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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100402g3.3857.mrna |
| Orig protein id | gnl|cribi|Naga_100402g3.3857 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:254418..258519 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1833 ID=rna1833|Name=rna1833|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp
CGTTCTTGGTTATAGGTTGAAAGTCTTGCCTCCGAGACCCTACATCTCTC
TTCACCGTTGTACTTAAATCCTCCTTCCTTCTGTTCGTGGCTACCGGTTG
AAAGCGTACATCGTCTTCACCCTTAGTTAGGACTCTTTTCGTTCAAGTCA
TGCGTTGGATTGTTCATGTGTTGCGTATACCTCCTAGCTCCTCACGACTC
CATTCCAACTCATTTTTGAATTTACAACCGCGTCCAGGCATGCGCTCTTT
TCAAGGCGTGGCCAGTCTGCAAGGGAAAAACTTTATGAACATCGACGAAC
TCACGGACGTCGAGCTCCGGGACCTCCTTTCCCTTTCTGCTCAATTGAAG
AAAGCCTATTCCTCGCCCAGTCCTCCCGTCCTTCCTCGGCCGTGCGAGGG
AAAAAGCGTCAGTATGATTTTCCAAAAACGCAGTACGCGTACACGCGTAT
CGACCGAGACAGGCATGGCTCTTCTGGGTGGCCACGCCTTGTTTCTGGGT
CCACAAGATGTACAGTTGGGCGTAAACGAGAGTATGCGGGACACGGCGAA
TGTGCTTTCCCGCTTCAATTCCCTTATCCTCGCCCGAGTGTTCGCCCACA
CGGACGTCCAGCTCCTCGCGAAACATTCCAGCGTCCCCGTCATCAATGCC
TTGTCCGATCTTTACCACCCTTTGCAGGCCCTGGCCGATCTCCTGACCCT
GGAGGAGCATTTTGGGAAGGGGAGTTTACAGGGGAAAGTTCTGACATGGG
TAGGTGACGGGAACAACGTCCTGCACGATCTGGCCATGGGCGCAGCTCGT
CTGGGTATGCACGTGCGGGTAGCCTGTCCCGTCGGCTACGAGCCCAACGG
CGAAATTATGCACCGGGTGGAGTGGCACGCCCAGCGGTCGGGGGGGTCGT
ATGTGATGGAAAGAGACCCGATGACGGCCGTCGCGGGCGCGCACGTGATC
GTGACGGACACCTGGGTGAGCATGGGCCAAGAGGAGGAGTACGAGAGGCG
GATGCGGGATTTTGAGGGCTTTCAGGTGACGAGACGCATGATGGAGCATG
GGGCCAAGGGGTCAAATGCCGGGCGGCCGGCCTGCGTGTTCTTGCACTGC
CTGCCCCGCCATCCCGAGGAGGTGACGGACGAGGTCTTTTACGACCCCGC
ACGGAGTTTGGTGTTCCCAGAGGCGGAAAACCGGATGTGGACGGTCATGG
CCGTCATGCTTTCGTTGGTGGGGGGGGGGGGAAGAGGGTGTGAGGTGGGA
GAGAGTCACAACGGTGGGGGGGGGAGAAGGAGTAGCTGACAGGCAAAGGG
CAAACAATGGCGGGGGACAATCCCAACTAAATGACCACAGCTCAAGGCAA
AACTTCAGGGCTTTTCTTGCTTGCGGCTGCCTCTCCTTTGGAAGAAACCG
GGCGTCTTGTCTAGTCAAAGTAGAAACTCTCCGGGCGGCGTTGC back to topprotein sequence of rna1833 >rna1833-protein ID=rna1833-protein|Name=rna1833|organism=Nannochloropsis gaditana|type=polypeptide|length=927bp
MAVFRPSLWFPYHVFRLFLFPFQQNLAAAFGLNDSPSMNMPFASSPYLGL
GLGHANNWKPGASSGPVLQQLPQPPPPTQGALQQQHHVSGHPVQYLHPAH
NGSNKEVPKLVLGMVHSPSAFLQSTLPLEAGTEGESVGQALGHAGRTRQS
QPQHPHCRQEQQQQQIQQPPPPPLPPPNEQRMLSRSTPAPLPLHGSTLLP
PPLNTPLMAECPPLRPDQQSLGAAYASMPPPVTVLKPATPAVEAAGTGTG
VELPAVSDQSPEEVLLNLRYSALPASKTDAGPKGEGEKGGQAGLGKEEDN
ARAMDEVKETAPTKAGNGHVNGHGNGHGSGKTTKGAPGSGKTSSGDCSSS
PEECLLYLAQSPAPAPNASSQMPPPPAKEPTSRFPPAGPPVSGTLRPPVS
LKNASGSIPKARQTHSALLRLIRAEKPMQEMRQGETDKGSGYREPTETSP
CAGSQVLMPSNNSDNGTFGSKEEAPKGSGGGLPGNSQVGTGEGGVRAPSA
SPYLPSPGSSPFWPHAAHLSNQSPSFSGAHALSSHPSHPFTAAQRPQLPG
QPMGPPASGVPSVYAPALPHPQQPQQLEDYRLQYLQQQQQQQRNHLKQQQ
PPLPPNPPAQDPRAPYYSMAHDSSQHSFSPFPLPAFSPSPPFPGAAVGSV
PSSPFDMMTWSPSPALSCRQLPPPPSAAAAVASQGLPPLPSTAHIPVQYY
DNGQPGPTGRVENGGSGEMQGTNSSHGWSQGGAKVKMSGANPYALSSSSS
SSSSSSPPSSSSSPSSLRPSLDTNRARGSVRMPAHRGGRRGVRGRGGDQR
SGRDGKSNMPHRLRELEAEVSNETGSVRRERLVCETLAQLLRAKETNEDS
EEGAMVLELQKQNAAIQALIYKVQAMKIGCREAAKNGRDPAAVLKITDEV
LSTLNLPPPTLPPNVVRIPSVEGNRRA back to topmRNA from alignment at CM002458.1:254418..258519+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1833 ID=rna1833|Name=rna1833|organism=Nannochloropsis gaditana|type=mRNA|length=4102bp|location=Sequence derived from alignment at CM002458.1:254418..258519+ (Nannochloropsis gaditana)
CGGGGGTCGGTGTGCATGGTTTTCACTGGTGGTGGCAAGGTGGTGGCGTC
TCGGCGTTCGAAGAGTACATGATCGAGAAAACAATTTCAGgctgcccgcc
tcccgccgtATTGGCCCTGGCAACCACGGTAATGAGAGCCTTGGGTGTAC
CTTTCTTCACGTGTACCGTGCACGAAGCCCTAGTCTCGTGTGCAGCGTAC
TATGTGTGGTTGCGCCTGCCGGGAGTTTCAAGATTTCGGGCGGGCGTCAC
ATTCCTAAGTATGCACGTTGCTTCATCCGAAGGGCAAAGTGACACAGAGA
GTCACGCCTGAACTTGTCCATGGCATGTCCCCCGCGTGCACTCAGTTCAG
CCCGACATCATTTCATCATGACATGTACAGACACGTCTGAGCTCTGACTT
GTGAGCGGGATAACGCTGTTTCGGTGGATATAGGAGCAACGCACGGGGAC
CCAAATAACTGTAGCCATAATCGGACATGCTATGACTTCTAACACTGCTA
TATCTTACCCCGgcacgaaggaggggtgtgGGAAAGTGGAAATATCGAAC
GGGAGCATACCATCGTGGCTTCCCTCACCGGTTAGTGCGTGGGTTTGCTG
GCATATGATAGCGCATGAGGAGAAATATGTTTTCGGGGGGAGAACGATAT
CAGGGTCTCTTTCTTGGGTCGCTCTTCGGTGTGCTCGGCAGATAGGAAGG
GTACTACGTCTGAGTGTGTCATGTTTAATTTTTCCCGCCCCACATGGCTG
TGTTCCGGCCTTCGTTGTGGTTTCCTTACCATGTCTTTCGACTTTTTCTG
TTTCCCTTCCAACAGAATTTGGCAGCTGCCTTCGGATTGAACGACTCGCC
GAGCATGAACATGCcttttgcctcctctccgtacTTAGGCCTCGGCCTGG
GCCATGCAAATAACTGGAAACCGGGTGCCTCGAGTGGCCCCGTCTTACAG
CAGCTAccgcagcccccccccccgacgcaGGGTGCgctccagcagcagca
ccacgtCTCCGGCCATCCGGTCCAATACCTGCACCCCGCCCACAACGGCA
GCAACAAGGAGGTGCCCAAGCTGGTTCTCGGCATGGTGCACAGCCCGTCT
GCTTTTCTGCAGAGCACGTTGCCACTCGAggccgggacggagggagagag
cgtggGGCAGGCACTGGGCCACGCCGGACGGACACGGCAGTCGCAGCCGC
AGCATCCGCACTGCCGCCAggaacaacagcagcaacaaatACAGCAacca
cccccaccccccttgcctccaccaAACGAGCAAAGGATGCTTTCCCGCTC
CACACCTGCACCCCTGCCACTGCATGGCAGCACATtattgccccccccct
tgaacACCCCGCTCATGGCGGAGTGCCCCCCGCTGCGCCCAGATCAGCAA
AGCCTCGGTGCGGCTTACGCCTCGATGCCTCCCCCCGTAACAGTCTTAAA
GCCGGCGACACCGGCAGTGGAAGCTGCGGGGACGGGGACCGGGGTCGAGC
TCCCTGCGGTCTCTGACCAGAGCCCGGAGGAGGTGCTCTTGAACCTCCGA
TATTCCGCCCTACCCGCCTCCAAAACGGACGCCGGAccgaaaggagaggg
cgagaaaggcgGCCAAGCGGGGctagggaaagaagaggacaatGCTCGAG
CCATGGACGAGGTCAAGGAAACGGCGCCGACAAAGGCCGGCAACGGCCAC
GTTAACGGCCACGGCAACGGCCACGGCAGCGGCAAAACCACCAAGGGCGC
CCCCGGAAGTGGGAAGACGAGCAGCGGAGACTGCTCTTCGTCACCCGAGG
AATGCCTTCTATACCTGGCGCaatcccctgcccccgctcCCAACGCGTCG
TCGCAgatgcctccccctccagctaAGGAGcccacctcccgctttcctcc
cgccggaCCTCCGGTCTCCGGCACCCTGCGTCCTCCTGTGTCGCTCAAGA
ATGCTTCGGGCTCGATACCCAAGGCGCGACAAACACACAGTGCCCTTCTG
CGCCTGATCCGTGCGGAGAAACCTATGCAGGAGATGAGGCAAGGGGAGAC
AGACAAGGGGTCGGGATATCGCGAGCCTACGGAAACCAGCCCGTGCGCAG
GGAGCCAGGTGCTGATGCCGTCGAATAACAGCGATAATGGCACCTTTGGA
AGCAAAGAGGAGGCTCCCAAGGGCTCAGGCGGGGGACTTCCGGGCAATTC
CCAGGTTggaacgggggagggtggggtccGCGCGCCGTCGGcctctccct
acctcccgAGCCCGGGGTCTAGTCCGTTTTGGCCGCATGCCGCTCACCTC
TCCAAccagtctccctccttctccgggGCCCACGCCCTCTCGAGCcaccc
ttctcatcccttcACGGCGGCGCAGCGGCCGCAGCTTCCAGGCCAGCCGA
TGGGCCCGCCTGCCTCGGGCGTCCCCTCTGTGTATGCCCCAGCCCTGCCC
CACCCACAACAGCCTCAGCAACTCGAGGACTATCGTCTTCAGTatttgca
gcagcagcaacagcaacagcggaACCACTTAAAACAGCAACagcccccgc
tcccccctaATCCGCCGGCGCAGGACCCGCGTGCGCCCTACTACTCCATG
GCCCATGATAGTTCCCAgcattccttctccccctttcccctcccggcctt
ctcgccctcccctcccttccccggtgCGGCCGTAGGAAGCGTTCCTTCGA
GCCCTTTTGACATGATGACGTggtccccctccccagcaCTCTCTTGCCGC
CAgctgccccctccaccttcggCGGCCGCGGCTGTCGCCTCGCagggcct
tccccccctcccgtccacaGCGCATATTCCGGTGCAATACTACGACAACG
GCCAGCCCGGGCCCACGGGCAGGGTAGAgaacggagggagcggggaaatG
CAGGGGACGAACAGCAGCCACGGGTGGAgtcagggaggggcgaaagTGAA
AATGTCCGGTGCCAACCCCTAtgccctgtcctcctcctcctcctcctctt
cttcctcctccccgccttcctcatcctcatccccttcctccctccgtccc
agcTTGGATACAAATCGGGCTCGGGGCTCTGTGAGAATGCCGGCACAtcg
gggggggcgccgtGGGGTGAGAGGTAGGGGTGGAGACCAACGGTCgggca
gggacgggaagAGTAACATGCCCCACCGCCTGCGGGAATTGGAGGCGGAA
GTGAGCAATGAGACGGGGTCCGTGCGTCGGGAGCGTTTGGTGTGCGAGAC
TTTGGCCCAGCTTTTGCGCGCGAAGGAGACCAACGAGGActcagaggaag
gggccatgGTCCTGGAGTTGCAGAAGCAAAACGCGGCCATTCAGGCTTTG
ATATACAAAGTGCAAGCCATGAAGATTGGCTGCCGAGAAGCTGCGAAAAA
TGGGAGGGATCCCGCTGCGGTGTTGAAAATCACCGACGAAGTTTTGTCCA
CACTCAATTTGCCACCGcctaccctcccccccaatgTGGTGCGTATCCCG
TCGGTCGAGGGGAACAGGCGGGCTTGAAATGGAaacggaaggcgggggag
ggagcacagTCACATGCCTCATACTGTTATGGCCCAAGAGGACTCTAGAC
GGGAGGATGGTATCTGCTCTGGCAGGGTGTCTATGATGTGGGATGTGAAT
ACATGGCTGCGGAAGGCAAAGCTATACAAATTTTGATTATGCGAGAGCTC
GGAATCTCCGGCGGGTATCGCACCAAATGTGGCATGTATGATATGTGCCC
GCATTCTATTTTCctcggaaggggaggactaGACACGTGTGTGGCCCTTG
AGCAAATTTGTATCATCTGATTGAAATGTAGGAAGAGTTATCAAGAAGGA
TCTTAGCTTGAACTCATTAAGGTAATGGGGTCAAAGTATGGCTTCGATGC
ATGGTCAAAGGCATAAAAATCTGGTGCATTCGATTCTTTTACCAATCCCC
CCGTTTTTACCCTCCTTGCACGTATgatttttattttctttccatCTCGA
ATTTCTCCTTTACGCACTCTTGTTTCCAATCACATGGCAATGTGCTTGAC
CATGGGCTCTACATGTTGGCTCCCTCAGATTTTCCATCGAAAGCGAATGT
GC back to topCoding sequence (CDS) from alignment at CM002458.1:254418..258519+ >rna1833 ID=rna1833|Name=rna1833|organism=Nannochloropsis gaditana|type=CDS|length=2784bp|location=Sequence derived from alignment at CM002458.1:254418..258519+ (Nannochloropsis gaditana)
ATGGCTGTGTTCCGGCCTTCGTTGTGGTTTCCTTACCATGTCTTTCGACT
TTTTCTGTTTCCCTTCCAACAGAATTTGGCAGCTGCCTTCGGATTGAACG
ACTCGCCGAGCATGAACATGCcttttgcctcctctccgtacTTAGGCCTC
GGCCTGGGCCATGCAAATAACTGGAAACCGGGTGCCTCGAGTGGCCCCGT
CTTACAGCAGCTAccgcagcccccccccccgacgcaGGGTGCgctccagc
agcagcaccacgtCTCCGGCCATCCGGTCCAATACCTGCACCCCGCCCAC
AACGGCAGCAACAAGGAGGTGCCCAAGCTGGTTCTCGGCATGGTGCACAG
CCCGTCTGCTTTTCTGCAGAGCACGTTGCCACTCGAggccgggacggagg
gagagagcgtggGGCAGGCACTGGGCCACGCCGGACGGACACGGCAGTCG
CAGCCGCAGCATCCGCACTGCCGCCAggaacaacagcagcaacaaatACA
GCAaccacccccaccccccttgcctccaccaAACGAGCAAAGGATGCTTT
CCCGCTCCACACCTGCACCCCTGCCACTGCATGGCAGCACATtattgccc
ccccccttgaacACCCCGCTCATGGCGGAGTGCCCCCCGCTGCGCCCAGA
TCAGCAAAGCCTCGGTGCGGCTTACGCCTCGATGCCTCCCCCCGTAACAG
TCTTAAAGCCGGCGACACCGGCAGTGGAAGCTGCGGGGACGGGGACCGGG
GTCGAGCTCCCTGCGGTCTCTGACCAGAGCCCGGAGGAGGTGCTCTTGAA
CCTCCGATATTCCGCCCTACCCGCCTCCAAAACGGACGCCGGAccgaaag
gagagggcgagaaaggcgGCCAAGCGGGGctagggaaagaagaggacaat
GCTCGAGCCATGGACGAGGTCAAGGAAACGGCGCCGACAAAGGCCGGCAA
CGGCCACGTTAACGGCCACGGCAACGGCCACGGCAGCGGCAAAACCACCA
AGGGCGCCCCCGGAAGTGGGAAGACGAGCAGCGGAGACTGCTCTTCGTCA
CCCGAGGAATGCCTTCTATACCTGGCGCaatcccctgcccccgctcCCAA
CGCGTCGTCGCAgatgcctccccctccagctaAGGAGcccacctcccgct
ttcctcccgccggaCCTCCGGTCTCCGGCACCCTGCGTCCTCCTGTGTCG
CTCAAGAATGCTTCGGGCTCGATACCCAAGGCGCGACAAACACACAGTGC
CCTTCTGCGCCTGATCCGTGCGGAGAAACCTATGCAGGAGATGAGGCAAG
GGGAGACAGACAAGGGGTCGGGATATCGCGAGCCTACGGAAACCAGCCCG
TGCGCAGGGAGCCAGGTGCTGATGCCGTCGAATAACAGCGATAATGGCAC
CTTTGGAAGCAAAGAGGAGGCTCCCAAGGGCTCAGGCGGGGGACTTCCGG
GCAATTCCCAGGTTggaacgggggagggtggggtccGCGCGCCGTCGGcc
tctccctacctcccgAGCCCGGGGTCTAGTCCGTTTTGGCCGCATGCCGC
TCACCTCTCCAAccagtctccctccttctccgggGCCCACGCCCTCTCGA
GCcacccttctcatcccttcACGGCGGCGCAGCGGCCGCAGCTTCCAGGC
CAGCCGATGGGCCCGCCTGCCTCGGGCGTCCCCTCTGTGTATGCCCCAGC
CCTGCCCCACCCACAACAGCCTCAGCAACTCGAGGACTATCGTCTTCAGT
atttgcagcagcagcaacagcaacagcggaACCACTTAAAACAGCAACag
cccccgctcccccctaATCCGCCGGCGCAGGACCCGCGTGCGCCCTACTA
CTCCATGGCCCATGATAGTTCCCAgcattccttctccccctttcccctcc
cggccttctcgccctcccctcccttccccggtgCGGCCGTAGGAAGCGTT
CCTTCGAGCCCTTTTGACATGATGACGTggtccccctccccagcaCTCTC
TTGCCGCCAgctgccccctccaccttcggCGGCCGCGGCTGTCGCCTCGC
agggccttccccccctcccgtccacaGCGCATATTCCGGTGCAATACTAC
GACAACGGCCAGCCCGGGCCCACGGGCAGGGTAGAgaacggagggagcgg
ggaaatGCAGGGGACGAACAGCAGCCACGGGTGGAgtcagggaggggcga
aagTGAAAATGTCCGGTGCCAACCCCTAtgccctgtcctcctcctcctcc
tcctcttcttcctcctccccgccttcctcatcctcatccccttcctccct
ccgtcccagcTTGGATACAAATCGGGCTCGGGGCTCTGTGAGAATGCCGG
CACAtcggggggggcgccgtGGGGTGAGAGGTAGGGGTGGAGACCAACGG
TCgggcagggacgggaagAGTAACATGCCCCACCGCCTGCGGGAATTGGA
GGCGGAAGTGAGCAATGAGACGGGGTCCGTGCGTCGGGAGCGTTTGGTGT
GCGAGACTTTGGCCCAGCTTTTGCGCGCGAAGGAGACCAACGAGGActca
gaggaaggggccatgGTCCTGGAGTTGCAGAAGCAAAACGCGGCCATTCA
GGCTTTGATATACAAAGTGCAAGCCATGAAGATTGGCTGCCGAGAAGCTG
CGAAAAATGGGAGGGATCCCGCTGCGGTGTTGAAAATCACCGACGAAGTT
TTGTCCACACTCAATTTGCCACCGcctaccctcccccccaatgTGGTGCG
TATCCCGTCGGTCGAGGGGAACAGGCGGGCTTGA back to top
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