rna185, rna185 (mRNA) Nannochloropsis gaditana

Overview
Namerna185
Unique Namerna185
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1764
Alignment locationCM002455.1:484172..485670 +

Link to JBrowse

Properties
Property NameValue
ProductNAD(P)-binding domain protein
Orig transcript idgnl|cribi|Naga_100013g32.9820.mrna
Orig protein idgnl|cribi|Naga_100013g32.9820
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:484172..485670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g32gene176Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna185rna185-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30532.1cds185Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna185 ID=rna185|Name=rna185|organism=Nannochloropsis gaditana|type=mRNA|length=1764bp
TGGCCTCTTTTCTCTTGTGGCCTTGCCTCCTCTCTTCCACCTCCTGTGTG
CGTTATGGCACCGTGTCCTTTTTCTCTTTAATTCACTACCACCCACCTCG
AAAGCGATGCGTCCTCACCAACAATTACTCGGGGCACTCCCGTGCAAGAC
GCCCTCCCCGCATTGCGGGAAGCTCTCCGTGGTTGCTCGCACAAAATCCT
CACCCTTTCTCTTGCTTCCTTTCCCATAAAATGGGCACCACCAGTCGTCT
CCGCCTCTCATAGCAATGGCTGCCCGACAACTCTTTCTTCTAGCTCTTTT
ACCAGCAGTTGCCTTGTCTTTCATGGGCCATCCCCGCGTGTCAAGGGGGA
GCGTTCGCATGATGTCGGACCTGATGGATAAGCCCAAGATCAGCCCCGCC
GTGAGCACGCCCCCGGCGGGAGGGGAGCCGAAAAGCACTGCCTTGGTGCC
GGTGAACCCGCAGACCATCGAGACAAGCGCCGCCATCGTCGGTACCTCCG
CGGGCATCGTCTTCCTGGGGCCTGTGCTGGGCATCGTCCTTGGCCTTCTC
ACCAACTACGCGGCCAAGACTGACAACGATGTGGGGGAGGCGGCCCGTGG
GGTGGGGAAGACTGCTCTGGAGGTCTTCAATTACATCGTGAAGATCAACT
CCAAGTACCAAATCGGAACCAAGGTCTCGAATTCCGCCTCCTCCTTAGTC
TCCAAGCTGAAGGAGAACGATGGCGAGGACTCCGTGGTGGCCAAGCTGGA
GGAGACTTTTGAGTCAACCAAGACGAAGCTCTCGGACCTGGACCAAGAGT
ACGACCTGGTGAGCAAGGCTAAGAGCGCGGTGGGGCTGACGGTGGACTTC
TCAAACTCAGCGATCGACAAGGCTCTGGAGTTGAACGAGAAGTACTCCAT
CGTGGACAAGACGACGGACGCGGTGAAGAAGGCGGTGAACAAGGCCAAGG
AGTCCATCTGAGGGGGGCGGGTCGGAGGGGACTGAGGGAAGCAGGAGTGC
GCGGGGGGAGTGGCCTGGCGTAGCCGTGCGACAGAAAGGGGAGCCCGGAA
GGAGCTATTGGGCTGAGATGTCACAGTCGAAGGTGGACTGCGGGCGAACC
CTCAAATTATTAGTTAGGATAGCTGCGTCGGTGCTCACGTTTGGCTGCTC
TCGCCTTGCCTCCAGTTTTCACTCAGCCCATCCAGAGATATGCGTGTGAT
GTTGTCCGCCTTAAACGAATGTCTCTAGATCGTTGATGGTTTCTATGGAG
GAAGCTTTGCGTGATTTTACCCTTGAGGACGAGGGGAAACGAATAGGAGG
GCCCTTAGCTCCCGTCGGTCATGAGGGGACCGGCCTATTTTGTGAGGGGG
ACATCCTGGGGGAGATGCTCGTGGACATGAGCAAGAAAGTTGAGGTGTCG
AAGAATCGGGTGGGCTATCACGCATGAATCGATCGAGAAAGAGACTGGGC
AGCGAGCAAGCATTCGGTGTATTGATCTTTCTTTGAACAAAACCGGGAAC
AAGAAAAAAGAAAATTAACAGGGCGCCTTCTTAATTATCGAAATCATGAT
GGCTTTGATTTTGAAACATAATCTGGCGACTAGTCCATCCAACGACTCTA
ACAAAATCATCAGTTAGGGTTAGGGTTAACCCTAACAAAATCATCAAAAT
CACGCAATTCTTACAGCTCGCGCAAGATATCGTAGCACTCCAGTTGCTTC
TGGGTAGCTGATCCAAAATCACAAGTCTCTTTTCGTGTTTCCTCACTTAG
TCGCTGCGGCCTGT
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protein sequence of rna185

>rna185-protein ID=rna185-protein|Name=rna185|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MYCSRLLMRALAFFGGLALVSVLPTITQGYMLATSSGTCQGPTMSLGDSP
RKVLVTGAGGRTGTLVFQKLQAKTDFQPIGLVRSKKSASKLRKAAGATDE
QIVIGDVMDPATLSKALEGCDSLILCTSATPKILLFSVIKILFKKLLRRA
PGRPEFKFPPRGEPEEVDWLGAKNQVDAALAAGVKHFVFLGSMGGTQPDN
FLNSIGKRPDGSGGDILLWKRKAEKYLIQRANSHGMSYTIVHPGGLLDKP
GGQQELVFDVDDVLLQRTTRSIPREDVAEVCVQALLQSKAKNVALDVIAE
AVGTGTPTTDFSALFDSLQNRSCAGERGYNRTLVCIVSIFFASATKHDEQ
FYASLAT
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mRNA from alignment at CM002455.1:484172..485670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna185 ID=rna185|Name=rna185|organism=Nannochloropsis gaditana|type=mRNA|length=1499bp|location=Sequence derived from alignment at CM002455.1:484172..485670+ (Nannochloropsis gaditana)
ATGTACTGCTCCAGGTTGCTGATGCGTGCGCTCGCCTTTTTTGGGGGCTT AGCTCTTGTCTCAGGTAGGTCGACAGTGGTCAGAATGAGAATGGAACATG CACGCTGAGATTAACCGGAGTGTGGACCAACGGACACTTCGCTTCTAATA AGCGTATCCATCTGTCTTGCCTTCCAAATCCATTACTTGCGTGTCTCGTT GTGCTAGACGAAGCGTGTTTCGCCTTCTAAAATGGGCGCGTATTCGGCTC TCCTGACCTTGTAAAATGTGACATTTGCTGCGAAATACCCGCTGAGAACT CTAGAGCGGAAATTCGCATAGATTTGATAAATATTTAACCGATAATATTG CTCGTCCTGAACTCTACAGTTCTGCCAACTATTACGCAAGGCTACATGCT GGCTACTTCCTCTGGAACATGCCAGGGCCCCACCATGTCCCTAGGCGATA GCCCCAGGAAGGTCCTGGTAACGGGGGCTGGAGGCCGTACGGGGACACTT GTCTTCCAGAAACTGCAGGCTAAGACGGATTTTCAGCCTATTGGACTCGT CCGTTCAAAGAAGTCAGCGTCAAAACTGCGGAAAGCTGCAGGAGCCACCG ACGAACAAATCGTCATTGGTGACGTGATGGACCCGGCGACTCTGAGCAAA GCTTTGGAAGGTTGCGACTCTCTGATTCTATGCACAAGTGCCACACCCAA AATTCTACTCTTCAGTGTCATCAAAATCTTGTTTAAGAAGCTCCTGCGCA GGGCGCCAGGCCGGCCAGAGTTCAAGTTTCCCCCCCGGGGAGAACCCGAA GAGGTCGACTGGTTAGGCGCAAAGAATCAGGTGGACGCCGCGCTCGCAGC AGGCGTCAAACACTTTGTATTTCTGGGGTCCATGGGCGGGACCCAACCGG ACAATTTCTTGAACAGTATCGGAAAACGCCCTGACGGATCGGGGGGGGAC ATTTTGCTGTGGAAACGCAAGGCGGAGAAATATCTGATTCAACGGGCCAA TAGCCACGGGATGTCTTACACGATTGTGCACCCGGGGGGGCTGTTGGACA AGCCAGGAGGACAGCAGGAGCTCGTTTTTGACGTGGATGACGTGCTTTTG CAGCGTACGACGCGCTCGATTCCtcgggaggacgtggcggaggtaTGTGT CCAGGCATTGCTGCAGTCCAAGGCAAAAAATGTGGCCTTGGATGTCATTG CAGAGGCAGTTGGTACAGGAACACCTACTACAGATTTTTCGGCACTGTTT GATAGCTTGCAAAACCGAAGCTGCGCGTATGAGTCTCCTTGAGCGGTAGC ATTGATTCGGTGGAAGAGCTGTCGTGACGTTACATTTCGGGTgtaagagg ggaaaggggatatAACAGGACACTTGTATGCATAGTGAGTATCTTCTTCG CGTCTGCGACTAAGCATGATGAACAATTTGTCACGCAAGCCGGCGGACCG GACGTGAACCGTCAATCCTCCAAGAGAGTATGCTTCTTTGGCAACGTGA
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Coding sequence (CDS) from alignment at CM002455.1:484172..485670+

>rna185 ID=rna185|Name=rna185|organism=Nannochloropsis gaditana|type=CDS|length=4296bp|location=Sequence derived from alignment at CM002455.1:484172..485670+ (Nannochloropsis gaditana)
ATGTACTGCTCCAGGTTGCTGATGCGTGCGCTCGCCTTTTTTGGGGGCTT
AGCTCTTGTCTCAGTTCTGCCAACTATTACGCAAGGCTACATGCTGGCTA
CTTCCTCTGGAACATGCCAGGGCCCCACCATGTCCCTAGGCGATAGCCCC
AGGAAGGTCCTGGTAACGGGGGCTGGAGGCCGTACGGGGACACTTGTCTT
CCAGAAACTGCAGGCTAAGACGGATTTTCAGCCTATTGGACTCGTCCGTT
CAAAGAAGTCAGCGTCAAAACTGCGGAAAGCTGCAGGAGCCACCGACGAA
CAAATCGTCATTGGTGACGTGATGGACCCGGCGACTCTGAGCAAAGCTTT
GGAAGGTTGCGACTCTCTGATTCTATGCACAAGTGCCACACCCAAAATTC
TACTCTTCAGTGTCATCAAAATCTTGTTTAAGAAGCTCCTGCGCAGGGCG
CCAGGCCGGCCAGAGTTCAAGTTTCCCCCCCGGGGAGAACCCGAAGAGGT
CGACTGGTTAGGCGCAAAGAATCAGGTGGACGCCGCGCTCGCAGCAGGCG
TCAAACACTTTGTATTTCTGGGGTCCATGGGCGGGACCCAACCGGACAAT
TTCTTGAACAGTATCGGAAAACGCCCTGACGGATCGGGGGGGGACATTTT
GCTGTGGAAACGCAAGGCGGAGAAATATCTGATTCAACGGGCCAATAGCC
ACGGGATGTCTTACACGATTGTGCACCCGGGGGGGCTGTTGGACAAGCCA
GGAGGACAGCAGGAGCTCGTTTTTGACGTGGATGACGTGCTTTTGCAGCG
TACGACGCGCTCGATTCCtcgggaggacgtggcggaggtaTGTGTCCAGG
CATTGCTGCAGTCCAAGGCAAAAAATGTGGCCTTGGATGTCATTGCAGAG
GCAGTTGGTACAGGAACACCTACTACAGATTTTTCGGCACTGTTTGATAG
CTTGCAAAACCGAAGCTGCGCaggggaaaggggatatAACAGGACACTTG
TATGCATAGTGAGTATCTTCTTCGCGTCTGCGACTAAGCATGATGAACAA
TTTTATGCTTCTTTGGCAACGTGAATGTACTGCTCCAGGTTGCTGATGCG
TGCGCTCGCCTTTTTTGGGGGCTTAGCTCTTGTCTCAGTTCTGCCAACTA
TTACGCAAGGCTACATGCTGGCTACTTCCTCTGGAACATGCCAGGGCCCC
ACCATGTCCCTAGGCGATAGCCCCAGGAAGGTCCTGGTAACGGGGGCTGG
AGGCCGTACGGGGACACTTGTCTTCCAGAAACTGCAGGCTAAGACGGATT
TTCAGCCTATTGGACTCGTCCGTTCAAAGAAGTCAGCGTCAAAACTGCGG
AAAGCTGCAGGAGCCACCGACGAACAAATCGTCATTGGTGACGTGATGGA
CCCGGCGACTCTGAGCAAAGCTTTGGAAGGTTGCGACTCTCTGATTCTAT
GCACAAGTGCCACACCCAAAATTCTACTCTTCAGTGTCATCAAAATCTTG
TTTAAGAAGCTCCTGCGCAGGGCGCCAGGCCGGCCAGAGTTCAAGTTTCC
CCCCCGGGGAGAACCCGAAGAGGTCGACTGGTTAGGCGCAAAGAATCAGG
TGGACGCCGCGCTCGCAGCAGGCGTCAAACACTTTGTATTTCTGGGGTCC
ATGGGCGGGACCCAACCGGACAATTTCTTGAACAGTATCGGAAAACGCCC
TGACGGATCGGGGGGGGACATTTTGCTGTGGAAACGCAAGGCGGAGAAAT
ATCTGATTCAACGGGCCAATAGCCACGGGATGTCTTACACGATTGTGCAC
CCGGGGGGGCTGTTGGACAAGCCAGGAGGACAGCAGGAGCTCGTTTTTGA
CGTGGATGACGTGCTTTTGCAGCGTACGACGCGCTCGATTCCtcgggagg
acgtggcggaggtaTGTGTCCAGGCATTGCTGCAGTCCAAGGCAAAAAAT
GTGGCCTTGGATGTCATTGCAGAGGCAGTTGGTACAGGAACACCTACTAC
AGATTTTTCGGCACTGTTTGATAGCTTGCAAAACCGAAGCTGCGCagggg
aaaggggatatAACAGGACACTTGTATGCATAGTGAGTATCTTCTTCGCG
TCTGCGACTAAGCATGATGAACAATTTTATGCTTCTTTGGCAACGTGAAT
GTACTGCTCCAGGTTGCTGATGCGTGCGCTCGCCTTTTTTGGGGGCTTAG
CTCTTGTCTCAGTTCTGCCAACTATTACGCAAGGCTACATGCTGGCTACT
TCCTCTGGAACATGCCAGGGCCCCACCATGTCCCTAGGCGATAGCCCCAG
GAAGGTCCTGGTAACGGGGGCTGGAGGCCGTACGGGGACACTTGTCTTCC
AGAAACTGCAGGCTAAGACGGATTTTCAGCCTATTGGACTCGTCCGTTCA
AAGAAGTCAGCGTCAAAACTGCGGAAAGCTGCAGGAGCCACCGACGAACA
AATCGTCATTGGTGACGTGATGGACCCGGCGACTCTGAGCAAAGCTTTGG
AAGGTTGCGACTCTCTGATTCTATGCACAAGTGCCACACCCAAAATTCTA
CTCTTCAGTGTCATCAAAATCTTGTTTAAGAAGCTCCTGCGCAGGGCGCC
AGGCCGGCCAGAGTTCAAGTTTCCCCCCCGGGGAGAACCCGAAGAGGTCG
ACTGGTTAGGCGCAAAGAATCAGGTGGACGCCGCGCTCGCAGCAGGCGTC
AAACACTTTGTATTTCTGGGGTCCATGGGCGGGACCCAACCGGACAATTT
CTTGAACAGTATCGGAAAACGCCCTGACGGATCGGGGGGGGACATTTTGC
TGTGGAAACGCAAGGCGGAGAAATATCTGATTCAACGGGCCAATAGCCAC
GGGATGTCTTACACGATTGTGCACCCGGGGGGGCTGTTGGACAAGCCAGG
AGGACAGCAGGAGCTCGTTTTTGACGTGGATGACGTGCTTTTGCAGCGTA
CGACGCGCTCGATTCCtcgggaggacgtggcggaggtaTGTGTCCAGGCA
TTGCTGCAGTCCAAGGCAAAAAATGTGGCCTTGGATGTCATTGCAGAGGC
AGTTGGTACAGGAACACCTACTACAGATTTTTCGGCACTGTTTGATAGCT
TGCAAAACCGAAGCTGCGCaggggaaaggggatatAACAGGACACTTGTA
TGCATAGTGAGTATCTTCTTCGCGTCTGCGACTAAGCATGATGAACAATT
TTATGCTTCTTTGGCAACGTGAATGTACTGCTCCAGGTTGCTGATGCGTG
CGCTCGCCTTTTTTGGGGGCTTAGCTCTTGTCTCAGTTCTGCCAACTATT
ACGCAAGGCTACATGCTGGCTACTTCCTCTGGAACATGCCAGGGCCCCAC
CATGTCCCTAGGCGATAGCCCCAGGAAGGTCCTGGTAACGGGGGCTGGAG
GCCGTACGGGGACACTTGTCTTCCAGAAACTGCAGGCTAAGACGGATTTT
CAGCCTATTGGACTCGTCCGTTCAAAGAAGTCAGCGTCAAAACTGCGGAA
AGCTGCAGGAGCCACCGACGAACAAATCGTCATTGGTGACGTGATGGACC
CGGCGACTCTGAGCAAAGCTTTGGAAGGTTGCGACTCTCTGATTCTATGC
ACAAGTGCCACACCCAAAATTCTACTCTTCAGTGTCATCAAAATCTTGTT
TAAGAAGCTCCTGCGCAGGGCGCCAGGCCGGCCAGAGTTCAAGTTTCCCC
CCCGGGGAGAACCCGAAGAGGTCGACTGGTTAGGCGCAAAGAATCAGGTG
GACGCCGCGCTCGCAGCAGGCGTCAAACACTTTGTATTTCTGGGGTCCAT
GGGCGGGACCCAACCGGACAATTTCTTGAACAGTATCGGAAAACGCCCTG
ACGGATCGGGGGGGGACATTTTGCTGTGGAAACGCAAGGCGGAGAAATAT
CTGATTCAACGGGCCAATAGCCACGGGATGTCTTACACGATTGTGCACCC
GGGGGGGCTGTTGGACAAGCCAGGAGGACAGCAGGAGCTCGTTTTTGACG
TGGATGACGTGCTTTTGCAGCGTACGACGCGCTCGATTCCtcgggaggac
gtggcggaggtaTGTGTCCAGGCATTGCTGCAGTCCAAGGCAAAAAATGT
GGCCTTGGATGTCATTGCAGAGGCAGTTGGTACAGGAACACCTACTACAG
ATTTTTCGGCACTGTTTGATAGCTTGCAAAACCGAAGCTGCGCaggggaa
aggggatatAACAGGACACTTGTATGCATAGTGAGTATCTTCTTCGCGTC
TGCGACTAAGCATGATGAACAATTTTATGCTTCTTTGGCAACGTGA
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Synonyms
Publications