rna18, rna18 (mRNA) Nannochloropsis gaditana

Overview
Namerna18
Unique Namerna18
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length222
Alignment locationCM002455.1:56048..56541 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101628g2.2403.mrna
Orig protein idgnl|cribi|Naga_101628g2.2403
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:56048..56541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101628g2gene17Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna18rna18-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30656.1cds18Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna18 ID=rna18|Name=rna18|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGCGCGCATCGGTTATGGATGAAATTGAACGTGACTTGATCGATCACCC
TCCCTGCACTTTACATGCATGCTTCCATTTCAGAGCAAATGGGAGAATAA
GTAAGTGTCAAGCTGCAGTACGAAAAATATATATCTATTCAGTGTTTACC
AACATACATCTCAAATGTGGTAGGCAAACATACAAAGAAAATCGTCTGGA
TGTTATCACTTGCTGTAGTTAG
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protein sequence of rna18

>rna18-protein ID=rna18-protein|Name=rna18|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MLRVVCRYVEHSFGEAQTLKYLPNRFSHKIQATTSLHAAFVTQTWELLVM
FFASHSKSVERYSISWWLSFVAPAAHVAVALPQVLRHQASDRKIKRCESI
RAHILKSKFIIFVRLLLL
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mRNA from alignment at CM002455.1:56048..56541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna18 ID=rna18|Name=rna18|organism=Nannochloropsis gaditana|type=mRNA|length=494bp|location=Sequence derived from alignment at CM002455.1:56048..56541- (Nannochloropsis gaditana)
ATGTTACGAGTTGTTTGTAGGTATGTTGAACATTCGTTCGGGGAAGCTCA
AACACTTAAATACCTGCCTAATCGCTTCTCGCATAAGTAAGTGCTTCAAG
AACTTCACCACACATCCTCGCACACTTTTTCGTGGAAAACATATTTCAGA
ATCCAAGCAACTACCTCACTACACGCGGCATTCGTCACACAAACATGGGA
GTTATTGGTGATGTTCTTTGCTTCCCATTCAAAATCTGTCGAGCGATACT
CGATTTCGTGGTGGTTATCTTTTGTTGCCCCTGCCGCACATGTTGCGGTT
GCCCTTCCACAAGTACTGAGGCATCAAGCGTCTGATGTCTTTTCTCCCCG
GTGAGAAGATATCGAGGAAAATGGGTATCCGTACTACCGAACACGAGACA
TTGTGTGTAGCGAAAGATAAAGAGATGTGAAAGTATTCGCGCTCACATAT
TGAAAAGTAAATTTATAATATTCGTAAGACTTCTGCTATTATAA
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Coding sequence (CDS) from alignment at CM002455.1:56048..56541-

>rna18 ID=rna18|Name=rna18|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002455.1:56048..56541- (Nannochloropsis gaditana)
CGAAAGATAAAGAGATGTGAAAGTATTCGCGCTCACATATTGAAAAGTAA
ATTTATAATATTCGTAAGACTTCTGCTATTATAAAATCCAAGCAACTACC
TCACTACACGCGGCATTCGTCACACAAACATGGGAGTTATTGGTGATGTT
CTTTGCTTCCCATTCAAAATCTGTCGAGCGATACTCGATTTCGTGGTGGT
TATCTTTTGTTGCCCCTGCCGCACATGTTGCGGTTGCCCTTCCACAAGTA
CTGAGGCATCAAGCGTCTGATATGTTACGAGTTGTTTGTAGGTATGTTGA
ACATTCGTTCGGGGAAGCTCAAACACTTAAATACCTGCCTAATCGCTTCT
CGCATAACGAAAGATAAAGAGATGTGAAAGTATTCGCGCTCACATATTGA
AAAGTAAATTTATAATATTCGTAAGACTTCTGCTATTATAAAATCCAAGC
AACTACCTCACTACACGCGGCATTCGTCACACAAACATGGGAGTTATTGG
TGATGTTCTTTGCTTCCCATTCAAAATCTGTCGAGCGATACTCGATTTCG
TGGTGGTTATCTTTTGTTGCCCCTGCCGCACATGTTGCGGTTGCCCTTCC
ACAAGTACTGAGGCATCAAGCGTCTGATATGTTACGAGTTGTTTGTAGGT
ATGTTGAACATTCGTTCGGGGAAGCTCAAACACTTAAATACCTGCCTAAT
CGCTTCTCGCATAACGAAAGATAAAGAGATGTGAAAGTATTCGCGCTCAC
ATATTGAAAAGTAAATTTATAATATTCGTAAGACTTCTGCTATTATAAAA
TCCAAGCAACTACCTCACTACACGCGGCATTCGTCACACAAACATGGGAG
TTATTGGTGATGTTCTTTGCTTCCCATTCAAAATCTGTCGAGCGATACTC
GATTTCGTGGTGGTTATCTTTTGTTGCCCCTGCCGCACATGTTGCGGTTG
CCCTTCCACAAGTACTGAGGCATCAAGCGTCTGATATGTTACGAGTTGTT
TGTAGGTATGTTGAACATTCGTTCGGGGAAGCTCAAACACTTAAATACCT
GCCTAATCGCTTCTCGCATAA
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Synonyms
Publications