rna1908, rna1908 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1908
Unique Name	rna1908
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1676
Alignment location	CM002458.1:447813..451347 +

Link to JBrowse

Properties


Property Name	Value
Product	geranylgeranyl pyrophosphate synthase
Orig transcript id	gnl\|cribi\|Naga_100002g113.4894.mrna
Orig protein id	gnl\|cribi\|Naga_100002g113.4894
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:447813..451347 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g113	gene1822	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1908	rna1908-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28775.1	cds1903	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:447813..451347+
coding sequence from alignment at CM002458.1:447813..451347+

mRNA sequence

>rna1908 ID=rna1908|Name=rna1908|organism=Nannochloropsis gaditana|type=mRNA|length=1676bp
GACGAAGCGCAGCATGTCACGCTCTCTTCTCATCCATTCTGACGCAGCAA
AGCCTTAAGGCACCCAAAGGAGGGCCAATATGACGGCAAAGACATGACCC
CGGGGCAGCAAAAGGCGAGCCCTCCCCAGACCCCCCCGTCATGATGCTGC
CGCGTTCTGCCTGCCTGTCACGGCGAACAAACTCGAGGCGCCATGGTGGC
ATTTCACCTTCCTGCCAACTCGTTCTATGTTATTGCTGGATTTGGGTGCG
CCTCAACTGTTTCTGGCAAATTTACGTAGGCACTTTTTCCGTCTAGGTAC
AGGCTGTTCCACTGTGGCCTCTGGCTTCGCCTCTCTGCTCCATCCCGCCC
GCTCTCAACAGACTTTGAAGTTCTTGCACCCATGTCATTTCAAGATGTAG
CGAGCCACAGTCACTCTTACGAGAACGGGGCCATGAACGGTGGAGTCAGG
TACGGCAACGGAGGAGCTTTGACATCTAAACCTGTGGTGACGTTTGGGGA
GAGCAACGGGAGGAGCATCTATGCGAGCGGGAGCCGAAGCGCGACAAACG
GCAGCACGGATCACACTCCTGGAAGCTCTGTCCCGCCATTGCGCCATGCT
CTCCTCCAATACCAGCAGCAAGTGCAGCTGTTCGAAAAGCTTTCGCGCGT
CCTGGGCGGGCCCCGTGACGACAGCGAGCTGAGAAGCCAGCTGCAGGCGC
AGGGCTCCGTGGTGAAGGAGGTGGGAAGCCGCGTCGAGCAACTGGTACAT
GCACAGTTGCGGTCGGTGGAGGGCGTGCGGAGCAAAGCAGAGAAGGACAA
GGCTCGTTTGGAGGTGCAGAAAATGAGCAAGGACGCTCAGCGGTTGAAAC
TCCGGTTCGAGAACCTGGAGCGGGCCACGGCGGTAAGACTACGGGAGCTC
AAGTTGGCTGGCCGGCGAGCCGAGGATTTGTTGAGAGGGTCGGGCATGGG
AAATGGAGATGAGCCAGGCGCGGGAGGGGGGGGGCAGCTGATGGAGCGGC
AGCACGGGCAGCAGGAAATGCAGCTCTTGCAGGCGGAAGACCTGGACGAG
CGCCTGCTCCAAGAGCGCGAGGAGGAGATTGTGGCCATCAACCAGTCCGT
CGTGAAAGTGAACGAGATTTTCCGCGACCTGGGCGAGCTGGTGTCGCGGC
AGCAGGAGGACATCGACGCCATCGAGCAAAACGTGCAGCACTCCCACGCC
GCCGCCAAGTCGGGCTTGGAGCAGGTGGCGAAAGCAGCCAAATACCAGGC
CGGCTGCAGTCTCTCCTGAGAGGCGGAGCCGGCGGACATGTATATGCACT
TTGTACATTGGTCCTTGAAGGAAGGAAAAGGCAGCCTGGCTGGCGGGATT
CTCGGGCGTGGCTGGGGGACAAAAATCCGGGGCGAGCGTGCACCTCCCCT
CTTGTACATAACGACCTCCTGGATACCCTTTTGATGTACACTCCTACTCA
CCCCCATCCTGCAGGGTAAGCGGGCTCCAGAAGGGAGCACAAAAAGAAGC
AAACTACTTGCGGACCCCGCTTGTTCGTCTGTATTCGGTATTTTGTGCTT
TCCAAGGCCAGCTTGATGACGCGCTCACCGTCGGACGTGTGTCCAGTAGG
CCCATAGAAAGAAACAAATACGTGGGAGACTTCAATAGGTCTTCTTCTTC
TACAGAACACTTACAATCAGCTTCCG

protein sequence of rna1908

>rna1908-protein ID=rna1908-protein|Name=rna1908|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MAAAATTADAHSTSRTSSPSAAASASSLPAFDLNKYLLDKKDAVESALDA
SLQVTSPQVAKITESMRYSLLAGGKRIRPIMCIAACEMAGGTAEDAMAAA
VALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAILAGDALLST
AFEHVAKHTPSHVPAERVVSVIARLAASVGATGLAGGQVMDLECEGKEGV
GLEELTWIHTHKTAALLKVSVAAGAILGGASAEEVEACETYALDIGLAFQ
VADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSREEARRLVGEA
KAALGRFGGRAAPLLAIADYIVERKN

mRNA from alignment at CM002458.1:447813..451347+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1908 ID=rna1908|Name=rna1908|organism=Nannochloropsis gaditana|type=mRNA|length=3535bp|location=Sequence derived from alignment at CM002458.1:447813..451347+ (Nannochloropsis gaditana)
CCAAACGTCACCACAGGTTTAGATGTCAAAGCTCCTCCGTTGCCGTACCT
GACTCCACCGTTCATGGCCCCGTTCTCGTAAGAGTGACTGTGGCTCGCTA
CATCTTGAAATGACATGGGTGCAAGAACTTCAAAGTCTGTTGAGAGCGGG
CGGGATGGAGCAGAGAGGCGAAGCCAGAGGCCACAGTGGAACAGCCTGTA
CCTAGACGGAAAAAGTGCCTACGTAAATTTGCCAGAAACAGTTGAGGCGC
ACCCAAATCCAGCAATAACATAGAACGAGTTGGCAGGAAGGTGAAATGCC
ACCATGGCGCCTCGAGTTTGTTCGCCGTGACAGGCAGGCAGAACGCGGCA
GCATCATGACGGGGGGGTCTGGGGAGGGCTCGCCTTTTGCTGCCCCGGGG
TCATGTCTTTGCCGTCATATTGGCCCTCCTTTGGGTGCCTTAAGGCTTTG
CTGCGTCAGAATGGATGAGAAGAGAGCGTGACATGCTGCGCTTCGTCGCG
GCAGGTGGCGCCGGACAGTCTTGCGTCTTTTACGCGTTTCtgtgctcctt
cccccttcgaGTGGCGGAGATCCTCGGACAAGTCAGCTTGAAGCCCGGTC
CCGCGCCAGCCTGAGGGGGCCCTCCACCCTTTTGGGCAATTTTCACGCAC
GTTTCCGTATTCAAAGTGCTTATGTACGCTCTTGTATGATGTAGGATAAT
AATTGGTGGAGATATCAACTTTTTGAAGACTTACTCCACCactcatcctc
tttccttcacacGTACGGCAGTGAGTTAGGGGATCCATCGTGAAAACTTA
TCCAGACAccgaagaaaaggaaaatagACAGTAATTATGGTAGGATTCAC
TACATCAACATGCTTGGTGCTATCCTTAGCAGCTCTGAGCGGCACGCGTA
CCACGGGTAGGTTGTTGCTTCAAATGTTAGGCATCTAGGCGGACCTCGAC
TCGATCTTCGAGGGACCTGCTCCTCATGCTCTGTGCCTTTGCATCTTGCA
TGCACGGCCCAATCTTTTTTTGTTCTCTCGTTGAGGCATATTTGGATATG
CAAGGCGCTCCGAAGCAATTGATCCAGGGAAAGTGCGGGCAAAACTTGCG
GTGCAACTCCGCTTTTTCACAATCTTCTCGTCGCTCTTCAGTCTTGCTCA
GCCGTGTGTTTCAATGTTCATCAACCCACAGCTTTCCAGCCGGCGGCAAG
ACCACCTGCCTCTTCTTGTCACTCTGGCACCCCGTCGGTCTCCGGCCCAT
GCAGCACCAACACCAGGCGCCACCCCCGCGGCTGGGTtatggcggcggca
gccacCACCGCAGACGCCCACAGCACCAGccgaacctcctctccctctgc
cgccgcctccgccagcagcCTGCCCGCCTTTGATTTGAACAAGTAAGGAG
GAGTCAtggcagggacgaggagggaggtccgGTTTGAGGCCTGTGCGGTG
GCTTGGCTGCCTGTACTACAACACGCTTATCATCGAACTCCAACAAAACT
CCCTCCCCAGGTACCTGCTCGACAAGAAGGACGCAGTGGAAAGCGCGTTG
GATGCCTCGCTCCAAGTGACCTCGCCGCAAGTTGCGAAGATCACCGAGTC
CATGCGCTACTCCCTTCTGGCGGGAGGCAAGCGGATACGGCCGATCATGT
GCATCGCCGCCTGTGAGATGGCTGGCGGGACAGCCGAAGACGCGATGGCA
GCAGCTGTCGCCCTGGAGATGATCCACACGATGAGCCTTATCCACGACGA
CCTGCCCTCCATGGACAACGACTCCCTGCGTCGGGGCAAGCCCACGAACC
ATGTCATCTacggcgaggacgtggctaTTCTGGCGGGAGATGCGCTGCTG
TCCACCGCCTTCGAGCACGTGGCCAAGCACACCCCGTCGCACGTGCCTGC
GGAACGCGTCGTGAGTGTGATCGCGCGCTTGGCCGCCTCGGTGGGGGCGA
CGGGGCTGGCGGGCGGGCAggtgatggatttggagtgcgagggaaaggaa
ggcgtggggCTAGAGGAGCTAACCTGGATCCACACGCACAAGACGGCGGC
CCTGCTGAAGGTGAGCGTGGCAGCGGGGGCGATTCTGGGAGGGGcaagcg
cggaggaggtggaggcgtgCGAGACCTACGCCCTGGACATCGGGCTGGCC
TTCCAGGTGGCGGACGACATCCTGGACGTGACCGCGTCCACGGAGGCGCT
GGGCAAGACGGCGGGGAAGGATCTGAACATGGACAAGACCACCTACCCGA
AGCTcctggggctggaggggagccgggaggaggcgaggcggctggtggga
gaggccaaggcggcccTGGGCCGGTTCGGAGGTCGGGCCGCGCCGCTTTT
GGCGATCGCCGACTACAttgtggagaggaagaactaggaagggagggcgg
gaacggGTGTCGCGTGGGGCGGGGCGGCCGCAGGAGGGACCGTGGGCGAC
TGGGAGTGACGGAAGAAGCTTGCGGAGCGAGGACCGGGTGGCGGCGACGC
ATGGGAGGCGAGAGGCTGCGCGGtgggaacggagggggcCGGCGTCGGGA
TATTGGTGAGAAGGTGACACGTGGGTTGCGCCCTgcgaagagaagggaag
aagcgggaggcagggtatggagggagggcgacgtcGGGGGGCTTGTACAG
ACCAGTGTCCTAAACCTCCTATTGAGACGCGAGGGGCGAAGAGGACATAC
GtacggaagaggaaaagaacgGAAGAGATGCCTGCGGGGACTGGCCGAGT
GGGTGTCGTCGGGGGGCATGTCATGCTCTCATGCCAGAAAGAGGACCCCC
GAACaatgagaaagaaggagaagggtgcTTGTTTGCGGTTCGAACATGAC
TgcgtggcggcgggggatggTAAATGCAGGTGGCGTGTCAGAttgaggaa
atggagggctCGAAATCATGAAAGAAAACGGACGGAGGTGGGGCCACAGA
AGTGGTCCGGGTAACCCCGATGGCGCGTCGTGCGTGTAttcctgcttttc
cctgcttgctcccattccctcctgAGGCTGCCGCAAGGCCGCTGggtcgc
cttctcctcacAGCCTCTCTCGATTACCCAAAGCAGCAAGTGCGAAAGGC
GATAACAACGCACCCCATGCCAACTTATTACGTACAATCACACCCTGCct
ggcctgccctcctcactcGCGCTCCTACTCCCACCATCCCTCCTGTGCCT
ACGGGTTCAGGAGCTTTCgctccgtttcctccgcctctacCTCGTCCAGT
GCGTGACTCAAGTACGGTTTCAAAGGGGTTTGCATTTTTTGCAGATCCGC
AGGGAGGTACTTCTTCTTCAGAGAGATCTCGATCGCTCGTTTGATGCGTC
GCTCCCGGGCCACTTGCTCTTCCGGAGACAAATGGTGGATGGCTTTCGTC
ACTGCCTGATCCTCTAGGAACAGATCTTGATAGCGTAATCCTGTGTGACG
GTAACAGGGAAGGAAATTGACAGTGCTAGATGAGACACGCCGTTGTCAGG
CTAGAGCGCGCCCCGTGGAATGTAGGGCGGTGTTA

Coding sequence (CDS) from alignment at CM002458.1:447813..451347+

>rna1908 ID=rna1908|Name=rna1908|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002458.1:447813..451347+ (Nannochloropsis gaditana)
atggcggcggcagccacCACCGCAGACGCCCACAGCACCAGccgaacctc
ctctccctctgccgccgcctccgccagcagcCTGCCCGCCTTTGATTTGA
ACAAGTACCTGCTCGACAAGAAGGACGCAGTGGAAAGCGCGTTGGATGCC
TCGCTCCAAGTGACCTCGCCGCAAGTTGCGAAGATCACCGAGTCCATGCG
CTACTCCCTTCTGGCGGGAGGCAAGCGGATACGGCCGATCATGTGCATCG
CCGCCTGTGAGATGGCTGGCGGGACAGCCGAAGACGCGATGGCAGCAGCT
GTCGCCCTGGAGATGATCCACACGATGAGCCTTATCCACGACGACCTGCC
CTCCATGGACAACGACTCCCTGCGTCGGGGCAAGCCCACGAACCATGTCA
TCTacggcgaggacgtggctaTTCTGGCGGGAGATGCGCTGCTGTCCACC
GCCTTCGAGCACGTGGCCAAGCACACCCCGTCGCACGTGCCTGCGGAACG
CGTCGTGAGTGTGATCGCGCGCTTGGCCGCCTCGGTGGGGGCGACGGGGC
TGGCGGGCGGGCAggtgatggatttggagtgcgagggaaaggaaggcgtg
gggCTAGAGGAGCTAACCTGGATCCACACGCACAAGACGGCGGCCCTGCT
GAAGGTGAGCGTGGCAGCGGGGGCGATTCTGGGAGGGGcaagcgcggagg
aggtggaggcgtgCGAGACCTACGCCCTGGACATCGGGCTGGCCTTCCAG
GTGGCGGACGACATCCTGGACGTGACCGCGTCCACGGAGGCGCTGGGCAA
GACGGCGGGGAAGGATCTGAACATGGACAAGACCACCTACCCGAAGCTcc
tggggctggaggggagccgggaggaggcgaggcggctggtgggagaggcc
aaggcggcccTGGGCCGGTTCGGAGGTCGGGCCGCGCCGCTTTTGGCGAT
CGCCGACTACAttgtggagaggaagaactagatggcggcggcagccacCA
CCGCAGACGCCCACAGCACCAGccgaacctcctctccctctgccgccgcc
tccgccagcagcCTGCCCGCCTTTGATTTGAACAAGTACCTGCTCGACAA
GAAGGACGCAGTGGAAAGCGCGTTGGATGCCTCGCTCCAAGTGACCTCGC
CGCAAGTTGCGAAGATCACCGAGTCCATGCGCTACTCCCTTCTGGCGGGA
GGCAAGCGGATACGGCCGATCATGTGCATCGCCGCCTGTGAGATGGCTGG
CGGGACAGCCGAAGACGCGATGGCAGCAGCTGTCGCCCTGGAGATGATCC
ACACGATGAGCCTTATCCACGACGACCTGCCCTCCATGGACAACGACTCC
CTGCGTCGGGGCAAGCCCACGAACCATGTCATCTacggcgaggacgtggc
taTTCTGGCGGGAGATGCGCTGCTGTCCACCGCCTTCGAGCACGTGGCCA
AGCACACCCCGTCGCACGTGCCTGCGGAACGCGTCGTGAGTGTGATCGCG
CGCTTGGCCGCCTCGGTGGGGGCGACGGGGCTGGCGGGCGGGCAggtgat
ggatttggagtgcgagggaaaggaaggcgtggggCTAGAGGAGCTAACCT
GGATCCACACGCACAAGACGGCGGCCCTGCTGAAGGTGAGCGTGGCAGCG
GGGGCGATTCTGGGAGGGGcaagcgcggaggaggtggaggcgtgCGAGAC
CTACGCCCTGGACATCGGGCTGGCCTTCCAGGTGGCGGACGACATCCTGG
ACGTGACCGCGTCCACGGAGGCGCTGGGCAAGACGGCGGGGAAGGATCTG
AACATGGACAAGACCACCTACCCGAAGCTcctggggctggaggggagccg
ggaggaggcgaggcggctggtgggagaggccaaggcggcccTGGGCCGGT
TCGGAGGTCGGGCCGCGCCGCTTTTGGCGATCGCCGACTACAttgtggag
aggaagaactag

Synonyms

Publications