rna1811, rna1811 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1811
Unique Name	rna1811
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	237
Alignment location	CM002458.1:207963..210539 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100133g2.1517.mrna
Orig protein id	gnl\|cribi\|Naga_100133g2.1517
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:207963..210539 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100133g2	gene1740	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1811	rna1811-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28863.1	cds1807	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:207963..210539-
coding sequence from alignment at CM002458.1:207963..210539-

mRNA sequence

>rna1811 ID=rna1811|Name=rna1811|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGGAAGGTGGGAGGGGGGAGGGGGGGCATGCGGTGTACGTAGATGGGGG
TTCCAGCCGTGGGAGAGTTTTGGGAGGGCTGGGAAAGGAGGCGGGCCGTC
TAGCCTCATCCTCCCGTCTCCCGTTGTCCGTAATGCAGGGCGTGACTGAA
ATGGGGGTGTCCGAGGTAAAGCATGGCCGGGAGGGGGACGCAAGGGGAAA
AGGAGGATGCAAGGGAGAAGGTTGGGTACTATCGTAG

protein sequence of rna1811

>rna1811-protein ID=rna1811-protein|Name=rna1811|organism=Nannochloropsis gaditana|type=polypeptide|length=592bp
MASISCIRQSLELENFEQGAPVIDRAATTSPATILDDLSIPDGLDPPPVA
YKGCGNDGCAEVVDASFPAYDHLCFRVHRSSHSRSPGFDPASEKSPSLVP
GAATASGVVREVVISPWKQGGGGRKSPHVASHEEMPVGRRLSVTGEQGDG
PETPSDRHGKEDKVACFRATSQDPMETSITGAACPLRSQQPPLRQQGEEG
GKEEEEGRGGAGEARYGQRPSQRQHGQREGEEEEEEGRRGDAPRPLRQAD
GAAEKGEEEGSIQVSTEVQRRLPPSREGGKEGREGEEKASRERKTLQAVA
RLDLDDQASPLWLPESMARSTPSSSLSSSSSSSSILRKQSAFLPPSPGLS
CSPSSNGKKGIRFADAMGQALAAVRYSQRLQYSPTAVPQRWEEGGREEGW
EEVTEEEEEWNVEWMGEEDGEEEEEGEQEGWWTLWPSELSAFKRRQMAAA
RRRRRLRKELRRRAEEEREQAQRKAQEGKAVELKEDLAGGRGAEKYRRYT
EAKRSRIPLPPSPPTSPRTVGARLVRGKASKGSKVGLAPWWEGGKGEEDG
EKGRAGRWEGAGRSAREGKREMGEREGEKAARDVQAQCCVVS

mRNA from alignment at CM002458.1:207963..210539-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1811 ID=rna1811|Name=rna1811|organism=Nannochloropsis gaditana|type=mRNA|length=2577bp|location=Sequence derived from alignment at CM002458.1:207963..210539- (Nannochloropsis gaditana)
GGGAAGCCAATATTTGGTCCACGTGGGCACTGGCAAAATGCAAGCATTTA
TACCTGTGGCACCACGCACGGGCATGGAAATATGACAGGGCTGTTATCTA
AATGCTGCAGAGGCACTTTTTGTGGCACGGAATAGTTCGGGCCCAGTATA
TGTTTCGTGTGTAATTTCAATACGCATTAGTTTTCGACCATCGAAACAGG
GAAGCGAGTGGGCGCTTTCCGTGAGGTCATGGCGTCCATATCTTGCATTA
GGCAGTCTCTAGAGCTTGAAAACTTTGAGCAAGGGGCTCCGGTAATAGAT
CGGGCCGCGACTACAAGCCCTGCCACGGTAAGCCTTGATATGAGGGTGTT
GGAGCACAGAGCCGGGATGGCATCTATTTTGGGAAATTTTTAAGAAGTAC
CACACTCCTTGGATCCGCCCGGGTGTTTTTACGCGTGCTTGATTTCCTGG
GTGAGGTGGATCATTCTCTGTTCTGTCATTACCCTGCGCCGCGTGGCAGA
CATTGGCTTTGACGCGACGAGTCCCCCACCTCCTTGCACCCAGATCTTGG
ATGACCTGTCGATCCCAGACGGGCTGGATCCACCACCTGTCGCGTACAAG
GGCTGCGGAAACGACGGGTGTGCAGAAGTTGTGGACGCTAGCTTTCCTGC
CTACGACCACCTCTGTTTTAGAGTTCATCGGAGCAGTCACAGCAGGAGTC
CTGGCTTCGACCCCGCCTCGGAGAAAAGCCCCAGCCTTGTTCCCGGTGCC
GCCACGGCGTCGGGGGTGGTGCGGGAGGTGGTTATAAGCCCGTGGAAACA
GGGAGGTGGGGGCAGGAAGAGCCCGCACGTGGCGTCCCATGAGGAGATGC
CCGTGGGGCGCAGGCTCTCAGTGACAGGCGAGCAGGGGGACGGCCCTGAA
ACTCCCTCTGACAGGCATGGCAAAGAGGACAAGGTAGCCTGCTTCCGTGC
GACGAGCCAGGATCCAATGGAGACGTCCATAACCGGGGCCGCATGTCCAC
TGCGGAGCCAGCAGCCGCCTCTCCGGCAGCAGGGAGAGGAAGGGGGGAAG
GAGGAGGAGGAAGGGCGAGGGGGTGCAGGCGAGGCGCGGTACGGGCAAAG
GCCATCGCAGAGGCAGCACGGCCAGAGGGAAGGGGAGGAGGAGGAGGAGG
AGGGAAGACGAGGAGACGCTCCGCGGCCGTTGCGGCAGGCGGATGGGGCC
GCAGAAAAGGGGGAAGAGGAGGGGTCGATTCAGGTCTCGACGGAGGTGCA
GCGTCGCCTCCCCCCCAGCCGGGAGGGAGGGAAGGAAGGGAGAGAAGGGG
AAGAGAAAGCGAGCAGGGAGAGGAAAACCCTCCAAGCCGTGGCCCGTTTG
GACCTGGACGACCAGGCCTCCCCCCTGTGGCTCCCCGAGAGCATGGCTCG
GAGCACGCCCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCATCC
TACGGAAGCAAAGTGCCTTCCTCCCTCCCTCCCCCGGCCTCTCATGCTCC
CCGTCCAGCAACGGCAAAAAGGGCATCCGTTTTGCGGATGCGATGGGGCA
GGCCCTGGCGGCGGTCCGTTACTCGCAACGGTTGCAATATAGCCCAACGG
CCGTCCCTCAGCGGTGGGAGGAGGGAGGGAGGGAGGAAGGGTGGGAAGAG
GTGACAGAGGAGGAGGAAGAGTGGAACGTGGAGTGGATGGGGGAGGAGGA
CGGGGAGGAGGAGGAGGAGGGGGAGCAGGAGGGCTGGTGGACCCTGTGGC
CAAGCGAGCTCTCGGCATTTAAACGGCGGCAAATGGCGGCGGCCCGGCGT
CGCCGACGGCTCCGGAAAGAGCTGCGGAGGCGGGCCGAAGAGGAGAGAGA
ACAGGCCCAGCGAAAGGCGCAGGAGGGGAAGGCGGTGGAGTTGAAGGAGG
ATCTTGCGGGGGGCCGCGGGGCCGAAAAATACCGAAGGTACACGGAGGCG
AAACGGAGCCGGATCCCCCTGCCTCCCTCCCCCCCCACCTCTCCCCGTAC
GGTGGGCGCTCGGTTGGTCCGAGGGAAAGCTAGCAAAGGGAGTAAGGTGG
GACTGGCGCCGTGGTGGGAGGGAGGAAAGGGGGAGGAGGACGGGGAGAAG
GGGAGGGCGGGTCGGTGGGAGGGAGCCGGGAGAAGCGCGAGGGAGGGGAA
GAGAGAGATGGGGGAGAGGGAGGGAGAAAAGGCGGCCAGGGATGTCCAAG
CCCAGTGCTGTGTGGTCTCGTAAAGGGGAAGACAGGACGGGGCCGGTGCG
CAGTCGCCGCCTGGGGAGGCGAGAAGGGAAGCTTCTCGATGTTTCTAGAT
GTTTTCACGCACGTCGCTGGTGGGAGAAGCTTCTACACGTTTCTACACGC
GTGGCTGCTGCGGGCCGCGTCGCGGAGGGGGTATGAGGAGGAAGGAGGAG
GGGGAAGAAGGTCGGTCTCGCGTGATGGCTCTCTCTCGAACTGCATATTT
GTAGGTAATGACGTCACCGCGCAACGCTTGCTTGTAATACACGTAACGAT
ATAATTCCAGCGACAAGTTGGAGGAAACAGGCATGACATGCCTTTTCTAG
GAAGAAAAACATTTGATTGACGACAGA

Coding sequence (CDS) from alignment at CM002458.1:207963..210539-

>rna1811 ID=rna1811|Name=rna1811|organism=Nannochloropsis gaditana|type=CDS|length=3558bp|location=Sequence derived from alignment at CM002458.1:207963..210539- (Nannochloropsis gaditana)
ATCTTGGATGACCTGTCGATCCCAGACGGGCTGGATCCACCACCTGTCGC
GTACAAGGGCTGCGGAAACGACGGGTGTGCAGAAGTTGTGGACGCTAGCT
TTCCTGCCTACGACCACCTCTGTTTTAGAGTTCATCGGAGCAGTCACAGC
AGGAGTCCTGGCTTCGACCCCGCCTCGGAGAAAAGCCCCAGCCTTGTTCC
CGGTGCCGCCACGGCGTCGGGGGTGGTGCGGGAGGTGGTTATAAGCCCGT
GGAAACAGGGAGGTGGGGGCAGGAAGAGCCCGCACGTGGCGTCCCATGAG
GAGATGCCCGTGGGGCGCAGGCTCTCAGTGACAGGCGAGCAGGGGGACGG
CCCTGAAACTCCCTCTGACAGGCATGGCAAAGAGGACAAGGTAGCCTGCT
TCCGTGCGACGAGCCAGGATCCAATGGAGACGTCCATAACCGGGGCCGCA
TGTCCACTGCGGAGCCAGCAGCCGCCTCTCCGGCAGCAGGGAGAGGAAGG
GGGGAAGGAGGAGGAGGAAGGGCGAGGGGGTGCAGGCGAGGCGCGGTACG
GGCAAAGGCCATCGCAGAGGCAGCACGGCCAGAGGGAAGGGGAGGAGGAG
GAGGAGGAGGGAAGACGAGGAGACGCTCCGCGGCCGTTGCGGCAGGCGGA
TGGGGCCGCAGAAAAGGGGGAAGAGGAGGGGTCGATTCAGGTCTCGACGG
AGGTGCAGCGTCGCCTCCCCCCCAGCCGGGAGGGAGGGAAGGAAGGGAGA
GAAGGGGAAGAGAAAGCGAGCAGGGAGAGGAAAACCCTCCAAGCCGTGGC
CCGTTTGGACCTGGACGACCAGGCCTCCCCCCTGTGGCTCCCCGAGAGCA
TGGCTCGGAGCACGCCCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCC
TCCATCCTACGGAAGCAAAGTGCCTTCCTCCCTCCCTCCCCCGGCCTCTC
ATGCTCCCCGTCCAGCAACGGCAAAAAGGGCATCCGTTTTGCGGATGCGA
TGGGGCAGGCCCTGGCGGCGGTCCGTTACTCGCAACGGTTGCAATATAGC
CCAACGGCCGTCCCTCAGCGGTGGGAGGAGGGAGGGAGGGAGGAAGGGTG
GGAAGAGGTGACAGAGGAGGAGGAAGAGTGGAACGTGGAGTGGATGGGGG
AGGAGGACGGGGAGGAGGAGGAGGAGGGGGAGCAGGAGGGCTGGTGGACC
CTGTGGCCAAGCGAGCTCTCGGCATTTAAACGGCGGCAAATGGCGGCGGC
CCGGCGTCGCCGACGGCTCCGGAAAGAGCTGCGGAGGCGGGCCGAAGAGG
AGAGAGAACAGGCCCAGCGAAAGGCGCAGGAGGGGAAGGCGGTGGAGTTG
AAGGAGGATCTTGCGGGGGGCCGCGGGGCCGAAAAATACCGAAGGTACAC
GGAGGCGAAACGGAGCCGGATCCCCCTGCCTCCCTCCCCCCCCACCTCTC
CCCGTACGGTGGGCGCTCGGTTGGTCCGAGGGAAAGCTAGCAAAGGGAGT
AAGGTGGGACTGGCGCCGTGGTGGGAGGGAGGAAAGGGGGAGGAGGACGG
GGAGAAGGGGAGGGCGGGTCGGTGGGAGGGAGCCGGGAGAAGCGCGAGGG
AGGGGAAGAGAGAGATGGGGGAGAGGGAGGGAGAAAAGGCGGCCAGGGAT
GTCCAAGCCCAGTGCTGTGTGGTCTCGTAAATGGCGTCCATATCTTGCAT
TAGGCAGTCTCTAGAGCTTGAAAACTTTGAGCAAGGGGCTCCGGTAATAG
ATCGGGCCGCGACTACAAGCCCTGCCACGATCTTGGATGACCTGTCGATC
CCAGACGGGCTGGATCCACCACCTGTCGCGTACAAGGGCTGCGGAAACGA
CGGGTGTGCAGAAGTTGTGGACGCTAGCTTTCCTGCCTACGACCACCTCT
GTTTTAGAGTTCATCGGAGCAGTCACAGCAGGAGTCCTGGCTTCGACCCC
GCCTCGGAGAAAAGCCCCAGCCTTGTTCCCGGTGCCGCCACGGCGTCGGG
GGTGGTGCGGGAGGTGGTTATAAGCCCGTGGAAACAGGGAGGTGGGGGCA
GGAAGAGCCCGCACGTGGCGTCCCATGAGGAGATGCCCGTGGGGCGCAGG
CTCTCAGTGACAGGCGAGCAGGGGGACGGCCCTGAAACTCCCTCTGACAG
GCATGGCAAAGAGGACAAGGTAGCCTGCTTCCGTGCGACGAGCCAGGATC
CAATGGAGACGTCCATAACCGGGGCCGCATGTCCACTGCGGAGCCAGCAG
CCGCCTCTCCGGCAGCAGGGAGAGGAAGGGGGGAAGGAGGAGGAGGAAGG
GCGAGGGGGTGCAGGCGAGGCGCGGTACGGGCAAAGGCCATCGCAGAGGC
AGCACGGCCAGAGGGAAGGGGAGGAGGAGGAGGAGGAGGGAAGACGAGGA
GACGCTCCGCGGCCGTTGCGGCAGGCGGATGGGGCCGCAGAAAAGGGGGA
AGAGGAGGGGTCGATTCAGGTCTCGACGGAGGTGCAGCGTCGCCTCCCCC
CCAGCCGGGAGGGAGGGAAGGAAGGGAGAGAAGGGGAAGAGAAAGCGAGC
AGGGAGAGGAAAACCCTCCAAGCCGTGGCCCGTTTGGACCTGGACGACCA
GGCCTCCCCCCTGTGGCTCCCCGAGAGCATGGCTCGGAGCACGCCCTCCT
CCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCATCCTACGGAAGCAAAGT
GCCTTCCTCCCTCCCTCCCCCGGCCTCTCATGCTCCCCGTCCAGCAACGG
CAAAAAGGGCATCCGTTTTGCGGATGCGATGGGGCAGGCCCTGGCGGCGG
TCCGTTACTCGCAACGGTTGCAATATAGCCCAACGGCCGTCCCTCAGCGG
TGGGAGGAGGGAGGGAGGGAGGAAGGGTGGGAAGAGGTGACAGAGGAGGA
GGAAGAGTGGAACGTGGAGTGGATGGGGGAGGAGGACGGGGAGGAGGAGG
AGGAGGGGGAGCAGGAGGGCTGGTGGACCCTGTGGCCAAGCGAGCTCTCG
GCATTTAAACGGCGGCAAATGGCGGCGGCCCGGCGTCGCCGACGGCTCCG
GAAAGAGCTGCGGAGGCGGGCCGAAGAGGAGAGAGAACAGGCCCAGCGAA
AGGCGCAGGAGGGGAAGGCGGTGGAGTTGAAGGAGGATCTTGCGGGGGGC
CGCGGGGCCGAAAAATACCGAAGGTACACGGAGGCGAAACGGAGCCGGAT
CCCCCTGCCTCCCTCCCCCCCCACCTCTCCCCGTACGGTGGGCGCTCGGT
TGGTCCGAGGGAAAGCTAGCAAAGGGAGTAAGGTGGGACTGGCGCCGTGG
TGGGAGGGAGGAAAGGGGGAGGAGGACGGGGAGAAGGGGAGGGCGGGTCG
GTGGGAGGGAGCCGGGAGAAGCGCGAGGGAGGGGAAGAGAGAGATGGGGG
AGAGGGAGGGAGAAAAGGCGGCCAGGGATGTCCAAGCCCAGTGCTGTGTG
GTCTCGTAAATGGCGTCCATATCTTGCATTAGGCAGTCTCTAGAGCTTGA
AAACTTTGAGCAAGGGGCTCCGGTAATAGATCGGGCCGCGACTACAAGCC
CTGCCACG

Synonyms

Publications