rna1913, rna1913 (mRNA) Nannochloropsis gaditana

Overview
Namerna1913
Unique Namerna1913
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1746
Alignment locationCM002458.1:456263..457144 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g107.4890.mrna
Orig protein idgnl|cribi|Naga_100002g107.4890
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:456263..457144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g107gene1826Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28771.1cds1908Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1913rna1913-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1913 ID=rna1913|Name=rna1913|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp
CCTGGGAGCGACGCCGTGGTCTCTGTCCATGCTAGTCGTGGCTTGCAGCG
GTGTACAGTGGTTTACATGATACACGAGAAGAATTCAGGCTTTTCCAACG
TCAGGGTGCGACTGTTGAGTGTAAATATAACGCGTGGATGTGGCCAGGGG
CCAAGTCTCATGATTGAACCTCCTCCATCCCCAGGGCATACCAGTTTCGG
AATTATGAACTCTTTCCAGAAACCAAAGGCAAGGTCACATTCTGAAGTGA
AACCTCCCCATCACACCACTAGTCATGAGCCTGATATAAATGGTAGCGGT
GGCGGTAAAAACGGCGCAGCTGGACCCGCTACCCGCGGGCGCCATGCATC
ATCAGCCAAAGGAGGCGCTCAAAGTGGCGGATGCAAACGCGGGCACAGCG
ACTCTTTTAGCTCTAACAAGGCGGGTACAATCAAGCGCCAGGGATTTGAA
GGGGTTACATGCAATGACAAGAAGCCGTCAGCGAAATCACAGAAAAATGA
AACGACAGCCGAAATCGAAAGACGCCCTTTCCCTTTCCGAAGGGGAGCTG
GTACATTCCGCGATCGCTTGTTCCGTGCAACCAATCAGCGCATGTATTTG
ATTCACAACGAAAATTTGAGTACAGAGGGGAACCTACACCGTCGGTTTCA
TGTGTCAGGGACTACAGGTAACGTCTATCATGTAGATATTTGTCGCATCC
CTACATGCGATTGCCCCGATTTTGTGCGCCACACCATCCCCGGTCAAGCC
GGGGTCGTTTGCAAGCACATCCTCCTCGTCTATCTTAAGGTCCTCCGGCT
CGCCTTAAACGACACGCTGCTCCCGCAAAAACGCCTGCTGCAAGACGAGC
TGACTCGCATGTTTGCTCGCTTACCCGGCAAAGGAGGCGAGGAGGATGAG
AAGTCGTGGGGCGATGTCTTGGTCGACGCGAAAGCTCGCGCGGCTTACAC
GGCCTTGGTGGATGAGGCTGCGGCCGGAGACGCGGGGGCGAAGAAGGACA
AAGGACAGCAAACGGGGAATCTATGTCTGGATTTGGCCCGGGAAGACGAA
TGTCCCGTCTGTTTAGAACAGTTCGACACACAGAAGCCGGAGGAGGTGGT
GATCTGCTATGCCTGCCACAAGCCCACACACGCGCTCTGCTTCCGGACCT
GGAATGGAGTGAAGATCTCCGAGGGGCTGCCACGCTCCTGCGTCTGGTGC
CGGGCAAGATGGCTAGACCCTGTCCTAGCGGGAGCGAGTGATGGTGCGAA
AGCGAGGGCCGAGAGCCAGGCGGGCTACGTGAATGTGGGGAAGCTCACAG
GCCAGGGTGGGCGGGAGGAGTATCAATCCATGTACAGTCGAGGGAGAAAT
AGATGGTGGCGAGAGCATGATTTCTGATGTCGCCGGAATGTTTAGTAAGG
CCGCTTTCGAGGCATGTGCGCACGCTGTTTCATAGTGGGTAACGGGAAAG
GCGTCATATCAGACGGGGATGCCGACAACGTTGTCTAAAATGCTCGCGAA
ACGCTCTTTCGTTGGAAATGGTGTACGGACGCGACTGCAATGAAGCTCTG
GGTCAGATTTATTTACGTTCGCACCTCAGCGGAGGTGCTGCGGCGAGCAT
GTTGTGAGCTGAGAAGGAGGGGCGAGGACTGGATAGGCGGCTGGCCTTCG
GAAGACTCGTGTTTGAGGATCAGAGTAACTTGCTGTTGTATGGCATTGAA
GAATACGCCTTAAAATAAAAAGAAATCCAATGATAAGCTGTAAAAG
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protein sequence of rna1913

>rna1913-protein ID=rna1913-protein|Name=rna1913|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MWRPGARKPGRPSAGGKAAGSAPAAEVSPTPTNSAPKGRILSASTLGMKF
MQKRMQKDAEMKQQAEQAMAAKAAKWTLEHETRQAEKGASTKAQDKNTIS
QTLQPEQKQSSDSLQLKRSRTMVFENEETDPRTQVLGRRAFGGFNEVVAR
MFEQNLQLLGLRKGKRRRGDDDADEKEVNEHEMVERYRRHGNLPVKRDSN
KGSEASRGGGGKRGRYAYQQPKQKMRGS
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mRNA from alignment at CM002458.1:456263..457144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1913 ID=rna1913|Name=rna1913|organism=Nannochloropsis gaditana|type=mRNA|length=882bp|location=Sequence derived from alignment at CM002458.1:456263..457144- (Nannochloropsis gaditana)
GAACAATAAGCTGAGCGACTCATTTCACCTTCACGTACTCTGTATATGGT
GTTAAGCTTCACTCGTGAGGCATAGACTGGAGGATGTGGAGGCCCGGGGC
TCGCAAGCCGGGACGGCCCTCTGCAGGCGGGAAGGCGGCTGGGAGCGCTC
CGGCGGCAGAAGTATCTCCCACACCCACCAATTCCGCTCCCAAGGGAAGA
ATATTGAGCGCTTCGACCTTGGGTATGAAATTCATGCAAAAGCGTATGCA
AAAGGATGCCGAAATGAAGCAGCAGGCAGAGCAGGCCATGGCAGCCAAAG
CTGCGAAATGGACACTGGAGCATGAAACACGGCAAGCGGAGAAAGGCGCG
TCTACAAAGGCACAGGACAAAAACACCATTTCGCAAACATTGCAACCAGA
GCAGAAGCAGAGCAGTGATTCGTTACAGTTAAAAAGGTCACGTACGATGG
TTTTTGAAAACGAGGAAACGGATCCGAGAACTCAAGTCCTGGGGCGACGG
GCATTCGGGGGGTTCAATGAAGTGGTGGCCAGAATGTTTGAGCAGAACCT
TCAATTACTGGGGTTGCGCAAAGGAAAGCGGAGACGTGGAGATGACGACG
CAGACGAGAAAGAGGTGAATGAACACGAGATGGTGGAGCGCTACCGGCGG
CACGGCAATCTACCTGTCAAGCGAGACAGTAACAAAGGCTCTGAGGCATC
CAGGGGCGGCGGGGGGAAGAGGGGGCGATACGCTTACCAGCAGCCGAAAC
AGAAAATGCGGGGTAGCTAAAGATGTATGGATTCGCATTGTAGCGTGTTG
AATACAAGGTGGCAAGCGGAGTGTAAATGACTTTGAGTAAATAGCGAAGA
GAAAAGCAATCAATTATGTTCACATGTACCGA
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Coding sequence (CDS) from alignment at CM002458.1:456263..457144-

>rna1913 ID=rna1913|Name=rna1913|organism=Nannochloropsis gaditana|type=CDS|length=687bp|location=Sequence derived from alignment at CM002458.1:456263..457144- (Nannochloropsis gaditana)
ATGTGGAGGCCCGGGGCTCGCAAGCCGGGACGGCCCTCTGCAGGCGGGAA
GGCGGCTGGGAGCGCTCCGGCGGCAGAAGTATCTCCCACACCCACCAATT
CCGCTCCCAAGGGAAGAATATTGAGCGCTTCGACCTTGGGTATGAAATTC
ATGCAAAAGCGTATGCAAAAGGATGCCGAAATGAAGCAGCAGGCAGAGCA
GGCCATGGCAGCCAAAGCTGCGAAATGGACACTGGAGCATGAAACACGGC
AAGCGGAGAAAGGCGCGTCTACAAAGGCACAGGACAAAAACACCATTTCG
CAAACATTGCAACCAGAGCAGAAGCAGAGCAGTGATTCGTTACAGTTAAA
AAGGTCACGTACGATGGTTTTTGAAAACGAGGAAACGGATCCGAGAACTC
AAGTCCTGGGGCGACGGGCATTCGGGGGGTTCAATGAAGTGGTGGCCAGA
ATGTTTGAGCAGAACCTTCAATTACTGGGGTTGCGCAAAGGAAAGCGGAG
ACGTGGAGATGACGACGCAGACGAGAAAGAGGTGAATGAACACGAGATGG
TGGAGCGCTACCGGCGGCACGGCAATCTACCTGTCAAGCGAGACAGTAAC
AAAGGCTCTGAGGCATCCAGGGGCGGCGGGGGGAAGAGGGGGCGATACGC
TTACCAGCAGCCGAAACAGAAAATGCGGGGTAGCTAA
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Synonyms
Publications