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Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide repeat-containing protein |
| Orig transcript id | gnl|cribi|Naga_100133g17.1503.mrna |
| Orig protein id | gnl|cribi|Naga_100133g17.1503 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:242183..244878 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1826 ID=rna1826|Name=rna1826|organism=Nannochloropsis gaditana|type=mRNA|length=3048bp
AGAGCAAAAATGTACGGATTCCGATCCCAAGGTGAGAAAAAAAGGCGTTG
AAAAAAGACCAATGATACAGGTGGTCAGTGAGACGCGTTTAAGCGTGCGA
ATGACGCCTGCATGCGCACCAGTATAAATCAATACTGCCTTTCCGTCGCC
TGCCGTGGAAGAGAAGGTGCGAGGTGATTGGTAGCCTCGTCCAGGAAGGC
TTCGAAGGCGGCAGGCGGAAGATGTTGGTAATGATGCATACTGTAGATGG
CAGGAAAGGCGGGCTGTGCAAGATTCTTGTAGGCCCGATTTTTTTGAGTG
AAGCAGATAATTCGCATTCCTTAATGTTACCTGCATTCTTTTAGATCGAA
TATTGAGATCCAAAACTATAGAAGACGTGCGCCGCTGCGGGAGCAGTGAG
AACTTTGCGGTGCTGAGCATGATTCCTGTCTTACTGTATCTGGGCGCGAG
AAAGCGCATGAAATGAGACAAGGTGCAAGATCAATGCCGTCACCAGTTTA
TTACGTTCTGCACGCGGATATTCCATGCTGAAAGGGATTCAATCAAAATA
TAGCAGTCTAAGTAGAGTGCATGCTTGATGATGAGGGTAAGAATGACAGG
AATATCACGGATAAACGTCGGGCTGAGACTCGAAACCACCAAAACGTGAC
TCAAAAAATTGAGTGATAAAAAATACTCGGCTTGAAATGTATAGTGTATG
CCTCCGGAAGGAGGGGTAGTCGTATAAGTGGGCAGCTCCATGAATAGGCT
GGGTCGAACTTCGCGCAAAAAAAGGGAGAAGCTCGAAATCCGAATATAAT
TTTGAATTATTGGAGCCCAATAATAAAGGAGCCGAAGATTTCCCAATCCC
TCGTGCTGGTCAATGTCAAAACAGCCGCCCGGAAAGCCACTGCTGTGGGT
GGATGTATGGGTAAAGGATTGTGAAAAATTCAACGGCTGCGTGAGTAGAA
GCGAGTACCATTTTGATGCTAGAACGTACTGGCAAAAACTTGAATGGCAA
GGTGAAATACACCTCGCGCCCGAGCCAGCAGTGTCTGGTTGGGGGAGGGA
GGCCCCCGAACTGACGCTATCGAACTGGATTCGACTACGAAATGGGGGAT
AGTGGACAGATTGTGGTACGTATGACGGTCCTCGATTATGAAAGAGCCGC
TCTGTTTTTTAAATGATGTGATGTGCACATTTTGGTGGAGAGTCACATGT
TGCTAGTCGAAAAAGTGCTCTCTTATCCTAAGCTTTGTACCTGTGGCCTC
CATCTTCAAGCTAAATGGATTTGTCATCCAGATCGTTTTAGGGTAATCCT
ACTATATTCACTGCGCTAATTTACCGCTTCAAATCCTTTCACATTAATAG
TGACGACCACGACGCAATTTAGGCGTTTTCACAAGAAGCATGTGCAGTAG
TAATACTTTCCACCATCATGTGCACGACGATGAGCGAGTCGACCGTGCAA
GGGGCTTGCTCTGCGAAGGGGCCTCATTGCTCGTGCAGACTCAAGAGAGC
ACCGATATCATTGACTCCAGCCGACACCTTCAGCAATGTCTAGACAAATT
TGACTGTGCATTACGCCTCGCTCCACATCTGCGGGCTCATGCGTGGGAAA
GAGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAGCAGCTGACCAG
TTCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCTG
GCGCTCATTGTGCATCGCCAAGCTCCAAGGATGGAACACCGGCCTCGCAG
TCCTGGATCAGTTCCACGGGTACGACAACAGACTCTGCATGATGGAGGTG
CTTGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTCTTTGACTGTGC
CTGCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCT
TCTTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGTCTCTACCCTTG
CTGCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACCTACTTGCAGTC
CCTGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCTCCACTCTATCC
ATGCTCATGCCCAAGACGGGCGCCGTACCCCTCTCTCCTGTGGCTTCCCC
TCTTCTTCTACCGCGTCGACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCC
CACGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCGCAAGTATGATA
CTCCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGA
AGAGCCCTTGTAAAAAATAGTTGTTGAGGGATGGGACTGTCTGGGCATTT
GGCTCAGTGTGTTTTGAGGTGTCTTTTGGGGGATTGTGCGGGAGGTTGTA
GGGGAGACTCAAAAAATAGAGGGCGGAACATGCGTCCTAGACCAAAAAAA
TATGACAGGGTGACAGGTTGCTCTCCATTGAGTCGTGGACAAATTATGAA
ATATTCAATTCAAAATACGAGGGAAGCACATAGACAGTGAGGAGTATGAA
GAGAGAAAAATGAGGATGAAAGCAGAGTCAAAAAGAGTAAGACGTGTGCA
AGACTGCAGCTCCGTGCCTCTAGGCACTCAGCCTGACGTCGTAATGGAAA
GGCATTTCCATTCGTCATGGTAAACAAATCTTCATTGGAAGATCACAGTT
AGAAGTATGATATTGAAAAGAGTTACAGGCATTCTGCCCGTCTTCACATT
GAACCGGTGTGGTCGATAGTAGCGCGAGAATTGATTGACTTGGTTGCAGT
GACTTGGAGCACCTCGATGCGGCGCGTGTCGCATTTTCCACTCGGCCGTG
GAGGTATTCACGTGTTTTTTGAAAGGGTAGACTTTTTTGCGTGAGCACCG
GCATGTGCTCCGGGGGGGTAAAACTTGATGCTTAAGCGCCGTCGTGGCCC
CCCCAGATAACGATTAGCCTGGTAGCCCAGGTGTACATGTGGATGTATGC
CGGGGTATATCAGGGTGTACATGCATTGAAAAACGAATAGAAGATGATTT
GTCCGTCGAACAGCGAAGAAGACAAAAACTTCAGAAACGCAGAGCACT back to topprotein sequence of rna1826 >rna1826-protein ID=rna1826-protein|Name=rna1826|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQC
LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCE
PFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESV
FDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDT
YLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAA
LASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC back to topmRNA from alignment at CM002458.1:242183..244878+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1826 ID=rna1826|Name=rna1826|organism=Nannochloropsis gaditana|type=mRNA|length=2696bp|location=Sequence derived from alignment at CM002458.1:242183..244878+ (Nannochloropsis gaditana)
TTGGAGCCCAATAATAAAGGAGCCGAAGATTTCCCAATCCCTCGTGCTGG
TCAATGTCAAAACAGCCGCCCGGAAAGCCACTGCTGTGGGTGGATGTATG
GGTAAAGGATTGTGAAAAATTCAACGGCTGCGTGAGTAGAAGCGAGTACC
ATTTTGATGCTAGAACGTACTGGCAAAAACTTGAATGGCAAGGTGAAATA
CACCTCGCGCCCGAGCCAGCAGTGTCtggttgggggagggaggcccccGA
ACTGACGCTATCGAACTGGATTCGACTACGAAATGGGGGATAGTGGACAG
ATTGTGGTACGTATGACGGTCCTCGATTATGAAAGAGCCGCTCTGTTTTT
TAAATGATGTGATGTGCACATTTTGGTGGAGAGTCACATGTTGCTAGTCG
AAAAAGTGCTCTCTTATCCTAAGCTTTGTACCTGTGGCCTCCATCTTCAA
GCTAAATGGATTTGTCATCCAGATCGTTTTAGGGTAATCCTACTATATTC
ACTGCGCTAATTTACCGCTTCAAATCCTTTCACATTAATAGTGACGACCA
CGACGCAATTTAGGCGTTTTCACAAGAAGCATGTGCAGTAGTAATACTTT
CCACCATCATGTGCACGACGATGAGCGAGTCGACCGTGCAAGGGGCTTGC
TCTGCGAAGGGGCCTCATTGCTCGTGCAGACTCAAGAGAGCACCGATATC
ATTGACTCCAGCCGACACCTTCAGCAATGTCTAGACAAATTTGACTGTGC
ATTACGCCTCGCTCCACATCTGCGGGCTCATGCGGTAAGGGGTTGGGATG
TGTGGGCGCTTGAGGTATGAAGGTCGTGATGCTATGGTATCTAGCAATGT
GGACTAAAACCCGGCTATCTGTGCACGATGAAAGCTCGTAGAGGGTGGTC
CTCCGTCCTAGTTGGTAGTCTGACGAAATTCGATGTATTGTGCTATTGAA
ATACTACTTGACACTTTCTTCCTTAGAAGAAACAATCTGCACTCATTAGA
TTTGCCCAtggctttctcctctcctttccatcccttttcTCCAGTGGGAA
AGAGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAGCAGCTGACCA
GTTCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCT
GGCGCTCATTGGTGCGTTGTCAACGGAGGGCATTCGTATAGGTGAAAGTC
ATCGAGATACGTACGCCGAGGAAAATATCCAGGATTTTTCAGGGCATGAG
ATGCTTATTCCTGTAATACAATGCCCAAGAAAATTTTCTTACACATAACC
TGCGAGAGGTAACTAAACCGCCCCCATCAATCTGCATGCTCTCTCTTTCA
TTCGTCAGTGCATCGCCAAGCTCCAAGGATGGAACACCGGCCTCGCAGTC
CTGGATCAGTTCCACGGGTACGACAACAGACTCTGCATGATGGAGGTGCT
TGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTCTTTGACTGTGCCT
GCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCTTC
TTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGTCTCTACCCTTGCT
GCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACCTACTTGCAGTCCC
TGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCTCCACTCTATCCAT
GCTCATGCCCAAGACGGGCGCCGtacccctctctcctgtggcttcccctc
ttcttctacCGCGTCGACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCCCA
CGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCGCAAGTATGATACT
CCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGAAG
AGCCCTTGTAAAAAATAGTTGTTGAGGGATGGGACTGTCTGGGCATTTGG
CTCAGTGTGTTTTGAGGTGTCTTTTGGGGGATTGTGCGGGAGGTTGTAGG
GGAGACTCAAAAAATAGAGGGCGGAACATGCGTCCTAGACCAAAAAAATA
TGACAGGGTGACAGGTTGCTCTCCATTGAGTCGTGGACAAATTATGAAAT
ATTCAATTCAAAATACGAGGGAAGCACATAGACAGTGAGGAGTATGAAGA
GAGAAAAATGAGGATGAAAGCAGAGTCAAAAAGAGTAAGACGTGTGCAAG
ACTGCAGCTCCGTGCCTCTAGGCACTCAGCCTGACGTCGTAATGGAAAGG
CATTTCCATTCGTCATGGTAAACAAATCTTCATTGGAAGATCACAGTTAG
AAGTATGATATTGAAAAGAGTTACAGGCATTCTGCCCGTCTTCACATTGA
ACCGGTGTGGTCGATAGTAGCGCGAGAATTGATTGACTTGGTTGCAGTGA
CTTGGAGCACCTCGATGCGGCGCGTGTCGCATTTTCCACTCGGCCGTGGA
GGTATTCACGTGTTTTTTGAAAGGGTAGACTTTTTTGCGTGAGCACCGGC
ATGTGCTCCGGGGGGGTAAAACTTGATGCTTAAGCGCCGTCGTGGCCCCC
CCAGATAACGATTAGCCTGGTAGCCCAGGTGTACATGTGGATGTATGCCG
GGGTATATCAGGGTGTACATGCATTGAAAAACGAATAGAAGATGATTTGT
CCGTCGAACAGCGAAGAAGACAAAAACTTCAGAAACGCAGAGCACT back to topCoding sequence (CDS) from alignment at CM002458.1:242183..244878+ >rna1826 ID=rna1826|Name=rna1826|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at CM002458.1:242183..244878+ (Nannochloropsis gaditana)
ATGTGCAGTAGTAATACTTTCCACCATCATGTGCACGACGATGAGCGAGT
CGACCGTGCAAGGGGCTTGCTCTGCGAAGGGGCCTCATTGCTCGTGCAGA
CTCAAGAGAGCACCGATATCATTGACTCCAGCCGACACCTTCAGCAATGT
CTAGACAAATTTGACTGTGCATTACGCCTCGCTCCACATCTGCGGGCTCA
TGCGTGGGAAAGAGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAG
CAGCTGACCAGTTCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAG
CCCTTTCTCTGGCGCTCATTGTGCATCGCCAAGCTCCAAGGATGGAACAC
CGGCCTCGCAGTCCTGGATCAGTTCCACGGGTACGACAACAGACTCTGCA
TGATGGAGGTGCTTGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTC
TTTGACTGTGCCTGCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGC
GTGCGCGCTCTTCTTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGT
CTCTACCCTTGCTGCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACC
TACTTGCAGTCCCTGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCT
CCACTCTATCCATGCTCATGCCCAAGACGGGCGCCGtacccctctctcct
gtggcttcccctcttcttctacCGCGTCGACCGTCTCCTCTCCAGCAGCG
TTGGCTTCGCCCACGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCG
CAAGTATGATACTCCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAG
CCGTTCTTAGAAGAGCCCTTGTAAAAAATAGTTGTTGAATGTGCAGTAGT
AATACTTTCCACCATCATGTGCACGACGATGAGCGAGTCGACCGTGCAAG
GGGCTTGCTCTGCGAAGGGGCCTCATTGCTCGTGCAGACTCAAGAGAGCA
CCGATATCATTGACTCCAGCCGACACCTTCAGCAATGTCTAGACAAATTT
GACTGTGCATTACGCCTCGCTCCACATCTGCGGGCTCATGCGTGGGAAAG
AGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAGCAGCTGACCAGT
TCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCTGG
CGCTCATTGTGCATCGCCAAGCTCCAAGGATGGAACACCGGCCTCGCAGT
CCTGGATCAGTTCCACGGGTACGACAACAGACTCTGCATGATGGAGGTGC
TTGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTCTTTGACTGTGCC
TGCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCTT
CTTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGTCTCTACCCTTGC
TGCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACCTACTTGCAGTCC
CTGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCTCCACTCTATCCA
TGCTCATGCCCAAGACGGGCGCCGtacccctctctcctgtggcttcccct
cttcttctacCGCGTCGACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCCC
ACGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCGCAAGTATGATAC
TCCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGAA
GAGCCCTTGTAAAAAATAGTTGTTGAATGTGCAGTAGTAATACTTTCCAC
CATCATGTGCACGACGATGAGCGAGTCGACCGTGCAAGGGGCTTGCTCTG
CGAAGGGGCCTCATTGCTCGTGCAGACTCAAGAGAGCACCGATATCATTG
ACTCCAGCCGACACCTTCAGCAATGTCTAGACAAATTTGACTGTGCATTA
CGCCTCGCTCCACATCTGCGGGCTCATGCGTGGGAAAGAGGTTTCGTCCT
CCTATATTTGAATCGCATTAAAGAAGCAGCTGACCAGTTCGCCTATTGCA
CGTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCTGGCGCTCATTGTGC
ATCGCCAAGCTCCAAGGATGGAACACCGGCCTCGCAGTCCTGGATCAGTT
CCACGGGTACGACAACAGACTCTGCATGATGGAGGTGCTTGCTCTGTATA
AGGGAAAGACAAATTTGGAGAGCGTCTTTGACTGTGCCTGCGGGGACCCA
CACTCCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCTTCTTCGAGGCGCA
TGGGACGAGGGCAGCAGAAAAAATGTCTCTACCCTTGCTGCACGCGGTGG
CCACAGTCCACTGTGGGGGCGACACCTACTTGCAGTCCCTGGCCCGCATC
CACATGCGTCACGTCCAGGATAGCCTCCACTCTATCCATGCTCATGCCCA
AGACGGGCGCCGtacccctctctcctgtggcttcccctcttcttctacCG
CGTCGACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCCCACGGCTCTCAGC
ACAGAGATTGCCGACGAGAAAGGGCGCAAGTATGATACTCCCTCCGTGCC
GCTCTGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGAAGAGCCCTTGTAA
AAAATAGTTGTTGA back to top
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