rna1860, rna1860 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1860
Unique Name	rna1860
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1292
Alignment location	CM002458.1:309892..311467 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g167.4933.mrna
Orig protein id	gnl\|cribi\|Naga_100002g167.4933
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:309892..311467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g167	gene1777	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1860	rna1860-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28814.1	cds1855	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:309892..311467+
coding sequence from alignment at CM002458.1:309892..311467+

mRNA sequence

>rna1860 ID=rna1860|Name=rna1860|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp
CCTGACCAATGAAAAGCTCGCCTGCCTGGTTCTTATATACAGGCATACCC
GTCATCATTGACATAAGAACTGACAGAACGCCTACAACGGTCGAAGCCAC
GTTCGCTCCTGCGCACTCTCTTTTAAGAGCGCCGACTCACTTTATCAACA
TGACCCGTAATGTTCCGCCCCTCTTCAATTTCGACTTCCCGTCCTGCGAG
TATATCACGCAACATCCGCGCACTCACGAGCTGCTAGGCTTTGTACTGGC
TGGCGTGGCCATCGGCCTCATCATTATAACAGTCCTAACCGTGTATCCGG
GAGAGCCTTTCGACTCTTCTGTACTGGGACCTATACACTGCAAGCCATTG
CAGTCAGAAAGCGATCGAAAAAGATTTCAAAGACTTGGGGACAAGCCGGA
GGAGATGGATGTAAATGTAGATTGTAGGCGTACCAGCACTTGTTCGGGGG
CGCATGCAATTACGTCAAAGATGTGGAATTATGACTCCAGCGGAGACAGC
TGTGACATTTTCCCAAGCAAGATTTCAAGCATCCGCCACGACTGCACCGT
TGACAGGGTTAAGAGTCATTTTTCTCCCCTCTCGACCACCCGGAAATCTC
GCTGCAATGGACAAGAACAGCAAGCCCAGGCTGACGCACTCCACCGCCTT
TTGCTTCGGGAAGACCGCGTGTGGCAGCAATTTCAACGCCTCCCTCGGAC
TTTTCAGAGCACGCTGGGTTTATCGGAATCTCAAGTGCGTGCGGCGATCC
GTCAAGAGGTATCGCAGGCAGAATTCGAGGTCCCACCGGGAACAGGTACC
GAGACACTCCCAAAGGACACAGGAGTTATCGTCGACCCTATGGGCATGTC
AATGCGAGTGAACCTAGCCTTCTATCTGATTGCTTTCGGCGCCTTGGTAT
ATTTCGTCGACATGGACTATGGTTATGCAGCCACATGCCTGTTCACTCGA
TGGTTTCCGAAAGAGGCAGAAGTATTAGGGTTCAAACCGGTTAGTGATTA
AGCATGACTGAGACAGCTTCCATGTGATTTGTACAAGGGAACTAGTTAAA
TCCAAGCAGTCTGAGGTTTATGTGAATAGATACGCACGTGTTTGTAAATG
TGGATTGTGTACATGCAAAGGTAATGAAAGCTAAAATGCATGGATTGAAG
GCATAGATGGACATCTTTCCTACGTTGGCAAGGACTTTAAGTTAAGATGC
TGAGTAAACCATACCTGGGAGAGTTCCGGGAATCGCCAGATTTGTGACAA
ACGTGTGGAAGAAAAACGAAATGAATGTCTTTCTCAAATACC

protein sequence of rna1860

>rna1860-protein ID=rna1860-protein|Name=rna1860|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTR
NVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEP
FDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHA
ITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCN
GQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQE
VSQAEFEVPPGTGTETLPKGVIVDPMGMSMRVNLAFYLIAFGALVYFVDM
DYGYAATCLFTRWFPKEAEVLGFKPVSD

mRNA from alignment at CM002458.1:309892..311467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1860 ID=rna1860|Name=rna1860|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp|location=Sequence derived from alignment at CM002458.1:309892..311467+ (Nannochloropsis gaditana)
CCTGACCAATGAAAAGCTCGCCTGCCTGGTTCTTATATACAGGCATACCC
GTCATCATTGACATAAGAACTGACAGAACGCCTACAACGGTCGAAGCCAC
GTTCGCTCCTGCGCACTCTCTTTTAAGAGCGCCGACTCACTTTATCAACA
TGACCCGTAATGTTCCGCCCCTCTTCAATTTCGACTTCCCGTCCTGCGAG
TATATCACGCAACATCCGCGCACTCACGAGCTGCTAGGCTTTGTACTGGT
AAGAAAATTTGCTCTTCTGAGCCATCTTTTTAAAAATGGCATCCCTTAGC
AGTCCTTATCCTCAAACACGCCTTATGTTTGAAATAGGCTGGCGTGGCCA
TCGGCCTCATCATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCTTTC
GACTCTTCTGTACTGGGACCTATACACTGCAAGCCATTGCAGTCAGAAAG
CGATCGAAAAAGATTTCAAAGACTTGGGGACAagccggaggagatggatg
tAAATGTAGATTGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCAATT
ACGTCAAAGATGTGGAATTATGACTCCAGCGGAGACAGCTGTGACATTTT
CCCAAGCAAGATTTCAAGCATCCGCCACGACTGCACCGTTGACAGGGTTA
AGAGtcatttttctcccctctcgaCCACCCGGAAATCTCGCTGCAATGGA
CAAGAACAGCAAGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCGGGA
AGACCGCGTGTGGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGAGCA
CGCTGGGTTTATCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAGGTA
TCGCAGGCAGAATTCGAGGTCCCACCGGGAACAGGTACCGAGACACTCCC
AAAGGGTAAGCACCACTTTATAATGAGTGATAGTCTTAATTATTTGCCTT
GAAAGATACGCATACGACTCTTTATTCTTACACTGGAAAGACACAGGAGT
TATCGTCGACCCTATGGGCATGTCAAGTAAGTTTTTATCTGTTTCAACTG
GTCTCTCTTGAGCCATTCCGAGTACGTTATATCGGTtgctttaaaaaaaa
tgcttactttctcttcctttgcaCCACTAAACTTAGTGCGAGTGAACCTA
GCCTTCTATCTGATTGCTTTCGGCGCCTTGGTATATTTCGTCGACATGGA
CTATGGTTATGCAGCCACATGCCTGTTCACTCGATGGTTTCCGAAAGAGG
CAGAAGTATTAGGGTTCAAACCGGTTAGTGATTAAGCATGACTGAGACAG
CTTCCATGTGATTTGTACAAGGGAACTAGTTAAATCCAAGCAGTCTGAGG
TTTATGTGAATAGATACGCACGTGTTTGTAAATGTGGATTGTGTACATGC
AAAGGTAATGAAAGCTAAAATGCATGGATTGAAGGCATAGATGGACATCT
TTCCTACGTTGGCAAGGACTTTAAGTTAAGATGCTGAGTAAACCATACCT
GGGAGAGTTCCGGGAATCGCCAGATTTGTGACAAACGTGTGGAAGAAAAA
CGAAATGAATGTCTTTCTCAAATACC

Coding sequence (CDS) from alignment at CM002458.1:309892..311467+

>rna1860 ID=rna1860|Name=rna1860|organism=Nannochloropsis gaditana|type=CDS|length=3948bp|location=Sequence derived from alignment at CM002458.1:309892..311467+ (Nannochloropsis gaditana)
ATGAAAAGCTCGCCTGCCTGGTTCTTATATACAGGCATACCCGTCATCAT
TGACATAAGAACTGACAGAACGCCTACAACGGTCGAAGCCACGTTCGCTC
CTGCGCACTCTCTTTTAAGAGCGCCGACTCACTTTATCAACATGACCCGT
AATGTTCCGCCCCTCTTCAATTTCGACTTCCCGTCCTGCGAGTATATCAC
GCAACATCCGCGCACTCACGAGCTGCTAGGCTTTGTACTGGCTGGCGTGG
CCATCGGCCTCATCATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCT
TTCGACTCTTCTGTACTGGGACCTATACACTGCAAGCCATTGCAGTCAGA
AAGCGATCGAAAAAGATTTCAAAGACTTGGGGACAagccggaggagatgg
atgtAAATGTAGATTGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCA
ATTACGTCAAAGATGTGGAATTATGACTCCAGCGGAGACAGCTGTGACAT
TTTCCCAAGCAAGATTTCAAGCATCCGCCACGACTGCACCGTTGACAGGG
TTAAGAGtcatttttctcccctctcgaCCACCCGGAAATCTCGCTGCAAT
GGACAAGAACAGCAAGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCG
GGAAGACCGCGTGTGGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGA
GCACGCTGGGTTTATCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAG
GTATCGCAGGCAGAATTCGAGGTCCCACCGGGAACAGGTACCGAGACACT
CCCAAAGGGAGTTATCGTCGACCCTATGGGCATGTCAATGCGAGTGAACC
TAGCCTTCTATCTGATTGCTTTCGGCGCCTTGGTATATTTCGTCGACATG
GACTATGGTTATGCAGCCACATGCCTGTTCACTCGATGGTTTCCGAAAGA
GGCAGAAGTATTAGGGTTCAAACCGGTTAGTGATTAAATGAAAAGCTCGC
CTGCCTGGTTCTTATATACAGGCATACCCGTCATCATTGACATAAGAACT
GACAGAACGCCTACAACGGTCGAAGCCACGTTCGCTCCTGCGCACTCTCT
TTTAAGAGCGCCGACTCACTTTATCAACATGACCCGTAATGTTCCGCCCC
TCTTCAATTTCGACTTCCCGTCCTGCGAGTATATCACGCAACATCCGCGC
ACTCACGAGCTGCTAGGCTTTGTACTGGCTGGCGTGGCCATCGGCCTCAT
CATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCTTTCGACTCTTCTG
TACTGGGACCTATACACTGCAAGCCATTGCAGTCAGAAAGCGATCGAAAA
AGATTTCAAAGACTTGGGGACAagccggaggagatggatgtAAATGTAGA
TTGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCAATTACGTCAAAGA
TGTGGAATTATGACTCCAGCGGAGACAGCTGTGACATTTTCCCAAGCAAG
ATTTCAAGCATCCGCCACGACTGCACCGTTGACAGGGTTAAGAGtcattt
ttctcccctctcgaCCACCCGGAAATCTCGCTGCAATGGACAAGAACAGC
AAGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCGGGAAGACCGCGTG
TGGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGAGCACGCTGGGTTT
ATCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAGGTATCGCAGGCAG
AATTCGAGGTCCCACCGGGAACAGGTACCGAGACACTCCCAAAGGGAGTT
ATCGTCGACCCTATGGGCATGTCAATGCGAGTGAACCTAGCCTTCTATCT
GATTGCTTTCGGCGCCTTGGTATATTTCGTCGACATGGACTATGGTTATG
CAGCCACATGCCTGTTCACTCGATGGTTTCCGAAAGAGGCAGAAGTATTA
GGGTTCAAACCGGTTAGTGATTAAATGAAAAGCTCGCCTGCCTGGTTCTT
ATATACAGGCATACCCGTCATCATTGACATAAGAACTGACAGAACGCCTA
CAACGGTCGAAGCCACGTTCGCTCCTGCGCACTCTCTTTTAAGAGCGCCG
ACTCACTTTATCAACATGACCCGTAATGTTCCGCCCCTCTTCAATTTCGA
CTTCCCGTCCTGCGAGTATATCACGCAACATCCGCGCACTCACGAGCTGC
TAGGCTTTGTACTGGCTGGCGTGGCCATCGGCCTCATCATTATAACAGTC
CTAACCGTGTATCCGGGAGAGCCTTTCGACTCTTCTGTACTGGGACCTAT
ACACTGCAAGCCATTGCAGTCAGAAAGCGATCGAAAAAGATTTCAAAGAC
TTGGGGACAagccggaggagatggatgtAAATGTAGATTGTAGGCGTACC
AGCACTTGTTCGGGGGCGCATGCAATTACGTCAAAGATGTGGAATTATGA
CTCCAGCGGAGACAGCTGTGACATTTTCCCAAGCAAGATTTCAAGCATCC
GCCACGACTGCACCGTTGACAGGGTTAAGAGtcatttttctcccctctcg
aCCACCCGGAAATCTCGCTGCAATGGACAAGAACAGCAAGCCCAGGCTGA
CGCACTCCACCGCCTTTTGCTTCGGGAAGACCGCGTGTGGCAGCAATTTC
AACGCCTCCCTCGGACTTTTCAGAGCACGCTGGGTTTATCGGAATCTCAA
GTGCGTGCGGCGATCCGTCAAGAGGTATCGCAGGCAGAATTCGAGGTCCC
ACCGGGAACAGGTACCGAGACACTCCCAAAGGGAGTTATCGTCGACCCTA
TGGGCATGTCAATGCGAGTGAACCTAGCCTTCTATCTGATTGCTTTCGGC
GCCTTGGTATATTTCGTCGACATGGACTATGGTTATGCAGCCACATGCCT
GTTCACTCGATGGTTTCCGAAAGAGGCAGAAGTATTAGGGTTCAAACCGG
TTAGTGATTAAATGAAAAGCTCGCCTGCCTGGTTCTTATATACAGGCATA
CCCGTCATCATTGACATAAGAACTGACAGAACGCCTACAACGGTCGAAGC
CACGTTCGCTCCTGCGCACTCTCTTTTAAGAGCGCCGACTCACTTTATCA
ACATGACCCGTAATGTTCCGCCCCTCTTCAATTTCGACTTCCCGTCCTGC
GAGTATATCACGCAACATCCGCGCACTCACGAGCTGCTAGGCTTTGTACT
GGCTGGCGTGGCCATCGGCCTCATCATTATAACAGTCCTAACCGTGTATC
CGGGAGAGCCTTTCGACTCTTCTGTACTGGGACCTATACACTGCAAGCCA
TTGCAGTCAGAAAGCGATCGAAAAAGATTTCAAAGACTTGGGGACAagcc
ggaggagatggatgtAAATGTAGATTGTAGGCGTACCAGCACTTGTTCGG
GGGCGCATGCAATTACGTCAAAGATGTGGAATTATGACTCCAGCGGAGAC
AGCTGTGACATTTTCCCAAGCAAGATTTCAAGCATCCGCCACGACTGCAC
CGTTGACAGGGTTAAGAGtcatttttctcccctctcgaCCACCCGGAAAT
CTCGCTGCAATGGACAAGAACAGCAAGCCCAGGCTGACGCACTCCACCGC
CTTTTGCTTCGGGAAGACCGCGTGTGGCAGCAATTTCAACGCCTCCCTCG
GACTTTTCAGAGCACGCTGGGTTTATCGGAATCTCAAGTGCGTGCGGCGA
TCCGTCAAGAGGTATCGCAGGCAGAATTCGAGGTCCCACCGGGAACAGGT
ACCGAGACACTCCCAAAGGGAGTTATCGTCGACCCTATGGGCATGTCAAT
GCGAGTGAACCTAGCCTTCTATCTGATTGCTTTCGGCGCCTTGGTATATT
TCGTCGACATGGACTATGGTTATGCAGCCACATGCCTGTTCACTCGATGG
TTTCCGAAAGAGGCAGAAGTATTAGGGTTCAAACCGGTTAGTGATTAA

Synonyms

Publications