rna1868, rna1868 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1868
Unique Name	rna1868
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1335
Alignment location	CM002458.1:332149..333822 -

Link to JBrowse

Properties


Property Name	Value
Product	membrane protein
Orig transcript id	gnl\|cribi\|Naga_100002g157.4895.mrna
Orig protein id	gnl\|cribi\|Naga_100002g157.4895
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:332149..333822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g157	gene1784	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1868	rna1868-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28776.1	cds1863	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:332149..333822-
coding sequence from alignment at CM002458.1:332149..333822-

mRNA sequence

>rna1868 ID=rna1868|Name=rna1868|organism=Nannochloropsis gaditana|type=mRNA|length=1335bp
ATGAAGCAATTTTTGGTGGATAATCGCGTGCCAATTTTTGCTCTGGTATT
CCTCCTTCCGGCAGCTACGTCTTTCATCTTGTCCTCGCACGCCCTGTGTC
AGCGGGTTGGGCCAATTAAGTACACGGAGAGGCCCTTCCAGGGCGGCCGA
ATTTGTCACCCGCTCCGCCCTTTCTTAGCTTTGGCTGCCTCAACCTTTAC
AATGGAGGTTGACGAAGAGTCAATGGCAGAGATACAAGAACCTTCGTACT
CCGAATCGGACCGCAAACACATGCGCCGTGCTTTGCATCTGGCCGCTCAG
GCTCTTGGAAAAACACGACCCAACCCCGTGGTCGGTTGCGTGATACTTGA
TCAAGAAGGGGTGGTAGTGGGAGAAGGCTTCCATCCCAAAGCCGGACAAC
CCCACGCGGAGGTCTTCGCCCTCAAGGAGGCAGGCGACAGGGCCAGGGGG
GGAACGGTCTACGTGACATTGGAGCCGTGCAACCATCACGGAAAGACCCC
GCCATGCGTTGACGCATTGTTGGAGGCCGGGATCAAGAAAGTGGTGGCGG
GCATGGTCGATCCCTTCCCCCTCGTTGGCGGCAAGGGCCTGGCCCGGCTG
GCGGACAACGGGGTGGAGGTGGTGGTGGGCTGTGAGGAGGGGAAATGTCA
GGCGTTGAACCGGCCTTTCGTGCACCGGGTACAGCATGGGACCCCCCTGG
GTTTCCTCCCCTTGACCTACTCCCGCCAGGATTTTGTCCGCCCGGCGCCC
GCTACAGTCCAGCTCGGGGACGGGGGGAAGGCTTTGGAGATGATCGACGC
GATTGTGGTCGATTTCAACGTGAAGGGAGAGGGCTTGCAAACGGTGGCGG
CCCTGCAGACTGCCGGACTCCTGCAGGATGAGGTAGTTCGGATCGTGTTG
GCGAACGATCTGAGTGCCCTGCCCGTGGAGTGGGCAAAACACAAGAAAGC
GAGTGTGCGGAAGGTGGTACTAACCACCAGCATAGCTGGACAAGAAGCAG
CAGTGGAGGTGCTGGAGGGCCGCGGTGTCGAGGTGATAGCCATGCCTACG
GACCCACTGGCGGTGGGGAAGTACATGCACGGCCTAGGGCTGCTCTCGGC
CCTCTGGTTGCTGTGTCCCGAGGGGGCGAAACGGGCGGTCAAGGCGGGAG
TGGTGCAAGACCTGTGGATACACGCGACACTGCAGGAGGCGGACGATTTG
GACGGGGTGGATGATCCGGATTTTCTAGGTCGTCAGTTTGGTCGACCTAT
GAAGATGTCGGTGATGAGCTGTGACGCAGTGGGAACCAAGGCGTGTTTGT
TGAGTTTGACTATAGACGATACTGCAACGCTTTGA

protein sequence of rna1868

>rna1868-protein ID=rna1868-protein|Name=rna1868|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MTPNAELKQRQLPESQKTTKSKLLDPARKGATTVSSVKRSASPTGISHLS
QEAGKVKTIRDAIRAEDKRLRAAYPFPLGEHWQSVVGLAIYVGSWVVWGI
ATYAWWTGGLSLPVLMVVNALAISLLHEMEHDLIHELYFKRQPWVQHVMF
MGIWLIKSNASPWWRKYYHLRHHQYSGQVNDVEERLIGLGLRWWSPKRLL
VTLTPAGTLLVANDIARDDPEFSRVNLVLSNSPVIVLSTAAMLVHLICAS
GGDAALVKAGVLSVPLHAFLSQRILPALFLYNAAVNFPNVLRQSCLVIIS
TYCHYYGDIPERDVFFQTQILDHPLLWPFQLFCFNFGATHIIHHFVTRQP
FYLRQVTAFRVLPIMKALGCRHNDMGNNFRGNRWVGGEKAVDGKGEMMAG
PREEGEDWTATTPRTSDDEDSGEEHIKGA

mRNA from alignment at CM002458.1:332149..333822-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1868 ID=rna1868|Name=rna1868|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp|location=Sequence derived from alignment at CM002458.1:332149..333822- (Nannochloropsis gaditana)
ATGACGCCAAATGCTGAGCTAAAACAGCGCCAACTACCAGAGTCGCAGAA
GACGACGAAGTCTAAGCTGCTGGACCCCGCACGTGAGTAAGCCGACGCTG
TATGGAGCAAATTGCTACTCGATTTTTGTGTCTTGTAGACGGATGTTCGT
TTTATCTCCACATACCTTTTGTCCTAAAGGAGATGAATCCCACTTAGTGG
ATGGACCTGCGGAAGTGTGAAACTGTTCCCCATGTTTGTGGCATACATTT
CCAAGACTTCATGGCTATGATGTTCCGACACAGACGTCCACGTCAGCAAG
ATGCGAAAGACATGTTTTCACTCCCTGTCGTCTGCACACATCTTATGCAG
CTTCACACATTCACCACTGTTTTTAATAAGGGCTCACATGCCATATTGCG
TAAAAAGTGAACAGAAAATAGCAGGCCTCTCTCTCACAAACAGCTCGATC
GCTCACATCGGCACAGGCAAAGGCGCGACGACCGTCAGCTCGGTGAAGCG
ATCCGCCAGTCCCACCGGTATCTCTCACCTTAGTCAAGAAGCAGGCAAGG
TCAAGACTATTCGAGATGCCATCCGTGCCGAGGATAAACGCCTCCGTGCA
GCTTACCCCTTCCCCTTGGGCGAGCACTGGCAGAGCGTTGTGGGCCTAGC
CATTTACGTGGGGTCGTGGGTAGTCTGGGGGATAGCCACGTACGCGTGGT
GGACGGGAGGGTTGAGCCTACCTGTGTTGATGGTCGTGAATGCCTTGGCT
ATCTCCCTCTTGCATGAGATGGAACACGACCTGATCCACGAGCTGTATTT
CAAGCGGCAACCGTGGGTACAGCACGTGATGTTCATGGGCATCTGGCTGA
TCAAGTCGAACGCGTCTCCGTGGTGGCGCAAGTACTACCACCTCCGGCAC
CACCAGTACAGCGGGCAGGTCAATGATGTGGAGGAGCGCCTGATCGGCTT
GGGCCTTCGGTGGTGGTCGCCCAAACGCCTGCTCGTCACACTGACCCCCG
CGGGGACCCTGCTGGTGGCGAACGACATTGCCCGGGACGATCCTGAGTTC
TCTCGGGTCAACCTGGTCCTCAGCAACTCCCCCGTGATCGTCCTCTCGAC
CGCCGCGATGCTCGTGCACCTGATCTGCGCCTCGGGCGGGGACGCGGCCC
TGGTCAAGGCAGGCGTGCTCTCCGTGCCTCTGCACGCTTTTCTCTCTCAG
CGGATCCTGCCTGCCCTCTTTTTGTACAACGCGGCCGTCAACTTTCCCAA
CGTCCTCCGCCAGTCTTGCCTGGTCATCATCAGCACCTACTGCCACTACT
ACGGAGACATCCCGGAGCGCGACGTTTTCTTCCAAACTCAAATCTTGGAC
CATCCCTTACTCTGGCCGTTTCAACTTTTCTGCTTCAACTTTGGAGCTAC
CCACATCATTCACCATTTTGTCACCCGGCAACCCTTCTACTTGAGGCAAG
TGACCGCCTTCCGTGTCCTGCCCATCATGAAGGCACTGGGGTGTCGGCAC
AACGATATGGGTAACAACTTCAGGGGGAATCGGTGGGTGGGGGGCGAGAA
AGCAGTGGACGGGAAGGGGGAGATGATGGCCGGGCCACGGGAGGAGGGGG
AGGACTGGACTGCGACGACCCCAAGGACCAGTGACGATGAAGACAGCGGG
GAGGAACACATCAAGGGGGCCTAA

Coding sequence (CDS) from alignment at CM002458.1:332149..333822-

>rna1868 ID=rna1868|Name=rna1868|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002458.1:332149..333822- (Nannochloropsis gaditana)
GCAAAGGCGCGACGACCGTCAGCTCGGTGAAGCGATCCGCCAGTCCCACC
GGTATCTCTCACCTTAGTCAAGAAGCAGGCAAGGTCAAGACTATTCGAGA
TGCCATCCGTGCCGAGGATAAACGCCTCCGTGCAGCTTACCCCTTCCCCT
TGGGCGAGCACTGGCAGAGCGTTGTGGGCCTAGCCATTTACGTGGGGTCG
TGGGTAGTCTGGGGGATAGCCACGTACGCGTGGTGGACGGGAGGGTTGAG
CCTACCTGTGTTGATGGTCGTGAATGCCTTGGCTATCTCCCTCTTGCATG
AGATGGAACACGACCTGATCCACGAGCTGTATTTCAAGCGGCAACCGTGG
GTACAGCACGTGATGTTCATGGGCATCTGGCTGATCAAGTCGAACGCGTC
TCCGTGGTGGCGCAAGTACTACCACCTCCGGCACCACCAGTACAGCGGGC
AGGTCAATGATGTGGAGGAGCGCCTGATCGGCTTGGGCCTTCGGTGGTGG
TCGCCCAAACGCCTGCTCGTCACACTGACCCCCGCGGGGACCCTGCTGGT
GGCGAACGACATTGCCCGGGACGATCCTGAGTTCTCTCGGGTCAACCTGG
TCCTCAGCAACTCCCCCGTGATCGTCCTCTCGACCGCCGCGATGCTCGTG
CACCTGATCTGCGCCTCGGGCGGGGACGCGGCCCTGGTCAAGGCAGGCGT
GCTCTCCGTGCCTCTGCACGCTTTTCTCTCTCAGCGGATCCTGCCTGCCC
TCTTTTTGTACAACGCGGCCGTCAACTTTCCCAACGTCCTCCGCCAGTCT
TGCCTGGTCATCATCAGCACCTACTGCCACTACTACGGAGACATCCCGGA
GCGCGACGTTTTCTTCCAAACTCAAATCTTGGACCATCCCTTACTCTGGC
CGTTTCAACTTTTCTGCTTCAACTTTGGAGCTACCCACATCATTCACCAT
TTTGTCACCCGGCAACCCTTCTACTTGAGGCAAGTGACCGCCTTCCGTGT
CCTGCCCATCATGAAGGCACTGGGGTGTCGGCACAACGATATGGGTAACA
ACTTCAGGGGGAATCGGTGGGTGGGGGGCGAGAAAGCAGTGGACGGGAAG
GGGGAGATGATGGCCGGGCCACGGGAGGAGGGGGAGGACTGGACTGCGAC
GACCCCAAGGACCAGTGACGATGAAGACAGCGGGGAGGAACACATCAAGG
GGGCCTAAATGACGCCAAATGCTGAGCTAAAACAGCGCCAACTACCAGAG
TCGCAGAAGACGACGAAGTCTAAGCTGCTGGACCCCGCACGCAAAGGCGC
GACGACCGTCAGCTCGGTGAAGCGATCCGCCAGTCCCACCGGTATCTCTC
ACCTTAGTCAAGAAGCAGGCAAGGTCAAGACTATTCGAGATGCCATCCGT
GCCGAGGATAAACGCCTCCGTGCAGCTTACCCCTTCCCCTTGGGCGAGCA
CTGGCAGAGCGTTGTGGGCCTAGCCATTTACGTGGGGTCGTGGGTAGTCT
GGGGGATAGCCACGTACGCGTGGTGGACGGGAGGGTTGAGCCTACCTGTG
TTGATGGTCGTGAATGCCTTGGCTATCTCCCTCTTGCATGAGATGGAACA
CGACCTGATCCACGAGCTGTATTTCAAGCGGCAACCGTGGGTACAGCACG
TGATGTTCATGGGCATCTGGCTGATCAAGTCGAACGCGTCTCCGTGGTGG
CGCAAGTACTACCACCTCCGGCACCACCAGTACAGCGGGCAGGTCAATGA
TGTGGAGGAGCGCCTGATCGGCTTGGGCCTTCGGTGGTGGTCGCCCAAAC
GCCTGCTCGTCACACTGACCCCCGCGGGGACCCTGCTGGTGGCGAACGAC
ATTGCCCGGGACGATCCTGAGTTCTCTCGGGTCAACCTGGTCCTCAGCAA
CTCCCCCGTGATCGTCCTCTCGACCGCCGCGATGCTCGTGCACCTGATCT
GCGCCTCGGGCGGGGACGCGGCCCTGGTCAAGGCAGGCGTGCTCTCCGTG
CCTCTGCACGCTTTTCTCTCTCAGCGGATCCTGCCTGCCCTCTTTTTGTA
CAACGCGGCCGTCAACTTTCCCAACGTCCTCCGCCAGTCTTGCCTGGTCA
TCATCAGCACCTACTGCCACTACTACGGAGACATCCCGGAGCGCGACGTT
TTCTTCCAAACTCAAATCTTGGACCATCCCTTACTCTGGCCGTTTCAACT
TTTCTGCTTCAACTTTGGAGCTACCCACATCATTCACCATTTTGTCACCC
GGCAACCCTTCTACTTGAGGCAAGTGACCGCCTTCCGTGTCCTGCCCATC
ATGAAGGCACTGGGGTGTCGGCACAACGATATGGGTAACAACTTCAGGGG
GAATCGGTGGGTGGGGGGCGAGAAAGCAGTGGACGGGAAGGGGGAGATGA
TGGCCGGGCCACGGGAGGAGGGGGAGGACTGGACTGCGACGACCCCAAGG
ACCAGTGACGATGAAGACAGCGGGGAGGAACACATCAAGGGGGCCTAAAT
GACGCCAAATGCTGAGCTAAAACAGCGCCAACTACCAGAGTCGCAGAAGA
CGACGAAGTCTAAGCTGCTGGACCCCGCAC

Synonyms

Publications