGAGCATTACACAACGCGCGCCGT
TTTTTGGAGACGCTGCAGGTGTTCATCCTGGCCGAGAGCCTGGGGGCCGT
CGAGTCGCTGGCCGAGTCCCCGGCCATCATGACCCACGCTTCCGTGCCCG
CCGAGGTCAGGCGCACGCTGGGAATCGACGACACGCTTGTCCGCCTGTCT
GTGGGCATCGAGTCCTTGCCGGATTTGATCGAGGACTTGGACAGGGCCTT
GGAGGCTGCGGGGGCGGCGACCGCCTAG
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Synonyms
Publications