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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100002g155.4903.mrna |
| Orig protein id | gnl|cribi|Naga_100002g155.4903 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:337076..339760 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1870 ID=rna1870|Name=rna1870|organism=Nannochloropsis gaditana|type=mRNA|length=2137bp
CGCGGGAAATGTACACGTCGTTTCCGAGTTGATCGTGTGCTTTGCCGGGT
CGTGTCGCGTTTTTACCTCCTCCCCGCTACAACCCGCTCTTATGTGGTTT
CTTTTTCCCTCCTTTTTCTATAGGAACAAATGGCTTCCTCTTCCACCACC
GCCCACGCAGCTTCGTCTGCTGTCGGTGACAAAAAGGATACTCCACAAGA
AAGATTGGCGGCCATGCTGGAAGACCCTCGGTATAAACAAGGAGTGGCTT
TGTGCAAACGAGGACAGTTTGACGAAGCGCTTGAGTTCCTAGGCTCCTGC
GTTGCCCTTGCTGCCAGCGAGGATGATGTGTCTCTCGCCGCGGCTCCTGT
GTATTTTGCATATGGCGATGCCCTCCTTAGTAAGGCGGAAGAGTCCGTTG
ACTTGTTTGGAGCTGCCATGACTGCCGCGAAGGAGAAGGTGGGAGAGGAG
GAGGAAGGCGAGGAAGAGGCGGAGGAGGAATGTGAAGGTCATGGGTCAAC
CTCGGATGCGGCGGCCGCATCGTCAAGTAATGAGGCTAACAGCAGTAACA
ATGGTGTGGCAATGGCAGGGGGTGAATCCTGTACAAAGGCACCTGCCACG
GCGTCTAGCAAGGCCATCGGGGAGACTGCTTACGAGGAAGGGGACACGGG
GGGGGAAATCACGAAAGTAGGCATCCCTGAAGACGTACAAGACGATTTGG
AGGTGGCTTGGGAGAACCTGGAGGCGTCCCGTGTGATCTACCACAAGCAC
GAGGACATGGTGGACCCCATGAAGCTGGGAGAGGTCTACTTGCGCTTGGG
TGACTTGCAAAAAGCCAACGGCAACTTTACACAGGCCGTGGACGATTACC
TTCGGAGTCTGGAGATTTATGCAAAGGTCTGTGACGAAGATAGCCGTGTG
ATTGCCGATCTGCACTACCAGCTGGCCATGATGTACATATACGCGTCCGT
GGAAGAGGAGCACGCCGTGACTTTCAAGTCCAAGGCGCTGGAGCACTATA
TTCAATGCGCACGCGTATTCGAAATCCTAGTGGAGAAGGCCCGAAAGGCA
GCCGCCACGGCGGGAAAAGTCGGGGATGGAGAAGAGGATGGGTCGAGCTT
TCCGAAGGAGGGGCGAAAAGAGGGCGAGGACGCAGTCAAGTCTCCGCCTC
CGCCGCCCAAGTCCACGCCGGCAGAGGACTTGAAGGAATTCGAAGAGATT
CTAGCGGAGCTGCGGGAGACGATCGAAGCGACGAGGCAAGAGCTGTCGGC
GGCGGGCTCTGTTGCCAAGGCGCCGGGCCCGGTGACCACGATTGGTTTCG
GGCAACCACTTGCCTCCTCGCTAGGGCCACCTGCGGCTCATGGGGAAGCA
GAAGGAATTAGCAGGAATGGGAGTGGCGGCGGAGCCGCACACTTGAAGGG
TCAGAGTGAAAAGATGGGACCGCGCACCTTGGACGGAGGCCAGGCTTCGG
TTGCTACCACCGCGGCTGTTAATGTTATGGCGGTGAAGAAAAAGACCAAG
TCTCTGATCCCCACCGCCTCTTCTTCTCCCCGTGAACCATCTGCTGGTCT
CTCAGCAGCGGCCGCTGGGAAGATGGAGGCAAAGAAAGATGATCTAGAGC
CCCAGAGCGAGGAAAAGATGAGTCCGAAGAAAAGATTGGTCACCGAGCAA
ACTGAGGGACCTGCTGAATTGCCCATTTCCAAGGAAGCCCGGTTTGAGTG
AAAATGGGAGGGAGAAGTTGGGTCAAATCCTCATTGATATGAGATGGGAA
GAAGAGGTCGGACAAGAAAAACAAACGGAAACTGACGTAAATATGCTTCA
ATGGTGGAGATAAAGGGATGACAACTTAGTAAAATGATTGGTTGCATGGT
TGTGCTGCAGAATATCGTTACGCTGCGTTTCTGTCAGACCTTGCGCTGGC
ACTGTGTCAGTTGCTGTACTAATTCGAAATTTTGGGAAGGACAGCTATTA
TTCCACCATTATTGAAGAATAAAATATTAAAACAGAGAATAAAAGGACCT
GAACATCTTACTCAACAACATGCCATGGTGGAAGTGATCACAAATTTCGG
TCGACCGGCCGCTTAGCGTCAAAAAGTTTGCGTGCTCTCCCGTGTGCAGC
GAGAAAATCTCATGGAGAACGTTGAATTGGGTTATGG back to topprotein sequence of rna1870 >rna1870-protein ID=rna1870-protein|Name=rna1870|organism=Nannochloropsis gaditana|type=polypeptide|length=693bp
MSIEDHPRQQHNNQQHPQRQDQLHDAQSRPQGHRRDQQAHAKKVSGVPGG
HATLPMKKKKGPSRVHNQRAPVIQAEEHSLGADVSETAVPTPSVAAALKP
KQKRQPPQSQQHSTQQSEPQQQEGEKKKAHATDSASGPLSSGARVVEKEE
SPFVLVLTKKTRALKKKLDRIKALEEARDDQKKAAILNEEQMALVASKEG
LQRSLHETEGVKAALMEVAKEEEVKLAARHVEEEKKIALRKTQHLQQELK
LQQLQQQEAKLQLKVVEQQKEIERQKAAVHVAREEAARASDAAAAATPPL
HLIMEQVERLFRVIHVYRSCLEMNTPANQLLGLDVFAKVLLGQASPSEAS
FDAKLEHAVKWAGHYLIATSLPPGPGATEAGLVVQEEAKRLEFAPGMTVG
AMEAHLKHLLGRFSQPKPASVPAFPPSPASGPPVPVQAMAGLSIKEENGS
PRRKEASWELVEAPNQEEVRQHLALQAILQKREQDEALGPDVKREEGGGE
GADGNSSLPLGRLVNPTGDKGRPVEDGFQKQNTLTGPGKRTQPRTYHKPS
RSHGPQSRRAMRGENAATVNGGTDTLVDAVAVAASAESSMAGVQTPTAVG
PVATRKTDAGSQVSKQNAIKKEAKATGNVEAYPAGYGGNGPRRGPRRTGG
QGGGRGQGGMKKDGGGNKREGIPSTPYVPHAPQTTAGSGNLGH back to topmRNA from alignment at CM002458.1:337076..339760+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1870 ID=rna1870|Name=rna1870|organism=Nannochloropsis gaditana|type=mRNA|length=2685bp|location=Sequence derived from alignment at CM002458.1:337076..339760+ (Nannochloropsis gaditana)
ATTGCGTGAAATTTAGTGATCAcccctccgtttccttcaTGCCCTTCCTT
ACCACAGGACAAATTTTCAACGCCCAATAATTTCACTTTCCATGAGCATC
GAGGATCATCCCCGCCAGCAGCATAACAACCAACAACACCCGCAGCGTCA
GGATCAATTGCACGATGCACAATCGCGTCCGCAGGGGCACCGTAGGGACC
AGCAGGCGCACGCGAAGAAGGTTAGTGGTGTTCCTGGCGGGCATGCGACC
TTGccgatgaagaagaaaaaaggaccTTCTAGAGTCCACAATCAAAGAGC
GCCGGTCATTCAAGCGGAAGAGCATTCCCTTGGTGCTGATGTATCTGAAA
CCGCAGTCCCAACCCCCTCGGTGGCGGCCGCACTGAAACCGAAGCAAAAA
CGTCAGCCTCCGCAATCGCAGCAACACTCCACGCAGCAATCAGAACCTCA
ACagcaagaaggggaaaagaagaaagcgcATGCAACGGACAGTGCCTCTG
GGCCACTCTCTTCGGGGGCTCGGGTGgtcgaaaaggaggaaagcccaTTC
GTACTGGTATTGACCAAAAAGACGCGGGCCTTGAAGAAGAAGTTGGACAG
GATTAAGGCActcgaggaggcgcgggacgACCAGAAAAAAGCTGCGATCC
TGAATGAAGAGCAAATGGCCCTTGTGGCATCCAAAGAGGGCTTGCAGCGA
AGCTTACATGAAACCGAGGGAGTTAAGGCTGCCCtgatggaggtggccaa
ggaggaagaggtcaaGCTGGCTGCCCGccacgtggaagaggagaagaaaa
tcgCCCTTCGCAAGACTCAGCATCTGCAGCAAGAGCTCAAGCTCCAACAG
CTGCAACAGCAGGAGGCCAAGCTTCAGCTGAAAGTGGTCGAGCAACAGAA
GGAAATTGAGCGGCAAAAGGCAGCTGTTCATGTCGCCAGAGAGGAGGCTG
CCAGGGCCTCTGACgcggctgccgctgccacccctcctctgcattTGATC
ATGGAGCAAGTGGAGCGCCTCTTCCGAGTCATTCACGTGTATCGGTCCTG
TCTTGAGATGAACACGCCTGCTAACCAGCTCCTGGGCCTCGACGTCTTCG
CCAAAGTCTTGCTGGGGCAAGCCTCTCCTTCTGAGGCGTCCTTCGACGCC
AAACTGGAGCACGCGGTCAAGTGGGCAGGCCACTATTTGATTGCCACGTC
CCTTCCACCGGGCCCAGGCGCGACGGAGGCTGGACTCGTGGTGCAAGAGG
AAGCTAAGCGGCTGGAATTTGCCCCCGGCATGACCGTGGGTGCGATGGAA
GCGCATTTGAAGCACTTGCTGGGCCGCTTTTCCCAGCCGAAACCTGCGTC
CGTGCCAGcgttccccccttcccctgcatcTGGGCCTCCTGTTCCTGTCC
AGGCGATGGCCGGCCTTTCCATTAAGGAGGAGAATGGCAGCCctaggaga
aaggaggcgtcGTGGGAGTTGGTGGAGGCACCGAACCAGGAAGAGGTGCG
GCAGCACCTAGCTTTGCAGGCGATTCTGCAAAAGCGTGAGCAGGATGAGG
CGCTGGGGCCAGAtgtcaagagggaggagggaggcggggagggtgcggAT
GGGaattcctccctgccgctAGGAAGGCTGGTCAATCCCACGGGAGACAA
GGGACGCCCGGTAGAGGACGGCTTTCAGAAGCAGAACACACTCACCGGAC
CTGGTAAGCGGACGCAGCCGCGCACATATCACAAGCCTTCCCGATCCCAT
GGTCCTCAATCGCGCAGAGCTATGCGCGGGGAGAATGCCGCCACAGTCAA
CGGTGGCACTGACACACTGGTAGATGCTGTCGCTGTCGCGGCCTCTGCGG
AAAGCTCCATGGCAGGCGTGCAGACTCCGACAGCTGTGGGGCCTGTCGCT
ACGCGCAAGACGGACGCTGGGAGCCAGGTCTCGAAACAAAATGCCATTaa
gaaggaggcaaaggctACAGGAAACGTAGAGGCCTACCCTGCTGGTTACG
GAGGAAACGGGCCTCGGCGGGGTCCCCGAAGGACgggaggtcaaggagga
ggtcggggacAGGGCgggatgaagaaagatggGGGCGGAAATAAAAGAGA
AGGCATTCCCTCGACACCGTACGTTCCGCACGCCCCACAGACCACCGCTG
GCTCGGGGAATCTCGGGCAttaggggggggaaagaccgATACGGTTGCCG
GCCTGGATAGGATGTCGTACGATAATGTGCAAAATCGAAGCGCGACAAGG
CGATGGCAGATAAAATGCTGGGGATCACACCGGACGGGATCGCAGGTGTG
GCGGTGAGGCAACGACGGGGGTTGAAAACCggcgaaaagaaagcaaCATG
CAAAGTTACATCATGCACAAGTAGTAAAGGAGCAAGATGAGAGGAAGATC
GAACCCCATAGTGTTTTTCTTGAGACGGAGGATGCTGCGGAAGAACTCAT
CAGCAGGGTCGGCTCTGTGATTGCAGAGACCCTGGAGAAGAATTCGCGTC
CACTTGTCACTTCCGGCACCCACCTACCTCTCCATAAGACAATTGCAtat
gaggaagggggggaaaaggacgtgGCATTTTTAGGTCCACTTGCTAGGGA
CGGCCGTGGTAACGAGTAGGCCTTGACCAACGAGCGAAGAGTAAAGCAAA
ATAAAACACGCGCGTCTAGATCCTCGCGACGGGCT back to topCoding sequence (CDS) from alignment at CM002458.1:337076..339760+ >rna1870 ID=rna1870|Name=rna1870|organism=Nannochloropsis gaditana|type=CDS|length=2082bp|location=Sequence derived from alignment at CM002458.1:337076..339760+ (Nannochloropsis gaditana)
ATGAGCATCGAGGATCATCCCCGCCAGCAGCATAACAACCAACAACACCC
GCAGCGTCAGGATCAATTGCACGATGCACAATCGCGTCCGCAGGGGCACC
GTAGGGACCAGCAGGCGCACGCGAAGAAGGTTAGTGGTGTTCCTGGCGGG
CATGCGACCTTGccgatgaagaagaaaaaaggaccTTCTAGAGTCCACAA
TCAAAGAGCGCCGGTCATTCAAGCGGAAGAGCATTCCCTTGGTGCTGATG
TATCTGAAACCGCAGTCCCAACCCCCTCGGTGGCGGCCGCACTGAAACCG
AAGCAAAAACGTCAGCCTCCGCAATCGCAGCAACACTCCACGCAGCAATC
AGAACCTCAACagcaagaaggggaaaagaagaaagcgcATGCAACGGACA
GTGCCTCTGGGCCACTCTCTTCGGGGGCTCGGGTGgtcgaaaaggaggaa
agcccaTTCGTACTGGTATTGACCAAAAAGACGCGGGCCTTGAAGAAGAA
GTTGGACAGGATTAAGGCActcgaggaggcgcgggacgACCAGAAAAAAG
CTGCGATCCTGAATGAAGAGCAAATGGCCCTTGTGGCATCCAAAGAGGGC
TTGCAGCGAAGCTTACATGAAACCGAGGGAGTTAAGGCTGCCCtgatgga
ggtggccaaggaggaagaggtcaaGCTGGCTGCCCGccacgtggaagagg
agaagaaaatcgCCCTTCGCAAGACTCAGCATCTGCAGCAAGAGCTCAAG
CTCCAACAGCTGCAACAGCAGGAGGCCAAGCTTCAGCTGAAAGTGGTCGA
GCAACAGAAGGAAATTGAGCGGCAAAAGGCAGCTGTTCATGTCGCCAGAG
AGGAGGCTGCCAGGGCCTCTGACgcggctgccgctgccacccctcctctg
cattTGATCATGGAGCAAGTGGAGCGCCTCTTCCGAGTCATTCACGTGTA
TCGGTCCTGTCTTGAGATGAACACGCCTGCTAACCAGCTCCTGGGCCTCG
ACGTCTTCGCCAAAGTCTTGCTGGGGCAAGCCTCTCCTTCTGAGGCGTCC
TTCGACGCCAAACTGGAGCACGCGGTCAAGTGGGCAGGCCACTATTTGAT
TGCCACGTCCCTTCCACCGGGCCCAGGCGCGACGGAGGCTGGACTCGTGG
TGCAAGAGGAAGCTAAGCGGCTGGAATTTGCCCCCGGCATGACCGTGGGT
GCGATGGAAGCGCATTTGAAGCACTTGCTGGGCCGCTTTTCCCAGCCGAA
ACCTGCGTCCGTGCCAGcgttccccccttcccctgcatcTGGGCCTCCTG
TTCCTGTCCAGGCGATGGCCGGCCTTTCCATTAAGGAGGAGAATGGCAGC
CctaggagaaaggaggcgtcGTGGGAGTTGGTGGAGGCACCGAACCAGGA
AGAGGTGCGGCAGCACCTAGCTTTGCAGGCGATTCTGCAAAAGCGTGAGC
AGGATGAGGCGCTGGGGCCAGAtgtcaagagggaggagggaggcggggag
ggtgcggATGGGaattcctccctgccgctAGGAAGGCTGGTCAATCCCAC
GGGAGACAAGGGACGCCCGGTAGAGGACGGCTTTCAGAAGCAGAACACAC
TCACCGGACCTGGTAAGCGGACGCAGCCGCGCACATATCACAAGCCTTCC
CGATCCCATGGTCCTCAATCGCGCAGAGCTATGCGCGGGGAGAATGCCGC
CACAGTCAACGGTGGCACTGACACACTGGTAGATGCTGTCGCTGTCGCGG
CCTCTGCGGAAAGCTCCATGGCAGGCGTGCAGACTCCGACAGCTGTGGGG
CCTGTCGCTACGCGCAAGACGGACGCTGGGAGCCAGGTCTCGAAACAAAA
TGCCATTaagaaggaggcaaaggctACAGGAAACGTAGAGGCCTACCCTG
CTGGTTACGGAGGAAACGGGCCTCGGCGGGGTCCCCGAAGGACgggaggt
caaggaggaggtcggggacAGGGCgggatgaagaaagatggGGGCGGAAA
TAAAAGAGAAGGCATTCCCTCGACACCGTACGTTCCGCACGCCCCACAGA
CCACCGCTGGCTCGGGGAATCTCGGGCAttag back to top
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