rna189, rna189 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna189
Unique Name	rna189
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3950
Alignment location	CM002455.1:493946..495090 -

Link to JBrowse

Properties


Property Name	Value
Product	light-harvesting protein
Orig transcript id	gnl\|cribi\|Naga_100013g28.9786.mrna
Orig protein id	gnl\|cribi\|Naga_100013g28.9786
Gene	Lhcv3
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:493946..495090 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Lhcv3	gene180	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30498.1	cds189	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna189	rna189-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:493946..495090-
coding sequence from alignment at CM002455.1:493946..495090-

mRNA sequence

>rna189 ID=rna189|Name=rna189|organism=Nannochloropsis gaditana|type=mRNA|length=3950bp
ACCCATCTGTCGACAGTTCTCATGGCTCACATACGGGATGGGTTAAATTT
TGCCACAGGATCGCGCGGCACGCTTTGCTTCTTACGACTTTGCCGTTGCA
TTGACCTCGTCGTCCCTCCTCATCCCATCCTCCTCTCGAGATACACGAGG
AGCACATCAATGTAATGCACAATGTTACAGTTCTTTCCCCAATAATCAGA
TTTAATGGGTGAGGAGCGTGGTAGTCAGCCGCCCGCCTTGCAATTGCAAA
ACACGCGGGGTTCATTGTCCCGAAACGCGAGTGCCCCCGTTACTTCTTCC
GCTTCTATCCCCGATGACGCCGCTTCACTTAAAAACGTCAGCAACAGCTT
CAGTCCCCTGTGCAATGATATTGCCAGTCAATCTGTTGCTAGTGACCCAT
ATGCACGACCGCAGGGGGCGACGCGTTTGATAATCATGGATCCTCGTGCC
TCGGGGGGTGGTTATGGAGGAAGTGGAGGGAGTGGAGCAGGAAGAGGAGA
AATTAAAGGAGGTATCGGAGGGGGGAGAGGAGGGGCCTTGGGAAAAGGTC
ACAGGGGGCAAGGAAGGGGGGAAACAGGGAGTAAATGCCTAGATCTTGTC
GCGACAGATGGAAGAGAAGGTACATTACGGCAGCAACACCCGCAAACATT
TTCCCGAGACATTGAGAAGTCTACCAACTTCTCGAAAGATCCAACGGCTC
CCAGAAGTATCAGCAGTCAGCAGAGTCAACAATCTGCAGGCGGACGATTG
GGCGGCAGCAACGGATCACGACCGGGCGGGCTCGAGCTCACGAATATACG
CAACTCCCTTCCTAATCCTCCTCGACAAACCTCTAACGATCAGGCTCTCT
TCCACGGCCCTCGGCCGCCGATGAATAGACATGTACCCTTGCACCATAGA
GAACCTTTACTGAGGACTCAGCAACGCCAGCAAACTGTCCAGCACCTGCA
GCATGTGCAGTCAAGGGAGGCCCGGACGAGAGCTGCCGACCAGCGAAGCT
CCGCTATCCCGGTTCCTCCGTCGGGCTTGCGACCTGACACGACAAGCTCT
GCTGCTGGCGACTCATGTCGTCCGCTTCCACCGCACACACAAGCCGCCCA
GACGTACAAGCCCCCTCATCAGCCGCTACTTTCCCTGCCCCCCCCCCCCC
GCCGACCTCTGAACCCCGAAGCGCGAGCACGGGTGTGGCACGTTATCACG
TCGAATGTGACCACCACGATGCTTCAAGGAAAGCAGCGATGGGAGTATGG
GTCATGTCCGTTGCTCAGGCACAGCCAGGGTCACAGCCACAGATTCCACG
CCCGCGCAGAGAAGGACAAGTACACCAGCAGCAACAGCAGCAGCGGCAGC
AACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCATCAGGAC
CGACAAGGGCACTCGCAGCACCAAGAAGGAGATGCGAGCGCGGCCATTGA
CAGCCTCCGTGCGGCGCTGGTAGTGTTACAGGAAGAAAATGCAAACCTGC
GGACGCACAACTTCGACTTGAGCGCCTCCTTGGTGATGGAGGAGGCAGAG
CAGTCACGTTTACGACAGGATATGAAAAAACTGGAAAGTGAGAAGGCATT
CATGGCACAGGAGGTCAGGGAGGCAGACCGTATGCGTGCCCGTGCGGAGA
AGGAGAAGGAGCTGCAGCGTCAACAGCATTGCAACCAACCTGGTGCACGC
GAGGAGATGTCGTTATCGTCAGGCAGCGGAAACGAGCAGGAGGGCATGGG
CAAGAAAGAGAAAAAAAGAAGGATCGTAGGTCGTGAGGATGGTCTGTCGG
CATCCGGACGCGGGGCAAGCCAGCTTTCAGAACACAAGGAAATAGGACGG
GAGGAGATGGAAGATGCAGGCCCGGATGGAAGGAAAAATGAGACGTCAAC
GGCAAGCGATGCAATCGTCGAGGAGAACGACCTCCATGCTTGTGAGGAAG
CGCTGGCAGCATTAAAGTGTCCCGTGCCGTCCACATCGCTCGTTCTCCAA
TCCTTGGTCGAGAGCCTGTGTCTTCTGCTGAGTACCGGCACTCCACACGT
TCGAAGAAACAACGAGGATACGCGACAAATGGAATGCTGGTGGAGCAGCG
CCTTCAAGGAAGAAACTGGTCACTCACAAGTGCTCGCTCGCAGCCTAGGG
CACAATTTTCCCACCCACGTGCGCCATTTTGGAAAAGAAGCGGATGGTGC
TACGGAAGCGACCGGAGGAAGGCGATTTGTTCCTTTATCTGCCTTCTCCT
CCTCTGGTACCTGTGATGCTTCCATCAGGGAGGGCCTCACAAACGGTGAT
AACAGCACTATGAACTGTAGTATCGCCTCTTCTATGGCCACCCAGCTGTA
CCTCTCTCTTTGGCCCATCTCCTCTTCTCTTTTCTTCTCACCCTCGACTA
GTCATTTAATGCCGGACGTCCAGCAAGATACTGACATGTCCAGCAGCATG
CTCCTCCCAATTATTCAGAGCCTTGGCGCGATGTTCCCGCAAATGCATGC
GTTAGGCACGGACAAGGTAGTTGCGGCGCTGCGAGTTGCCCGTTGTCTCC
TTAGCCTTTGCCCAGGCGAGAGCCGAGAGATGGCGCTCGTATCCGGAGGG
CATGAGAACGAAGGGGAGAACGCTGATCGTAAGGGGGACAAGGATACATG
CTCGTCTTCGTTCATGCAGCGCTTCCAAGGTTCGAAGGTGGATGCCGAGC
TACTACGATGGGCAGCGACGGGGGGGATGGATGGAGAAGGTGCGCGACAA
GGTGGAAGTGGGAACAAGGAGGCGATAGGCTCATTTCTGAATCGATTGCT
CGAATTGATCGACTGGGTGGGTGAGCACTGGAAAGACGGTCACCCATCGT
ACGACTCGACCGACCCGTCTTTCCCCCTCCTTCAAATGACCTCGGAGGCC
CTCGCCGTTTTACTTGTCCTCTGCCAGGAGCGTAACGGCTGCTTCTCGTC
CCTCGGTTCCTTTGGGTTTTCTTCATGTTGGGCCACGGCCTGGTTGCGCC
GTCCTACTCTGCCTTTACTCTTGGAAGGTGCCCTGAGGGCCCGCCACGTC
GAGCTAGTGGACCTATGCCTCCAATTGACACACGCCCTCTCCCAGCAATC
CCCTCGTCTTTTTCAAGCGCTCGCAGGATTGAAATCGGGTGCATTTCTGT
CGAACGTAGCTTGTCAGGTATTTGATTGGCACCTGGAGAGTATGACATGG
CCCATCGAAGGTAAGAGAGGCCGACGTGCGAGGAGCGGTGAGACGATTCC
GTTTGAATACAAGGGCGAGAAAAGAACATCGCAGATTGACGGGTGTGAAA
TGGTACCCCGAAAATCTAGATTGCAGTCTCCAACTTCTTCTCCTCACTCC
GCCTCTGGCCTAGAGCGGCTGTGTCTCCGGATGACACGCTTTCTTTCGCG
TGTTTGTATTTCTTACGGAACCTCAGCAGTACACGTCTTCCTCCACGCGC
CCCTTTTGGATAACGAGGACAAGAATTACAGCCTGAACCACACCGATACT
GGCATGCAAAACGGTCACATACTAGCTCGACTAGTAGGCGTCGTGCACCA
GGCAATCCACAGATTGCTCAGGCGAACCGGGAACCCAAGTTTTTTTCCCT
CAGACACCAGCCAAGAACAATGGCAGCTGCAGCGTATGCTCGCTCGAGAG
TCCTTTGAGTTGTTGTCTCTCCTCAGTGCGAACAACCCTGCGGGCCTGAG
TGCTGGCCTGGACGGGTCGGGCTGCCGGTGGACCCTCGAGGCGGTAAATT
TCCGACTAATGAACAGCTTGGTGGAAGGACTTGAAGATTTGACAGACGAA
GCAGAAAATCTGCACATGTCATTGCAGTAAAAGCGAAGACAAGAACAAAG
AACGCATCGACCACAATGCAGACATCTTCCGAGGCACGCAGTCACGTCGA
GTGGCCAGGCTTAAAGACGGCCAAAAAATGAAATACATGACTGAATGATA

protein sequence of rna189

>rna189-protein ID=rna189-protein|Name=rna189|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MKTAFAFLALLGVSTAFMPTAPRMTRGRSVRMAVNEMIGSDVETNGVFDP
LGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPL
AALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIPD
DAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFG
DGQGAF

mRNA from alignment at CM002455.1:493946..495090-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna189 ID=rna189|Name=rna189|organism=Nannochloropsis gaditana|type=mRNA|length=1145bp|location=Sequence derived from alignment at CM002455.1:493946..495090- (Nannochloropsis gaditana)
CACCTGCCGCCCTTGCTCTGCGACAAGCGTTTCATCATGCATTCGTCTGT
TCCTCATCCCTTTTTGCCCTCGCTTGCATGATTCATGCTTTCGTATATGG
CTGCAATCATATTATTATTACAAGATTTACGTCTGGATTGCACACAAACT
TCCGTGTCGAAGTTTCTAGTGCCTACACTTACCATCTCCTACCTTGTATT
CCCCTTATCTCCGCTCCGATTTGTACATCACCTTTCAGACATCCACACTG
TCAAATATGAAGACTGCATTTGCCTTCCTAGCCCTCCTGGGCGTCTCCAC
TGCCTTCATGCCCACTGCTCCGCGCATGACCCGAGGCCGCAGTGTGCGCA
TGGCTGTGAACGAGATGATTGGCTCGGATGTTGAGACCAACGGTGTCTTT
GACCCCCTTGGTCTTGCCAAGGATGAGGCCTCCCTCTACCGTTCCCGTTT
GATTGAACTCAAGCACGGCCGCGTTGCTATGTTGGCTTGCCTCGGTACCC
TTGTGCAATCGTTCTACCATTTACCCGACGAGGTCTTCTCCAACCCCCGC
CCCCTCGCCGCCCTCGCACAAGTGTATTCTGAGCGTCCCGTAGCCTTCTG
GCAGATCTTCCTGGCTATCGGTGCCATCGAGCTTACCATCGGCAAGCAGG
ACACCGCCAACCGCGCCCCCGGTGACGTCGGCTTCGGCGCTGCTTTCATC
CCGGACGATGCGGAAGACTTCGCGGCTCTCCAGCTCAAGGAGCTTAAGAA
CGGCCGCTTGGCTATGATGGCCATCATTGGACAGTTCGTGCAGGAGAAGC
TGACGGGCCAGGGACCGATCGAGCAGCTGTTGGAGGGGCACTTTTCTCCC
TTCGGTGATGGACAGGGAGCTTTCTAAGCGCCCATCCCTTCGCCTCGCCC
CCGTCCTTTCTGTAAGTCCAAGCAAGTTCGGAGACGTCTCATTTGTGTCG
AAATACGAAGCAGGCAGGAGAGGTGAGCGGGCAATGTGATTTTGTTTTGT
GTAGCATGACGCCTGGAACAGAATTCCGCGGAATAACCGGTCCTGTGTAG
GGCGTGAAGACGGCGGGGGGCAATTGACCTACCAAAACAAGAGGAGGGGA
CAATCAACAAAGAAAATAGACTTCATTCCTGATCGCCGCGCTTGA

Coding sequence (CDS) from alignment at CM002455.1:493946..495090-

>rna189 ID=rna189|Name=rna189|organism=Nannochloropsis gaditana|type=CDS|length=621bp|location=Sequence derived from alignment at CM002455.1:493946..495090- (Nannochloropsis gaditana)
ATGAAGACTGCATTTGCCTTCCTAGCCCTCCTGGGCGTCTCCACTGCCTT
CATGCCCACTGCTCCGCGCATGACCCGAGGCCGCAGTGTGCGCATGGCTG
TGAACGAGATGATTGGCTCGGATGTTGAGACCAACGGTGTCTTTGACCCC
CTTGGTCTTGCCAAGGATGAGGCCTCCCTCTACCGTTCCCGTTTGATTGA
ACTCAAGCACGGCCGCGTTGCTATGTTGGCTTGCCTCGGTACCCTTGTGC
AATCGTTCTACCATTTACCCGACGAGGTCTTCTCCAACCCCCGCCCCCTC
GCCGCCCTCGCACAAGTGTATTCTGAGCGTCCCGTAGCCTTCTGGCAGAT
CTTCCTGGCTATCGGTGCCATCGAGCTTACCATCGGCAAGCAGGACACCG
CCAACCGCGCCCCCGGTGACGTCGGCTTCGGCGCTGCTTTCATCCCGGAC
GATGCGGAAGACTTCGCGGCTCTCCAGCTCAAGGAGCTTAAGAACGGCCG
CTTGGCTATGATGGCCATCATTGGACAGTTCGTGCAGGAGAAGCTGACGG
GCCAGGGACCGATCGAGCAGCTGTTGGAGGGGCACTTTTCTCCCTTCGGT
GATGGACAGGGAGCTTTCTAA

Synonyms

Publications