rna1810, rna1810 (mRNA) Nannochloropsis gaditana

Overview
Namerna1810
Unique Namerna1810
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length312
Alignment locationCM002458.1:207482..207769 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g1.1520.mrna
Orig protein idgnl|cribi|Naga_100133g1.1520
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:207482..207769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100133g1gene1739Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1810rna1810-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28866.1cds1806Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1810 ID=rna1810|Name=rna1810|organism=Nannochloropsis gaditana|type=mRNA|length=312bp
ATGCCTGAAAAAATCGCCGCGCGCATTCACGGGCTCGCCTGCGTCACGGC
CTCCGCCTTGTCCTCTGCCGGCTTTGCGGTGGACCCGGCGCCTTTCTTCG
ACACTCTGTGCGTGGACGTGGGGAGCAAAGGTTTGACAGCCGCGGGGGTG
GCGGAGGCGGCGGCGGAGGAAGGCCTGAACATCCGGGTGATTGACCCGAC
GCACGTGGGCCTTGCCTTTGGGGAGACCGTGACGAAAGCCGAAGTGGAAG
GCTTGCTGCGGGCCTTTGGTCGCCCTTGCCGGCTGAAATGGCGCGAAAGA
CGCCCTTCATGA
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protein sequence of rna1810

>rna1810-protein ID=rna1810-protein|Name=rna1810|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MEGGRGEGGHAVYVDGGSSRGRVLGGLGKEAGRLASSSRLPLSVMQGVTE
MGVSEVKHGREGDARGKGGCKGEGWVLS
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mRNA from alignment at CM002458.1:207482..207769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1810 ID=rna1810|Name=rna1810|organism=Nannochloropsis gaditana|type=mRNA|length=288bp|location=Sequence derived from alignment at CM002458.1:207482..207769+ (Nannochloropsis gaditana)
atggaaggtgggaggggggagggggggcatgcGGTGTACGTAGATGGGGG
TTCCAGCCGTGGGAGAGTTTTGGGAGGGTGTGCCGGGGGGGGTTAcgggt
agagggaggggaaggcgcgcGTCGACAggctgggaaaggaggcgggccGT
CTAGCCTCATCCTCCCGTCTCCCGTTGTCCGTAATGCAGGGCGTGACTGA
AATGGGGGTGTCCGAGGTAAAGcatggccgggagggggacgcaaggggaa
aaggaggatgcAAGGGAGAAGGTTGGGTACTATCGTAG
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Coding sequence (CDS) from alignment at CM002458.1:207482..207769+

>rna1810 ID=rna1810|Name=rna1810|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002458.1:207482..207769+ (Nannochloropsis gaditana)
atggaaggtgggaggggggagggggggcatgcGGTGTACGTAGATGGGGG
TTCCAGCCGTGGGAGAGTTTTGGGAGGgctgggaaaggaggcgggccGTC
TAGCCTCATCCTCCCGTCTCCCGTTGTCCGTAATGCAGGGCGTGACTGAA
ATGGGGGTGTCCGAGGTAAAGcatggccgggagggggacgcaaggggaaa
aggaggatgcAAGGGAGAAGGTTGGGTACTATCGTAGatggaaggtggga
ggggggagggggggcatgcGGTGTACGTAGATGGGGGTTCCAGCCGTGGG
AGAGTTTTGGGAGGgctgggaaaggaggcgggccGTCTAGCCTCATCCTC
CCGTCTCCCGTTGTCCGTAATGCAGGGCGTGACTGAAATGGGGGTGTCCG
AGGTAAAGcatggccgggagggggacgcaaggggaaaaggaggatgcAAG
GGAGAAGGTTGGGTACTATCGTAG
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Synonyms
Publications