rna1905, rna1905 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1905
Unique Name	rna1905
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	522
Alignment location	CM002458.1:444466..447098 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphoribosylglycinamide synthetase
Orig transcript id	gnl\|cribi\|Naga_100002g115.4910.mrna
Orig protein id	gnl\|cribi\|Naga_100002g115.4910
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:444466..447098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g115	gene1820	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1905	rna1905-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28791.1	cds1900	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:444466..447098+
coding sequence from alignment at CM002458.1:444466..447098+

mRNA sequence

>rna1905 ID=rna1905|Name=rna1905|organism=Nannochloropsis gaditana|type=mRNA|length=522bp
ATGGCCTCCACGTCCCAATCCTCGCCCGCGTCGCCCGCCCCGAAGGGAAT
TTATCGGCCAAAACTTAACCTCGCTTATCTCTTTCCTCACTTGCGGGTAG
AAAGGGAAGTCCTCCGGGACCTCGGGGACAATGTAGAGATGGATCCTCTT
GGCATTCTGGACCATGGTAAATGCGTCCTCTTCGCGCAGCCGCCCCCTGA
CATCGTAACCCGTCTCTTCTTCCACTTCCCTGGCCGCGCAATCCGCCGGC
GCCTCCCCCTCGTTCACTTTCCCCTTGGGGAGGGTCCAGCCCTTCCCGTC
CCAATTGCAGACGAGGAGAACCTTGTCCTGCGCCCGATTCAGGCACACAC
ATCCGTAGACTGGCACAGAGTACTTATAGCTGTTAAATGCCTTCACGAGA
TCCGCGTTGAGGAAGAGCATCCGGGTGCGCATCCGCCAGAAAGTCTTCAT
AGTACCAATACGCCTGTTCAAGCTGGAAAAACAAGCGGTCCACCGAGGCA
AGCTCTTCCTCCGGTAGATTGA

protein sequence of rna1905

>rna1905-protein ID=rna1905-protein|Name=rna1905|organism=Nannochloropsis gaditana|type=polypeptide|length=312bp
MVLKPVRSAGTENVFFVSSLTEARRAFKAILGEANLFGERNDKVLAQEFL
QGQEYVVDCVSKGGIHKCVAIWAYDKAPCNGSKFVYFGVNLFESGDGARE
ERMTDYIFGVLDALGIREGPTHSEVIWLEGEDQPCLIEVGARPHGGEGTF
TELSTPCVSYNQLSVTLDAIEDNGKFEALPRRPGRLKAHAREATLVSRQA
GVLLAYPMLDEVRALRSYKSMEMKVVPGQDIPLTVDFLSTPGSVMLVHAD
WEVVVRDYEQIHAWEADGSFYEVVEDGVEGDEEGREEKGGEKAKGGEMKA
AKKEDKRASGAE

mRNA from alignment at CM002458.1:444466..447098+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1905 ID=rna1905|Name=rna1905|organism=Nannochloropsis gaditana|type=mRNA|length=2633bp|location=Sequence derived from alignment at CM002458.1:444466..447098+ (Nannochloropsis gaditana)
GCGAAGTCGCGCTTAAATCCTGTCTTTCGTCCTGGTCTTTACTTCATTTG
CATCTATATTTCAGTTGTATGCAGACAATCATCATCACAGTTGTGGCAGC
CTCGGCACGTATCCGATCCACATCgatcccccctctcctccctccttcca
gtcaTGGTCTGCGAGAATGAAAGCCAGCCATTGGCACTTTCAGAAACCTA
CGTCCGGCGGCGTCGTGGCAGCAGTATCACAGGTCGACGAGCCATAGTCG
TGGTCGATCCCCTGTCAAGTGGTGCGCTGTTGGCTCAGGTATGTGACGTT
CTTGCTAGGGAAGACACTTCCTTCGAATCACCGACTGAATGGTCAGGATG
GCCGGGTTTGCAcgcattttttaaaaacgATAGTTAGTTTAATTGCTAGT
GTAACAGTGGCAAGGGTTAAAAATTGGCAGGCATTTACCAAATCCTCAGG
TGTCATGCTCAGTATGCAGTCTTAATCGTCACGTGGGATATTACCGCTTT
CCCCCAGATGGCGCGCGACAGGGGTTACGCCGTCATTCGTgtcctctcca
ccaccttctctgAAGATGTACTGGCGCTGCTACCCGCCGCCTGCAAAGAC
CTCCAGTTCGCCGCATCCATCCAACATGCGGGCGACATCGAGGCAACCCT
GGCCTCCATCCGTTCGCTGGGGGGAGGCCCGCACAACGGAATTTTCGAAA
TCGTCGGGCTGACCTGCGGGTGCGAAAGCGGGGTCGAGCTGGCCGATGCT
CTTTCCGCCAGAtacggggaggggatgaagagcAACGGTGAAGCGCTCTC
TCACCACCGCCGCGACAAGTTCTTGATGGGCGAGCGGGTGAGAGGCGCAG
GGTTGCGGGCGGCGCGGCAGGTGGAGACGGCGGAGTGGGAGGGCCAGGAG
ACAAGGGAGATTTCCAAATGGTGTTGAAGCCGGTCCGGTCAGCCGGCACC
GAGAACGTTTTCTTCGTGTCCTCCTTGACGGAGGCTCGGAGGGCCTTCAA
GGCCATTCTGGGGGAGGCAAACTTGTTTGGAGAGAGAAACGACAAGGTCT
TGGCCCAGGAATTCTTGCAGGGACAAGAGTATGTGGTGGACTGCGTCTCC
AAGGGCGGCATTCATAAATGCGTGGCGATATGGGCCTATGACAAGGTGGG
TTACCCAGGGCGGACCGGGGGCTAAGAGGCTCTCTCTCAACccctcgctt
tctctcccccctcccccccaggcTCCCTGTAACGGCAGCAAGTTCGTCTA
CTTCGGAGTCAACCTCTTCGAGTCCGGAGACGGGGCTCGGGAGGAGCGGA
TGACCGACTACATATTCGGCGTTCTGGACGCTCTGGGGATCAGGGAGGGG
CCCACGCACTCGGAGGTGATatggctggaaggggaggaccagCCCTGTCT
GATTGAGGTTGGCGCGCGGCCgcacggcggggaggggactTTCACGGAGC
TCTCCACGCCCTGCGTCTCCTACAACCAGCTCTCCGTCACCCTGGACGCC
ATCGAGGACAACGGGAAGTTCGAGGCCTTGCCCAGACGCCCGGGTCGGCT
CAAGGCCCACGCGCGAGAGGCGACGCTGGTATCGCGCCAGGCGGGGGTCC
TGCTCGCCTATCCCATGCTGGACGAGGTGCGGGCATTGCGCTCTTACAAG
AGCATGGAGATGAAGGTGGTGCCGGGGCAAGACATTCCCCTGACCGTAGA
CTTCCTGTCGACGCCGGGAAGCGTGATGCTCGTGCACGCGGActgggagg
tggtggtgagggacTACGAGCAGATCCACGCCTGGGAGGCAGACGGCAGC
TTTTACGAGGTGGttgaggacggggtggagggagacgaggaggggcgtga
ggagaaggggggagagaaagcgaaaGGGGGCGAGATGAaagcggcgaaga
aggaggacaagcgTGCGAGTGGAGCGGAGTAGGAGCCGTGGGACGCGTGC
AGGCAGTCTCTTTCCAACGAGGTATCCCGTCTGGCGTTGTGGGGAGCCCC
TGTACGCTGACCTCCTTTCATTGTTGCGAATTCCGACACCTGTGGGTTTC
TGATACGAATTGGAGAATGTCTATGGGCGGAGTGCGCCGGCGTCTCAGCT
GTGCTTCCCTTCACGTATCAACAAAAAGTGTGAATTGAGGAAGACCCGGG
CTGAGAGTAAGTCTTTTGCGGAAGCTGATTGTAAGTGTTCTgtagaagaa
gaagaccTATTGAAGTCTCCCACGTATTTGTTTCTTTCTATGGGCCTACT
GGACACACGTCCGACGGTGAGCGCGTCATCAAGCTGGCCTTGGAAAGCAC
AAAATACCGAATACAGACGAACAAGCGGGGTCCGCAAGTAGTTTGCTTCT
TTTTGTGCTCCCTTCTGGAGCCCGCTTACCCTGCAGGATGGGGGTGAGTA
GGAGTGTACATCAAAAGGGTATCCAGGAGGTCGTTATGTACAAGAGGGGA
GGTGCACGCTCGCCCCGGATTTTTGTCCCCCAGCCACGCCCGAGAATCCC
GCCAGCCAGgctgccttttccttccttcaagGACCAATGTACAAAGTGCA
TATACATGTCCGCCGGCTCCGCCTCTCAGGAGAGACTGCAGCCGGCCTGG
TATTTGGCTGCTTTCGCCACCTGCTCCAAGCCC

Coding sequence (CDS) from alignment at CM002458.1:444466..447098+

>rna1905 ID=rna1905|Name=rna1905|organism=Nannochloropsis gaditana|type=CDS|length=1878bp|location=Sequence derived from alignment at CM002458.1:444466..447098+ (Nannochloropsis gaditana)
ATGGTGTTGAAGCCGGTCCGGTCAGCCGGCACCGAGAACGTTTTCTTCGT
GTCCTCCTTGACGGAGGCTCGGAGGGCCTTCAAGGCCATTCTGGGGGAGG
CAAACTTGTTTGGAGAGAGAAACGACAAGGTCTTGGCCCAGGAATTCTTG
CAGGGACAAGAGTATGTGGTGGACTGCGTCTCCAAGGGCGGCATTCATAA
ATGCGTGGCGATATGGGCCTATGACAAGgcTCCCTGTAACGGCAGCAAGT
TCGTCTACTTCGGAGTCAACCTCTTCGAGTCCGGAGACGGGGCTCGGGAG
GAGCGGATGACCGACTACATATTCGGCGTTCTGGACGCTCTGGGGATCAG
GGAGGGGCCCACGCACTCGGAGGTGATatggctggaaggggaggaccagC
CCTGTCTGATTGAGGTTGGCGCGCGGCCgcacggcggggaggggactTTC
ACGGAGCTCTCCACGCCCTGCGTCTCCTACAACCAGCTCTCCGTCACCCT
GGACGCCATCGAGGACAACGGGAAGTTCGAGGCCTTGCCCAGACGCCCGG
GTCGGCTCAAGGCCCACGCGCGAGAGGCGACGCTGGTATCGCGCCAGGCG
GGGGTCCTGCTCGCCTATCCCATGCTGGACGAGGTGCGGGCATTGCGCTC
TTACAAGAGCATGGAGATGAAGGTGGTGCCGGGGCAAGACATTCCCCTGA
CCGTAGACTTCCTGTCGACGCCGGGAAGCGTGATGCTCGTGCACGCGGAc
tgggaggtggtggtgagggacTACGAGCAGATCCACGCCTGGGAGGCAGA
CGGCAGCTTTTACGAGGTGGttgaggacggggtggagggagacgaggagg
ggcgtgaggagaaggggggagagaaagcgaaaGGGGGCGAGATGAaagcg
gcgaagaaggaggacaagcgTGCGAGTGGAGCGGAGTAGATGGTGTTGAA
GCCGGTCCGGTCAGCCGGCACCGAGAACGTTTTCTTCGTGTCCTCCTTGA
CGGAGGCTCGGAGGGCCTTCAAGGCCATTCTGGGGGAGGCAAACTTGTTT
GGAGAGAGAAACGACAAGGTCTTGGCCCAGGAATTCTTGCAGGGACAAGA
GTATGTGGTGGACTGCGTCTCCAAGGGCGGCATTCATAAATGCGTGGCGA
TATGGGCCTATGACAAGgcTCCCTGTAACGGCAGCAAGTTCGTCTACTTC
GGAGTCAACCTCTTCGAGTCCGGAGACGGGGCTCGGGAGGAGCGGATGAC
CGACTACATATTCGGCGTTCTGGACGCTCTGGGGATCAGGGAGGGGCCCA
CGCACTCGGAGGTGATatggctggaaggggaggaccagCCCTGTCTGATT
GAGGTTGGCGCGCGGCCgcacggcggggaggggactTTCACGGAGCTCTC
CACGCCCTGCGTCTCCTACAACCAGCTCTCCGTCACCCTGGACGCCATCG
AGGACAACGGGAAGTTCGAGGCCTTGCCCAGACGCCCGGGTCGGCTCAAG
GCCCACGCGCGAGAGGCGACGCTGGTATCGCGCCAGGCGGGGGTCCTGCT
CGCCTATCCCATGCTGGACGAGGTGCGGGCATTGCGCTCTTACAAGAGCA
TGGAGATGAAGGTGGTGCCGGGGCAAGACATTCCCCTGACCGTAGACTTC
CTGTCGACGCCGGGAAGCGTGATGCTCGTGCACGCGGActgggaggtggt
ggtgagggacTACGAGCAGATCCACGCCTGGGAGGCAGACGGCAGCTTTT
ACGAGGTGGttgaggacggggtggagggagacgaggaggggcgtgaggag
aaggggggagagaaagcgaaaGGGGGCGAGATGAaagcggcgaagaagga
ggacaagcgTGCGAGTGGAGCGGAGTAG

Synonyms

Publications