rna1840, rna1840 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1840
Unique Name	rna1840
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1824
Alignment location	CM002458.1:267640..269683 +

Link to JBrowse

Properties


Property Name	Value
Product	protein phosphatase 2c
Orig transcript id	gnl\|cribi\|Naga_100199g8.9701.mrna
Orig protein id	gnl\|cribi\|Naga_100199g8.9701
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:267640..269683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100199g8	gene1764	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1840	rna1840-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28831.1	cds1836	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:267640..269683+
coding sequence from alignment at CM002458.1:267640..269683+

mRNA sequence

>rna1840 ID=rna1840|Name=rna1840|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp
AGAGACAAGCCTGAAGCCAACCTCAACAAGCACCCCCCTGGGCCATGCAA
GGATGGTAATGGACCGAGACGGACACGCGTGCTTACACGTACGCTTCTAA
TCATGGACAGGGCTACAGGATAGCGAGCATGGGTTCTGTTCCTGCAATCA
ATCTGATCGCGTGGACGTGATTAGCCAGAGAGGATCTCTCTGCGGAAGGC
AGATTTTTAGGTAAGCTCAGGAAGGTGAAGTTGCGTCTGGCAGGGTTAGG
CTCCGGAAGACCATGATAAATCATCCAAACAGGCAACGGTGCTTTTCTGC
ACGCACCAACAGTTTTCCCCTTCTTCTTCGGGGGGCAAATTACTTTTTAC
AAGGGTCGTGCGGGATTTTAATCCCATCCTAGCGCAGATTCTCTTACATC
TCAACCACAAATTCATCCACTCTAGGAGTATGGGGGCGCACCAGGGATCT
CCCTCCCTCTCCGCGTCTACAATACCAGACGCGCCCTCACTTCCGTTCGG
ATCGCACGTCTTGGGCTTGCTCCTATGCTTTGCCATTCTCTACGTCGCCT
TACGCATCCTCTTCACCCTGGTGCATTCCCTCTTCCTCCGATCCAATCCC
GCCATGCCTGGCGCACCGACCGTTCCTCGCCTGAGCGGGGGCTGGCGAAG
CTGGTACTTGGCGGGTGCATGCGGGGCAAAAGCGAGCCCGCTGTCCTCCA
CTGCCGGGCATCCGGTCCCGTACTCCTCAAGCCCGACGGATGTGGAAAGA
CAACCCAATCAAGTGCACCTCCCTTGCTCCCATTGGGCCGAAACCGGGGG
CCGCCAGTACATGGAGGACCGGCTCAGCTTCCGAGGCCGCTTGGGCGGCA
GGGAGGATGCGAGCTTGTACGCTTGTTTCGATGGCCACGGGGGGGCACTT
GCCAGTGAATTCTGCGCCCAGGAATTACCGGGCTACCTGGTGGAAAGCGA
AAAAAATTGGGAAATGGCAACGAAATCAGCCTTAAAAGATGCGTTCGCAC
AAACCGATGCCGCTTTCGCGCAGGCTCTGGCAGGAACGGATCGATTGGAT
GGAACAACCGCGCTGGTCTCTGTCGTGGTAGGCGACAAGCTCTTTGTGGC
CAACGCAGGCGACTCCCGGGCCATACTCGTCCAGCGCGGCGCACGGGTGG
TGCCATTGTCCCGAGACCACAAGCCGTCCTTGCCGGACGAGCTGGAGCGG
ATTACGGGGCTGGGAGGGAAGGTGATCTTTTGGGGTCGATGGCGGGTGGA
GGGAGTCCTGGCTGTCTCCAGGGCGATAGGGGACGCGCATTTGAAGCCGT
ACGTGACGCCGGAGCCGGAGGTAACGGAGTGGGAGATCACTGAGAAGGAC
CACTTCCTAGTCGTGGCGAGCGATGGTTTATGGGATGTGCTCTCCAACGA
GATGGCGGCGCAAATCGTCACCAACCACGGACAAAACCTCGAGCAGGCAG
CGAAAAGGCTCTGCCGTGAGGCCTCTATGAACGGGTCGATGGATAATATC
AGTGCGATTGTGGTAGACCTGCGGGAGGTTCGGAGAAGACGCAGGGACAG
GGAAAGGTAGGCGGGCCGTGCAGTCACGAAGGGGGAAGCTACATGTCGGT
CGAGGAGGACGATAGGTAGAGGGCCGTGTGTAAAGCTGTGTACAGGCTGA
GTAGAGGAGAGGTCAAGACTGAATGACGACGAAAGGGGAGGATGGGGAGG
AAAGGGAGGTGGTTTGGAGGAGAATTTTGATTTATGCTATCTCTGCTTCC
CAGGACAGAGACCACGGGGTCGTGTGCTCTTGAACCTGAAAGAACAAATT
GTGCCCATGGGCTGAGGATGCTCC

protein sequence of rna1840

>rna1840-protein ID=rna1840-protein|Name=rna1840|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MGAHQGSPSLSASTIPDAPSLPFGSHVLGLLLCFAILYVALRILFTLVHS
LFLRSNPAMPGAPTVPRLSGGWRSWYLAGACGAKASPLSSTAGHPVPYSS
SPTDVERQPNQVHLPCSHWAETGGRQYMEDRLSFRGRLGGREDASLYACF
DGHGGALASEFCAQELPGYLVESEKNWEMATKSALKDAFAQTDAAFAQAL
AGTDRLDGTTALVSVVVGDKLFVANAGDSRAILVQRGARVVPLSRDHKPS
LPDELERITGLGGKVIFWGRWRVEGVLAVSRAIGDAHLKPYVTPEPEVTE
WEITEKDHFLVVASDGLWDVLSNEMAAQIVTNHGQNLEQAAKRLCREASM
NGSMDNISAIVVDLREVRRRRRDRER

mRNA from alignment at CM002458.1:267640..269683+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1840 ID=rna1840|Name=rna1840|organism=Nannochloropsis gaditana|type=mRNA|length=2044bp|location=Sequence derived from alignment at CM002458.1:267640..269683+ (Nannochloropsis gaditana)
AGAGACAAGCCTGAAGCCAACCTCAACAAGCACCCCCCTGGGCCATGCAA
GGATGGTAATGGACCGAGACGGACACGCGTGCTTACACGTACGCTTCTAA
TCATGGACAGGGCTACAGGATAGCGAGCATGGGTTCTGTTCCTGCAATCA
ATCTGATCGCGTGGACGTGATTAGCCAGAGAGGATCTCTCTGCGGAAGGC
AGATTTTTAGGTAAGCTCAGGAAGGTGAAGTTGCGTCTGGCAGGGTTAGG
CTCCGGAAGACCATGATAAATCATCCAAACAGGCAACGGTGCTTTTCTGC
ACGCACCAACagttttccccttcttcttcgggGGGCAAATTACTTTTTAC
AAGGGTCGTGCGGGATTTTAATCCCATCCTAGCGCAGATTCTCTTACATC
TCAACCACAAATTCATCCACTCTAGGAGTATGGGGGCGCACCAGggatct
ccctccctctccgcgtcTACAATACCAGACGCGCCCTCACTTCCGTTCGG
ATCGCACGTCTTGGGCTTGCTCCTATGCTTTGCCATTCTCTACGTCGCCT
TacgcatcctcttcaccctGGTgcattccctcttcctccgatcCAATCCC
GCCATGCCTGGCGCACCGACCGTTCCTCGCCTGAGCGGGGGCTGGCGAAG
CTGGTACTTGGCGGGTGCATGCGGGGCAAAAGCGAGCCCGCTGTCCTCCA
CTGCCGGGCATCCGGTCCCGTACTCCTCAAGCCCGACGGATGTGGAAAGA
CAACCCAATCAAGTGcacctcccttgctcccatTGGGCCGAAACCGGGGG
CCGCCAGTACATGGAGGACCGGCTCAGCTTCCGAGGCCGCTtgggcggca
gggaggatgcgaGCTTGTACGCTTGTTTCGATGGCCACGGGGGGGCACTT
GCCAGTGAATTCTGCGCCCAGGAATTACCGGGCTACCTGGTGGAAAGCGA
AAAAAATTGGGAAATGGCAACGAAATCAGCCTTAAAAGATGCGTTCGCAC
AAACCGATGCCGCTTTCGCGCAGGCTCTGGCAGGAACGGATCGATTGGAT
GGAACAACCGCGCTGGTCTCTGTCGTGGTAGGCGACAAGCTCTTTGTGGC
CAACGCAGGCGACTCCCGGGCCATACTCGTCCAGCGCGGCGCACGGGTGG
TGCCATTGTCCCGAGACCACAAGCCGTCCTTGCCGGACGAGCTGGAGCGG
ATTacggggctgggagggaaggtgatcTTTTGGGGTCGAtggcgggtgga
gggagtCCTGGCTGTCTCCAGGGCGATAGGGGACGCGCATTTGAAGCCGT
ACGTGACGCCGGAGCCGGAGGTAACGGAGTGGGAGATCACTGAGAAGGAC
CACTTCCTAGTCGTGGCGAGCGATGGTGCGTGCTTTGGTGGGGTGGGGTg
tggggcaggggagaggggttTGTGGCCGTGGGGCAGGGGGACGCTTTCCC
TTAGTCATGCATGCGAGGGTCGAAGGTAAGCTGATGTGCAGGTAGGCCTG
TGAAATACACATGCTTGTGAAGCGCGTCcggagaaagcggcggcgTCATG
CGCTTCAGAGACGTGGCTGAGACTGACACATTCCCCCCTGAACAGGTTTA
TGGGATGTGCTCTCCAACGAGATGGCGGCGCAAATCGTCACCAACCACGG
ACAAAACCTCGAGCAGGCAGCGAAAAGGCTCTGCCGTGAGGCCTCTATGA
ACGGGTCGATGGATAATATCAGTGCGATTGTGGTAGACCTGCGGGAGGTT
CGGAGAAGACGCAGGGACAGGGAAAGGTAGGCGGGCCGTGCAGTCACGAA
GGGGGAAGCTACATGtcggtcgaggaggacgatagGTAGAGGGCCGTGTG
TAAAGCTGTGTACAGGCTGAGTAGAGGAGAGGTCAAGACTGAATGACGAc
gaaaggggaggatggggaggaaagggaggtggttTGGAGGAGAATTTTGA
TTTATGCTATCTCTGCTTCCCAGGACAGAGACCACGGGGTCGTGTGCTCT
TGAACCTGAAAGAACAAATTGTGCCCATGGGCTGAGGATGCTCC

Coding sequence (CDS) from alignment at CM002458.1:267640..269683+

>rna1840 ID=rna1840|Name=rna1840|organism=Nannochloropsis gaditana|type=CDS|length=2262bp|location=Sequence derived from alignment at CM002458.1:267640..269683+ (Nannochloropsis gaditana)
ATGGGGGCGCACCAGggatctccctccctctccgcgtcTACAATACCAGA
CGCGCCCTCACTTCCGTTCGGATCGCACGTCTTGGGCTTGCTCCTATGCT
TTGCCATTCTCTACGTCGCCTTacgcatcctcttcaccctGGTgcattcc
ctcttcctccgatcCAATCCCGCCATGCCTGGCGCACCGACCGTTCCTCG
CCTGAGCGGGGGCTGGCGAAGCTGGTACTTGGCGGGTGCATGCGGGGCAA
AAGCGAGCCCGCTGTCCTCCACTGCCGGGCATCCGGTCCCGTACTCCTCA
AGCCCGACGGATGTGGAAAGACAACCCAATCAAGTGcacctcccttgctc
ccatTGGGCCGAAACCGGGGGCCGCCAGTACATGGAGGACCGGCTCAGCT
TCCGAGGCCGCTtgggcggcagggaggatgcgaGCTTGTACGCTTGTTTC
GATGGCCACGGGGGGGCACTTGCCAGTGAATTCTGCGCCCAGGAATTACC
GGGCTACCTGGTGGAAAGCGAAAAAAATTGGGAAATGGCAACGAAATCAG
CCTTAAAAGATGCGTTCGCACAAACCGATGCCGCTTTCGCGCAGGCTCTG
GCAGGAACGGATCGATTGGATGGAACAACCGCGCTGGTCTCTGTCGTGGT
AGGCGACAAGCTCTTTGTGGCCAACGCAGGCGACTCCCGGGCCATACTCG
TCCAGCGCGGCGCACGGGTGGTGCCATTGTCCCGAGACCACAAGCCGTCC
TTGCCGGACGAGCTGGAGCGGATTacggggctgggagggaaggtgatcTT
TTGGGGTCGAtggcgggtggagggagtCCTGGCTGTCTCCAGGGCGATAG
GGGACGCGCATTTGAAGCCGTACGTGACGCCGGAGCCGGAGGTAACGGAG
TGGGAGATCACTGAGAAGGACCACTTCCTAGTCGTGGCGAGCGATGGTTT
ATGGGATGTGCTCTCCAACGAGATGGCGGCGCAAATCGTCACCAACCACG
GACAAAACCTCGAGCAGGCAGCGAAAAGGCTCTGCCGTGAGGCCTCTATG
AACGGGTCGATGGATAATATCAGTGCGATTGTGGTAGACCTGCGGGAGGT
TCGGAGAAGACGCAGGGACAGGGAAAGGTAGATGGGGGCGCACCAGggat
ctccctccctctccgcgtcTACAATACCAGACGCGCCCTCACTTCCGTTC
GGATCGCACGTCTTGGGCTTGCTCCTATGCTTTGCCATTCTCTACGTCGC
CTTacgcatcctcttcaccctGGTgcattccctcttcctccgatcCAATC
CCGCCATGCCTGGCGCACCGACCGTTCCTCGCCTGAGCGGGGGCTGGCGA
AGCTGGTACTTGGCGGGTGCATGCGGGGCAAAAGCGAGCCCGCTGTCCTC
CACTGCCGGGCATCCGGTCCCGTACTCCTCAAGCCCGACGGATGTGGAAA
GACAACCCAATCAAGTGcacctcccttgctcccatTGGGCCGAAACCGGG
GGCCGCCAGTACATGGAGGACCGGCTCAGCTTCCGAGGCCGCTtgggcgg
cagggaggatgcgaGCTTGTACGCTTGTTTCGATGGCCACGGGGGGGCAC
TTGCCAGTGAATTCTGCGCCCAGGAATTACCGGGCTACCTGGTGGAAAGC
GAAAAAAATTGGGAAATGGCAACGAAATCAGCCTTAAAAGATGCGTTCGC
ACAAACCGATGCCGCTTTCGCGCAGGCTCTGGCAGGAACGGATCGATTGG
ATGGAACAACCGCGCTGGTCTCTGTCGTGGTAGGCGACAAGCTCTTTGTG
GCCAACGCAGGCGACTCCCGGGCCATACTCGTCCAGCGCGGCGCACGGGT
GGTGCCATTGTCCCGAGACCACAAGCCGTCCTTGCCGGACGAGCTGGAGC
GGATTacggggctgggagggaaggtgatcTTTTGGGGTCGAtggcgggtg
gagggagtCCTGGCTGTCTCCAGGGCGATAGGGGACGCGCATTTGAAGCC
GTACGTGACGCCGGAGCCGGAGGTAACGGAGTGGGAGATCACTGAGAAGG
ACCACTTCCTAGTCGTGGCGAGCGATGGTTTATGGGATGTGCTCTCCAAC
GAGATGGCGGCGCAAATCGTCACCAACCACGGACAAAACCTCGAGCAGGC
AGCGAAAAGGCTCTGCCGTGAGGCCTCTATGAACGGGTCGATGGATAATA
TCAGTGCGATTGTGGTAGACCTGCGGGAGGTTCGGAGAAGACGCAGGGAC
AGGGAAAGGTAG

Synonyms

Publications